Wall clock time and date at job start Tue Mar 31 2020 11:22:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.46900 * 2 1 4 4 H 1.08994 * 109.47177 * 307.51219 * 3 2 1 5 5 C 1.50699 * 109.47310 * 187.51092 * 3 2 1 6 6 H 1.08003 * 120.00592 * 245.29979 * 5 3 2 7 7 C 1.37877 * 119.99911 * 65.02105 * 5 3 2 8 8 N 1.31518 * 120.00044 * 7.74645 * 7 5 3 9 9 Si 1.86802 * 120.00237 * 187.74799 * 7 5 3 10 10 H 1.48503 * 109.47086 * 94.95079 * 9 7 5 11 11 H 1.48504 * 109.47241 * 214.94946 * 9 7 5 12 12 H 1.48500 * 109.47218 * 334.95391 * 9 7 5 13 13 N 1.46498 * 109.47181 * 67.51092 * 3 2 1 14 14 C 1.34778 * 120.00359 * 275.00033 * 13 3 2 15 15 O 1.21552 * 119.99419 * 359.97438 * 14 13 3 16 16 C 1.47858 * 120.00146 * 180.02562 * 14 13 3 17 17 C 1.39651 * 120.08933 * 353.78714 * 16 14 13 18 18 C 1.38013 * 120.09177 * 179.97438 * 17 16 14 19 19 C 1.38175 * 120.26930 * 0.02562 * 18 17 16 20 20 C 1.39384 * 120.17409 * 359.97438 * 19 18 17 21 21 C 1.48477 * 120.04416 * 180.02562 * 20 19 18 22 22 N 1.34039 * 126.66791 * 179.69049 * 21 20 19 23 23 N 1.28987 * 107.26515 * 179.83399 * 22 21 20 24 24 N 1.28722 * 108.94310 * 0.42558 * 23 22 21 25 25 H 0.97002 * 125.34289 * 179.74437 * 24 23 22 26 26 N 1.28866 * 109.31653 * 359.72998 * 24 23 22 27 27 C 1.39070 * 119.90624 * 359.74372 * 20 19 18 28 28 C 1.50693 * 120.13261 * 180.27667 * 27 20 19 29 29 H 1.09004 * 109.47376 * 299.99828 * 1 2 3 30 30 H 1.08990 * 109.47357 * 60.00068 * 1 2 3 31 31 H 1.08999 * 109.46990 * 180.02562 * 1 2 3 32 32 H 1.08990 * 109.47376 * 240.00007 * 2 1 3 33 33 H 1.08998 * 109.47413 * 119.99669 * 2 1 3 34 34 H 0.97001 * 120.00008 * 179.97438 * 8 7 5 35 35 H 0.97008 * 119.99888 * 95.00448 * 13 3 2 36 36 H 1.07998 * 119.95642 * 0.02562 * 17 16 14 37 37 H 1.07999 * 119.86347 * 180.02562 * 18 17 16 38 38 H 1.08000 * 119.90943 * 179.97438 * 19 18 17 39 39 H 1.09003 * 109.47360 * 265.77843 * 28 27 20 40 40 H 1.09002 * 109.47155 * 25.78011 * 28 27 20 41 41 H 1.08998 * 109.47005 * 145.78235 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5710 1.9936 -0.8151 5 6 3.5354 1.4467 -0.1857 6 1 4.1771 1.8016 0.6072 7 6 4.0848 0.9920 -1.3657 8 7 3.3056 0.6985 -2.3838 9 14 5.9359 0.7928 -1.5185 10 1 6.3092 -0.6121 -1.2148 11 1 6.3574 1.1289 -2.9023 12 1 6.6125 1.7030 -0.5600 13 7 1.7046 2.0790 1.2762 14 6 0.4932 2.6438 1.4498 15 8 -0.3209 2.6254 0.5473 16 6 0.1550 3.2867 2.7377 17 6 1.0362 3.1977 3.8174 18 6 0.7208 3.7982 5.0193 19 6 -0.4670 4.4896 5.1619 20 6 -1.3547 4.5855 4.0916 21 6 -2.6299 5.3297 4.2479 22 7 -3.5717 5.5095 3.3112 23 7 -4.5170 6.2045 3.8472 24 7 -4.2006 6.4701 5.0663 25 1 -4.7409 6.9835 5.6871 26 7 -3.0536 5.9466 5.3328 27 6 -1.0415 3.9881 2.8754 28 6 -1.9946 4.0939 1.7130 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.6922 0.3790 -3.2141 35 1 2.3544 2.0941 1.9962 36 1 1.9662 2.6589 3.7114 37 1 1.4052 3.7274 5.8517 38 1 -0.7081 4.9570 6.1052 39 1 -2.6424 3.2174 1.6933 40 1 -2.6022 4.9923 1.8219 41 1 -1.4288 4.1484 0.7830 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001609187968.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:14 Heat of formation + Delta-G solvation = 95.848603 kcal Electronic energy + Delta-G solvation = -25798.841844 eV Core-core repulsion = 22102.142317 eV Total energy + Delta-G solvation = -3696.699527 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -45.46843 -41.36277 -39.52186 -36.92514 -35.66274 -34.78342 -34.23323 -33.36954 -33.01939 -31.45193 -29.03488 -28.00411 -25.98171 -25.21370 -25.14793 -23.98897 -22.28404 -21.78922 -21.07339 -20.09311 -19.17822 -18.14874 -17.81000 -17.27542 -16.76044 -16.53737 -16.35482 -15.91933 -15.90051 -15.10362 -14.94352 -14.55957 -14.49795 -14.22961 -13.74424 -13.57934 -13.39643 -13.23054 -13.12607 -12.95204 -12.81782 -12.73144 -12.59522 -12.39814 -12.29023 -12.14141 -12.05090 -11.93706 -11.69973 -11.52990 -11.03822 -10.51747 -10.31565 -9.91648 -9.63350 -9.48599 -8.15711 -6.29399 -0.37939 0.00699 0.21402 1.22577 1.43360 1.46889 1.47404 1.57973 2.09914 2.36697 2.54482 2.72569 2.89633 3.16320 3.18495 3.84169 3.89946 3.98666 4.13162 4.21189 4.39845 4.47781 4.50637 4.57729 4.72139 4.78527 4.84606 4.89524 4.96395 5.10604 5.27632 5.31516 5.35719 5.45542 5.49323 5.52071 5.60800 5.64338 5.69534 5.78510 5.85722 5.98017 6.12032 6.79735 7.02583 7.13720 7.36905 7.61278 8.92725 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.025345 B = 0.003039 C = 0.002864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.469706 B = 9211.277723 C = 9774.845748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.112 4.112 3 C 0.278 3.722 4 H 0.004 0.996 5 C -0.547 4.547 6 H 0.074 0.926 7 C 0.017 3.983 8 N -0.917 5.917 9 Si 0.967 3.033 10 H -0.273 1.273 11 H -0.290 1.290 12 H -0.261 1.261 13 N -0.699 5.699 14 C 0.538 3.462 15 O -0.568 6.568 16 C -0.153 4.153 17 C -0.059 4.059 18 C -0.122 4.122 19 C -0.045 4.045 20 C -0.050 4.050 21 C 0.216 3.784 22 N -0.295 5.295 23 N -0.062 5.062 24 N -0.196 5.196 25 H 0.495 0.505 26 N -0.287 5.287 27 C 0.001 3.999 28 C -0.131 4.131 29 H 0.046 0.954 30 H 0.025 0.975 31 H 0.045 0.955 32 H 0.053 0.947 33 H 0.049 0.951 34 H 0.264 0.736 35 H 0.402 0.598 36 H 0.151 0.849 37 H 0.177 0.823 38 H 0.163 0.837 39 H 0.062 0.938 40 H 0.097 0.903 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.816 9.641 21.711 25.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.151 4.151 3 C 0.175 3.825 4 H 0.022 0.978 5 C -0.585 4.585 6 H 0.092 0.908 7 C -0.184 4.184 8 N -0.555 5.555 9 Si 0.792 3.208 10 H -0.199 1.199 11 H -0.216 1.216 12 H -0.185 1.185 13 N -0.348 5.348 14 C 0.326 3.674 15 O -0.450 6.450 16 C -0.157 4.157 17 C -0.078 4.078 18 C -0.139 4.139 19 C -0.065 4.065 20 C -0.053 4.053 21 C -0.064 4.064 22 N -0.166 5.166 23 N -0.056 5.056 24 N -0.048 5.048 25 H 0.354 0.646 26 N -0.140 5.140 27 C -0.002 4.002 28 C -0.187 4.187 29 H 0.065 0.935 30 H 0.044 0.956 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.067 0.933 34 H 0.073 0.927 35 H 0.238 0.762 36 H 0.168 0.832 37 H 0.195 0.805 38 H 0.180 0.820 39 H 0.080 0.920 40 H 0.115 0.885 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -9.982 9.817 20.664 24.961 hybrid contribution 0.990 -0.157 -0.206 1.024 sum -8.992 9.660 20.458 24.346 Atomic orbital electron populations 1.21684 0.96878 0.99193 1.00487 1.21702 0.93944 0.99055 1.00418 1.18381 0.94177 0.89224 0.80712 0.97838 1.21568 0.91493 1.43866 1.01586 0.90812 1.25766 1.02933 0.94786 0.94894 1.70135 1.37124 1.44792 1.03464 0.85415 0.79414 0.78726 0.77286 1.19861 1.21600 1.18456 1.46170 1.14658 1.56364 1.17624 1.18656 0.82344 0.78711 0.87673 1.90692 1.49464 1.59988 1.44885 1.19808 0.97119 1.03976 0.94768 1.21814 0.98144 0.95937 0.91941 1.21411 0.97266 0.97306 0.97953 1.21626 0.92074 0.95098 0.97682 1.17179 0.90902 1.02233 0.95003 1.23621 0.97141 0.99568 0.86055 1.76183 1.00073 1.14677 1.25689 1.78916 1.20419 1.12032 0.94271 1.47769 1.12240 1.34359 1.10395 0.64578 1.74832 0.99830 1.14317 1.24996 1.20028 0.93593 0.92067 0.94546 1.21367 0.97956 1.03228 0.96177 0.93502 0.95596 0.93572 0.92823 0.93262 0.92715 0.76199 0.83187 0.80515 0.81975 0.91958 0.88528 0.91107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.68 8.57 71.98 0.62 -5.06 16 2 C -0.11 -5.44 5.50 30.59 0.17 -5.27 16 3 C 0.28 14.16 2.09 44.25 0.09 14.25 16 4 H 0.00 0.23 7.54 -2.39 -0.02 0.21 16 5 C -0.55 -28.58 8.67 25.60 0.22 -28.36 16 6 H 0.07 3.57 7.73 -2.91 -0.02 3.55 16 7 C 0.02 0.89 5.16 84.65 0.44 1.32 16 8 N -0.92 -53.12 12.06 21.45 0.26 -52.86 16 9 Si 0.97 41.80 29.54 68.60 2.03 43.83 16 10 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 11 H -0.29 -12.65 7.11 99.48 0.71 -11.94 16 12 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 13 N -0.70 -28.65 4.99 -448.97 -2.24 -30.89 16 14 C 0.54 21.86 6.39 86.79 0.55 22.42 16 15 O -0.57 -27.17 10.45 -3.88 -0.04 -27.22 16 16 C -0.15 -4.85 5.87 -20.12 -0.12 -4.97 16 17 C -0.06 -1.32 9.52 22.56 0.21 -1.11 16 18 C -0.12 -1.95 10.02 22.20 0.22 -1.73 16 19 C -0.04 -0.80 9.69 22.53 0.22 -0.58 16 20 C -0.05 -1.24 5.87 -20.07 -0.12 -1.36 16 21 C 0.22 5.22 7.79 137.39 1.07 6.29 16 22 N -0.29 -7.90 9.02 -52.18 -0.47 -8.37 16 23 N -0.06 -1.29 13.47 37.02 0.50 -0.79 16 24 N -0.20 -2.61 7.90 37.02 0.29 -2.32 16 25 H 0.49 1.16 8.96 -347.54 -3.12 -1.95 16 26 N -0.29 -5.17 12.07 -52.13 -0.63 -5.80 16 27 C 0.00 0.03 5.94 -19.39 -0.12 -0.09 16 28 C -0.13 -4.56 8.14 71.23 0.58 -3.98 16 29 H 0.05 2.08 5.59 -2.38 -0.01 2.07 16 30 H 0.02 1.27 7.98 -2.39 -0.02 1.25 16 31 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.05 2.90 6.65 -2.39 -0.02 2.88 16 33 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 34 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 35 H 0.40 13.61 6.59 -92.70 -0.61 13.00 16 36 H 0.15 2.80 6.44 -2.91 -0.02 2.78 16 37 H 0.18 1.39 8.06 -2.91 -0.02 1.37 16 38 H 0.16 1.97 7.87 -2.91 -0.02 1.94 16 39 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 40 H 0.10 3.17 4.84 -2.39 -0.01 3.16 16 41 H 0.07 2.88 5.70 -2.39 -0.01 2.87 16 Total: -1.00 -73.29 336.73 1.13 -72.16 By element: Atomic # 1 Polarization: 23.09 SS G_CDS: -2.61 Total: 20.47 kcal Atomic # 6 Polarization: -12.26 SS G_CDS: 4.05 Total: -8.21 kcal Atomic # 7 Polarization: -98.74 SS G_CDS: -2.29 Total: -101.03 kcal Atomic # 8 Polarization: -27.17 SS G_CDS: -0.04 Total: -27.22 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 2.03 Total: 43.83 kcal Total: -73.29 1.13 -72.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609187968.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.011 kcal (2) G-P(sol) polarization free energy of solvation -73.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.162 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds