Wall clock time and date at job start Tue Mar 31 2020 10:39:50
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46496 * 1
3 3 C 1.38276 * 119.99947 * 2 1
4 4 N 1.32418 * 119.82913 * 354.55812 * 3 2 1
5 5 C 1.31850 * 121.77888 * 180.02562 * 4 3 2
6 6 C 1.38375 * 121.21982 * 0.02562 * 5 4 3
7 7 C 1.38324 * 119.51223 * 359.97438 * 6 5 4
8 8 C 1.39996 * 118.36635 * 0.02562 * 7 6 5
9 9 C 1.47390 * 120.61315 * 179.97438 * 8 7 6
10 10 O 1.21609 * 120.00197 * 185.72951 * 9 8 7
11 11 N 1.34779 * 119.99935 * 5.72981 * 9 8 7
12 12 C 1.39381 * 120.00161 * 180.02562 * 11 9 8
13 13 C 1.36149 * 126.26096 * 359.68540 * 12 11 9
14 14 C 1.39734 * 107.85770 * 179.84760 * 13 12 11
15 15 C 1.50702 * 125.78061 * 180.16702 * 14 13 12
16 16 N 1.30832 * 108.44245 * 0.42873 * 14 13 12
17 17 N 1.35809 * 126.26510 * 180.02562 * 12 11 9
18 18 C 1.46504 * 126.09297 * 359.97430 * 17 12 11
19 19 C 1.50703 * 109.46739 * 89.99895 * 18 17 12
20 20 H 1.08002 * 120.00210 * 0.02562 * 19 18 17
21 21 C 1.37875 * 119.99805 * 179.97438 * 19 18 17
22 22 N 1.31514 * 120.00023 * 0.02562 * 21 19 18
23 23 Si 1.86799 * 120.00182 * 180.02562 * 21 19 18
24 24 H 1.48499 * 109.46912 * 60.00236 * 23 21 19
25 25 H 1.48503 * 109.47302 * 180.02562 * 23 21 19
26 26 H 1.48503 * 109.47132 * 300.00519 * 23 21 19
27 27 H 1.09001 * 109.47461 * 180.02562 * 1 2 3
28 28 H 1.08999 * 109.47507 * 300.00255 * 1 2 3
29 29 H 1.08999 * 109.47227 * 59.99953 * 1 2 3
30 30 H 0.96999 * 120.00335 * 179.97438 * 2 1 3
31 31 H 1.08001 * 119.38932 * 179.72501 * 5 4 3
32 32 H 1.07999 * 120.24113 * 179.97438 * 6 5 4
33 33 H 1.08000 * 120.81857 * 180.02562 * 7 6 5
34 34 H 0.97007 * 120.00038 * 359.97438 * 11 9 8
35 35 H 1.07995 * 126.07328 * 0.02562 * 13 12 11
36 36 H 1.08998 * 109.47026 * 270.28073 * 15 14 13
37 37 H 1.09002 * 109.46857 * 30.27911 * 15 14 13
38 38 H 1.09003 * 109.47188 * 150.27797 * 15 14 13
39 39 H 1.08991 * 109.47022 * 210.00316 * 18 17 12
40 40 H 1.09004 * 109.47001 * 330.00687 * 18 17 12
41 41 H 0.97000 * 120.00165 * 179.97438 * 22 21 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1563 1.1975 0.0000
4 7 1.4953 2.3397 -0.1089
5 6 2.1155 3.5032 -0.1137
6 6 3.4927 3.5823 -0.0049
7 6 4.2348 2.4208 0.1116
8 6 3.5570 1.1959 0.1145
9 6 4.2987 -0.0720 0.2356
10 8 3.7117 -1.1321 0.1325
11 7 5.6275 -0.0566 0.4605
12 6 6.3290 -1.2556 0.5744
13 6 5.8025 -2.5081 0.4864
14 6 6.8448 -3.4238 0.6531
15 6 6.7122 -4.9247 0.6247
16 7 7.9546 -2.7575 0.8436
17 7 7.6617 -1.3884 0.7999
18 6 8.6219 -0.2946 0.9668
19 6 8.7135 0.0751 2.4249
20 1 8.1166 -0.4522 3.1543
21 6 9.5602 1.0859 2.8279
22 7 10.2875 1.7277 1.9398
23 14 9.6744 1.5437 4.6353
24 1 10.1258 0.3646 5.4170
25 1 10.6477 2.6526 4.8046
26 1 8.3401 1.9784 5.1211
27 1 -0.3634 -1.0276 0.0005
28 1 -0.3634 0.5139 0.8899
29 1 -0.3633 0.5138 -0.8900
30 1 1.9500 -0.8400 0.0004
31 1 1.5384 4.4111 -0.2091
32 1 3.9845 4.5438 -0.0110
33 1 5.3107 2.4580 0.1982
34 1 6.0958 0.7889 0.5423
35 1 4.7643 -2.7509 0.3151
36 1 6.5091 -5.2906 1.6311
37 1 5.8916 -5.2044 -0.0361
38 1 7.6398 -5.3646 0.2583
39 1 9.6013 -0.6134 0.6105
40 1 8.2904 0.5707 0.3928
41 1 10.8830 2.4390 2.2232
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001647587734.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:39:50
Heat of formation + Delta-G solvation = 89.631723 kcal
Electronic energy + Delta-G solvation = -25794.228887 eV
Core-core repulsion = 22097.259776 eV
Total energy + Delta-G solvation = -3696.969111 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 315.144 amu
Computer time = 0.69 seconds
Orbital eigenvalues (eV)
-41.15410 -40.32808 -38.74178 -36.01664 -34.69468 -33.80589 -32.66279 -32.03128
-30.55210 -29.16294 -28.24216 -26.21639 -26.01519 -24.77014 -22.93116 -22.32417
-21.68106 -19.82614 -19.45124 -17.92457 -17.40059 -16.95539 -16.71792 -16.06060
-15.58157 -15.44505 -14.94514 -14.66236 -14.61768 -14.26923 -14.15060 -13.95983
-13.17083 -13.11118 -12.92407 -12.79403 -12.56533 -12.52076 -12.21899 -12.07839
-11.82003 -11.59462 -11.12844 -10.89860 -10.50853 -10.43805 -10.36584 -10.14779
-9.93965 -9.85904 -9.67817 -9.47010 -8.74443 -7.98992 -7.84433 -7.45431
-6.36066 -4.44852 0.64783 1.36359 2.38694 2.72535 3.10737 3.16664
3.21258 3.24903 3.26689 3.54449 3.74570 3.88921 4.22156 4.34619
4.60107 4.72954 4.95145 4.97170 5.13820 5.21492 5.32349 5.37554
5.45716 5.60547 5.69349 5.75187 6.01208 6.04209 6.12032 6.12431
6.21856 6.33536 6.36040 6.61938 6.79232 7.00434 7.08227 7.33185
7.46445 7.53309 7.58064 7.76388 7.84063 8.07441 8.29173 8.58019
8.67249 9.22986 10.70945
Molecular weight = 315.14amu
Principal moments of inertia in cm(-1)
A = 0.010324 B = 0.004671 C = 0.003462
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2711.563108 B = 5992.422024 C = 8085.537141
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.095 3.905
2 N -0.706 5.706
3 C 0.456 3.544
4 N -0.551 5.551
5 C 0.181 3.819
6 C -0.246 4.246
7 C 0.008 3.992
8 C -0.264 4.264
9 C 0.585 3.415
10 O -0.528 6.528
11 N -0.630 5.630
12 C 0.299 3.701
13 C -0.290 4.290
14 C 0.050 3.950
15 C -0.062 4.062
16 N -0.282 5.282
17 N -0.345 5.345
18 C 0.257 3.743
19 C -0.542 4.542
20 H 0.064 0.936
21 C 0.068 3.932
22 N -0.890 5.890
23 Si 0.906 3.094
24 H -0.273 1.273
25 H -0.283 1.283
26 H -0.274 1.274
27 H 0.071 0.929
28 H 0.055 0.945
29 H 0.057 0.943
30 H 0.427 0.573
31 H 0.160 0.840
32 H 0.139 0.861
33 H 0.139 0.861
34 H 0.416 0.584
35 H 0.162 0.838
36 H 0.068 0.932
37 H 0.070 0.930
38 H 0.066 0.934
39 H 0.057 0.943
40 H 0.043 0.957
41 H 0.270 0.730
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -15.867 1.458 -5.231 16.771
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.050 4.050
2 N -0.348 5.348
3 C 0.216 3.784
4 N -0.269 5.269
5 C 0.021 3.979
6 C -0.269 4.269
7 C -0.018 4.018
8 C -0.275 4.275
9 C 0.375 3.625
10 O -0.406 6.406
11 N -0.276 5.276
12 C 0.077 3.923
13 C -0.322 4.322
14 C -0.115 4.115
15 C -0.121 4.121
16 N -0.107 5.107
17 N -0.131 5.131
18 C 0.139 3.861
19 C -0.580 4.580
20 H 0.083 0.917
21 C -0.136 4.136
22 N -0.527 5.527
23 Si 0.732 3.268
24 H -0.198 1.198
25 H -0.208 1.208
26 H -0.200 1.200
27 H 0.090 0.910
28 H 0.073 0.927
29 H 0.076 0.924
30 H 0.277 0.723
31 H 0.177 0.823
32 H 0.157 0.843
33 H 0.157 0.843
34 H 0.254 0.746
35 H 0.179 0.821
36 H 0.087 0.913
37 H 0.089 0.911
38 H 0.085 0.915
39 H 0.075 0.925
40 H 0.061 0.939
41 H 0.079 0.921
Dipole moment (debyes) X Y Z Total
from point charges -15.876 0.786 -5.177 16.718
hybrid contribution 0.799 0.942 1.036 1.613
sum -15.077 1.729 -4.141 15.731
Atomic orbital electron populations
1.21512 0.79909 1.01735 1.01862 1.45399 1.06976 1.06360 1.76067
1.18245 0.86347 0.87177 0.86667 1.67370 1.39742 0.97379 1.22388
1.22676 0.92153 0.94594 0.88502 1.21748 0.95230 0.99256 1.10704
1.21639 1.00408 0.91036 0.88716 1.19882 0.93285 0.93663 1.20647
1.17731 0.80587 0.88505 0.75704 1.90324 1.66910 1.31822 1.51555
1.42487 1.07849 1.07712 1.69538 1.18012 0.84824 0.86920 1.02577
1.21247 1.01214 0.88652 1.21093 1.22019 0.91253 0.96646 1.01602
1.20023 1.02188 0.87756 1.02127 1.77340 1.22233 0.86067 1.25102
1.49511 1.04240 1.05874 1.53474 1.19622 0.87662 0.80529 0.98254
1.21306 1.26076 1.18824 0.91843 0.91749 1.24923 0.94558 0.95471
0.98617 1.69904 1.25612 1.23158 1.34039 0.86418 0.78141 0.78255
0.83941 1.19843 1.20845 1.19964 0.91049 0.92681 0.92424 0.72264
0.82307 0.84304 0.84296 0.74608 0.82066 0.91310 0.91149 0.91538
0.92465 0.93922 0.92071
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.09 0.93 10.72 59.84 0.64 1.57 16
2 N -0.71 -9.18 5.73 -67.01 -0.38 -9.57 16
3 C 0.46 6.36 7.48 -155.18 -1.16 5.20 16
4 N -0.55 -6.98 9.55 -12.20 -0.12 -7.10 16
5 C 0.18 1.84 11.16 -17.49 -0.20 1.64 16
6 C -0.25 -2.49 10.08 -39.50 -0.40 -2.89 16
7 C 0.01 0.10 9.63 -38.89 -0.37 -0.27 16
8 C -0.26 -3.76 5.91 -104.65 -0.62 -4.38 16
9 C 0.58 9.65 7.72 -12.53 -0.10 9.55 16
10 O -0.53 -9.19 10.80 5.27 0.06 -9.13 16
11 N -0.63 -11.21 5.37 -12.33 -0.07 -11.28 16
12 C 0.30 6.28 7.68 -152.74 -1.17 5.10 16
13 C -0.29 -5.85 9.58 -39.77 -0.38 -6.23 16
14 C 0.05 0.99 7.20 -82.46 -0.59 0.40 16
15 C -0.06 -0.91 10.44 36.01 0.38 -0.53 16
16 N -0.28 -6.53 12.56 33.64 0.42 -6.11 16
17 N -0.35 -8.05 3.62 -61.44 -0.22 -8.27 16
18 C 0.26 6.37 6.02 -5.19 -0.03 6.34 16
19 C -0.54 -14.45 9.39 -34.44 -0.32 -14.77 16
20 H 0.06 1.79 7.81 -52.49 -0.41 1.38 16
21 C 0.07 1.79 5.46 -17.82 -0.10 1.70 16
22 N -0.89 -23.98 13.29 55.43 0.74 -23.25 16
23 Si 0.91 20.55 29.54 -169.99 -5.02 15.53 16
24 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16
25 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16
26 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16
27 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16
28 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16
29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16
30 H 0.43 5.94 5.33 -40.92 -0.22 5.72 16
31 H 0.16 1.04 8.06 -52.49 -0.42 0.62 16
32 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16
33 H 0.14 1.53 6.55 -52.49 -0.34 1.18 16
34 H 0.42 6.87 6.12 -40.82 -0.25 6.62 16
35 H 0.16 3.08 5.82 -52.49 -0.31 2.78 16
36 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16
37 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16
38 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16
39 H 0.06 1.53 8.14 -51.93 -0.42 1.10 16
40 H 0.04 1.02 7.52 -51.93 -0.39 0.63 16
41 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16
LS Contribution 350.83 15.07 5.29 5.29
Total: -1.00 -31.36 350.83 -8.59 -39.95
By element:
Atomic # 1 Polarization: 16.38 SS G_CDS: -4.86 Total: 11.53 kcal
Atomic # 6 Polarization: 6.84 SS G_CDS: -4.43 Total: 2.42 kcal
Atomic # 7 Polarization: -65.94 SS G_CDS: 0.37 Total: -65.57 kcal
Atomic # 8 Polarization: -9.19 SS G_CDS: 0.06 Total: -9.13 kcal
Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal
Total LS contribution 5.29 Total: 5.29 kcal
Total: -31.36 -8.59 -39.95 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001647587734.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 129.580 kcal
(2) G-P(sol) polarization free energy of solvation -31.356 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.224 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.592 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.949 kcal
(6) G-S(sol) free energy of system = (1) + (5) 89.632 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.69 seconds