Wall clock time and date at job start Tue Mar 31 2020 10:39:49
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46496 * 1
3 3 C 1.38276 * 119.99947 * 2 1
4 4 N 1.32418 * 119.82913 * 354.55812 * 3 2 1
5 5 C 1.31850 * 121.77888 * 180.02562 * 4 3 2
6 6 C 1.38375 * 121.21982 * 0.02562 * 5 4 3
7 7 C 1.38324 * 119.51223 * 359.97438 * 6 5 4
8 8 C 1.39996 * 118.36635 * 0.02562 * 7 6 5
9 9 C 1.47390 * 120.61315 * 179.97438 * 8 7 6
10 10 O 1.21609 * 120.00197 * 185.72951 * 9 8 7
11 11 N 1.34779 * 119.99935 * 5.72981 * 9 8 7
12 12 C 1.39381 * 120.00161 * 180.02562 * 11 9 8
13 13 C 1.36149 * 126.26096 * 359.68540 * 12 11 9
14 14 C 1.39734 * 107.85770 * 179.84760 * 13 12 11
15 15 C 1.50702 * 125.78061 * 180.16702 * 14 13 12
16 16 N 1.30832 * 108.44245 * 0.42873 * 14 13 12
17 17 N 1.35809 * 126.26510 * 180.02562 * 12 11 9
18 18 C 1.46504 * 126.09297 * 359.97430 * 17 12 11
19 19 C 1.50703 * 109.46739 * 89.99895 * 18 17 12
20 20 H 1.08002 * 120.00210 * 0.02562 * 19 18 17
21 21 C 1.37875 * 119.99805 * 179.97438 * 19 18 17
22 22 N 1.31514 * 120.00023 * 0.02562 * 21 19 18
23 23 Si 1.86799 * 120.00182 * 180.02562 * 21 19 18
24 24 H 1.48499 * 109.46912 * 60.00236 * 23 21 19
25 25 H 1.48503 * 109.47302 * 180.02562 * 23 21 19
26 26 H 1.48503 * 109.47132 * 300.00519 * 23 21 19
27 27 H 1.09001 * 109.47461 * 180.02562 * 1 2 3
28 28 H 1.08999 * 109.47507 * 300.00255 * 1 2 3
29 29 H 1.08999 * 109.47227 * 59.99953 * 1 2 3
30 30 H 0.96999 * 120.00335 * 179.97438 * 2 1 3
31 31 H 1.08001 * 119.38932 * 179.72501 * 5 4 3
32 32 H 1.07999 * 120.24113 * 179.97438 * 6 5 4
33 33 H 1.08000 * 120.81857 * 180.02562 * 7 6 5
34 34 H 0.97007 * 120.00038 * 359.97438 * 11 9 8
35 35 H 1.07995 * 126.07328 * 0.02562 * 13 12 11
36 36 H 1.08998 * 109.47026 * 270.28073 * 15 14 13
37 37 H 1.09002 * 109.46857 * 30.27911 * 15 14 13
38 38 H 1.09003 * 109.47188 * 150.27797 * 15 14 13
39 39 H 1.08991 * 109.47022 * 210.00316 * 18 17 12
40 40 H 1.09004 * 109.47001 * 330.00687 * 18 17 12
41 41 H 0.97000 * 120.00165 * 179.97438 * 22 21 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1563 1.1975 0.0000
4 7 1.4953 2.3397 -0.1089
5 6 2.1155 3.5032 -0.1137
6 6 3.4927 3.5823 -0.0049
7 6 4.2348 2.4208 0.1116
8 6 3.5570 1.1959 0.1145
9 6 4.2987 -0.0720 0.2356
10 8 3.7117 -1.1321 0.1325
11 7 5.6275 -0.0566 0.4605
12 6 6.3290 -1.2556 0.5744
13 6 5.8025 -2.5081 0.4864
14 6 6.8448 -3.4238 0.6531
15 6 6.7122 -4.9247 0.6247
16 7 7.9546 -2.7575 0.8436
17 7 7.6617 -1.3884 0.7999
18 6 8.6219 -0.2946 0.9668
19 6 8.7135 0.0751 2.4249
20 1 8.1166 -0.4522 3.1543
21 6 9.5602 1.0859 2.8279
22 7 10.2875 1.7277 1.9398
23 14 9.6744 1.5437 4.6353
24 1 10.1258 0.3646 5.4170
25 1 10.6477 2.6526 4.8046
26 1 8.3401 1.9784 5.1211
27 1 -0.3634 -1.0276 0.0005
28 1 -0.3634 0.5139 0.8899
29 1 -0.3633 0.5138 -0.8900
30 1 1.9500 -0.8400 0.0004
31 1 1.5384 4.4111 -0.2091
32 1 3.9845 4.5438 -0.0110
33 1 5.3107 2.4580 0.1982
34 1 6.0958 0.7889 0.5423
35 1 4.7643 -2.7509 0.3151
36 1 6.5091 -5.2906 1.6311
37 1 5.8916 -5.2044 -0.0361
38 1 7.6398 -5.3646 0.2583
39 1 9.6013 -0.6134 0.6105
40 1 8.2904 0.5707 0.3928
41 1 10.8830 2.4390 2.2232
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001647587734.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:39:49
Heat of formation + Delta-G solvation = 70.171296 kcal
Electronic energy + Delta-G solvation = -25795.072754 eV
Core-core repulsion = 22097.259776 eV
Total energy + Delta-G solvation = -3697.812978 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 315.144 amu
Computer time = 0.85 seconds
Orbital eigenvalues (eV)
-42.54392 -41.56679 -39.97440 -37.03844 -36.13078 -35.57249 -33.93293 -33.52222
-31.48641 -30.73182 -29.77269 -27.81905 -27.03933 -25.84827 -24.74327 -23.28379
-22.99806 -21.30638 -20.90574 -18.99645 -18.82548 -18.60009 -18.13390 -17.32282
-16.85959 -16.76861 -16.42492 -15.94695 -15.89137 -15.59727 -15.29751 -15.13551
-14.59858 -14.44090 -14.12519 -14.02820 -13.92709 -13.60281 -13.47178 -13.37981
-13.13872 -12.97127 -12.91317 -12.71722 -12.29847 -12.01538 -11.72819 -11.53859
-11.32094 -11.07341 -10.91751 -10.77188 -10.50814 -9.65473 -9.15291 -8.72382
-8.37344 -6.54968 -0.34800 0.45761 0.91064 1.26801 1.36146 1.38170
1.47016 1.71182 2.06596 2.12807 2.32389 2.36567 2.90763 2.92944
3.34781 3.60776 3.81477 3.82877 4.06719 4.16386 4.32698 4.47410
4.53160 4.61421 4.69606 4.72012 4.79871 4.83457 4.88199 4.89860
4.94722 4.97146 5.18649 5.20543 5.24632 5.49608 5.52859 5.75334
5.94904 6.04234 6.16303 6.24501 6.36428 6.55289 6.84047 6.99188
7.16941 7.20756 8.68908
Molecular weight = 315.14amu
Principal moments of inertia in cm(-1)
A = 0.010324 B = 0.004671 C = 0.003462
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2711.563108 B = 5992.422024 C = 8085.537141
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.094 3.906
2 N -0.714 5.714
3 C 0.442 3.558
4 N -0.561 5.561
5 C 0.187 3.813
6 C -0.238 4.238
7 C 0.000 4.000
8 C -0.287 4.287
9 C 0.584 3.416
10 O -0.541 6.541
11 N -0.632 5.632
12 C 0.296 3.704
13 C -0.300 4.300
14 C 0.058 3.942
15 C -0.061 4.061
16 N -0.328 5.328
17 N -0.368 5.368
18 C 0.273 3.727
19 C -0.558 4.558
20 H 0.046 0.954
21 C 0.031 3.969
22 N -0.912 5.912
23 Si 0.966 3.034
24 H -0.279 1.279
25 H -0.270 1.270
26 H -0.267 1.267
27 H 0.092 0.908
28 H 0.054 0.946
29 H 0.060 0.940
30 H 0.421 0.579
31 H 0.201 0.799
32 H 0.170 0.830
33 H 0.143 0.857
34 H 0.419 0.581
35 H 0.173 0.827
36 H 0.085 0.915
37 H 0.097 0.903
38 H 0.074 0.926
39 H 0.028 0.972
40 H 0.047 0.953
41 H 0.275 0.725
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -17.520 2.615 -4.853 18.366
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.050 4.050
2 N -0.354 5.354
3 C 0.202 3.798
4 N -0.280 5.280
5 C 0.027 3.973
6 C -0.261 4.261
7 C -0.026 4.026
8 C -0.299 4.299
9 C 0.376 3.624
10 O -0.420 6.420
11 N -0.278 5.278
12 C 0.074 3.926
13 C -0.332 4.332
14 C -0.107 4.107
15 C -0.119 4.119
16 N -0.153 5.153
17 N -0.154 5.154
18 C 0.154 3.846
19 C -0.596 4.596
20 H 0.064 0.936
21 C -0.171 4.171
22 N -0.549 5.549
23 Si 0.790 3.210
24 H -0.204 1.204
25 H -0.195 1.195
26 H -0.191 1.191
27 H 0.110 0.890
28 H 0.073 0.927
29 H 0.078 0.922
30 H 0.270 0.730
31 H 0.217 0.783
32 H 0.188 0.812
33 H 0.161 0.839
34 H 0.258 0.742
35 H 0.190 0.810
36 H 0.103 0.897
37 H 0.115 0.885
38 H 0.093 0.907
39 H 0.046 0.954
40 H 0.065 0.935
41 H 0.084 0.916
Dipole moment (debyes) X Y Z Total
from point charges -17.563 1.955 -4.813 18.315
hybrid contribution 1.195 0.621 0.857 1.596
sum -16.368 2.576 -3.956 17.035
Atomic orbital electron populations
1.21650 0.78232 1.03213 1.01904 1.45533 1.08161 1.05950 1.75769
1.18446 0.86363 0.87963 0.87002 1.67481 1.39939 0.97679 1.22903
1.23430 0.92693 0.95058 0.86114 1.22117 0.95305 0.99697 1.08941
1.21840 1.00908 0.91169 0.88673 1.19776 0.93525 0.93129 1.23443
1.18187 0.79943 0.89442 0.74867 1.90297 1.66978 1.32636 1.52076
1.42605 1.08287 1.06872 1.70010 1.18405 0.84217 0.88498 1.01528
1.21495 1.01725 0.88492 1.21454 1.22886 0.90101 0.98977 0.98753
1.20232 1.03770 0.84026 1.03863 1.77289 1.24180 0.86232 1.27609
1.49317 1.04821 1.05798 1.55478 1.19223 0.86904 0.81135 0.97361
1.21368 1.26547 1.19323 0.92380 0.93576 1.25637 0.93865 0.95068
1.02554 1.69974 1.25790 1.23388 1.35768 0.85485 0.78609 0.77945
0.78938 1.20410 1.19461 1.19141 0.88971 0.92684 0.92163 0.73041
0.78274 0.81233 0.83897 0.74239 0.81019 0.89687 0.88457 0.90689
0.95382 0.93509 0.91553
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.09 1.73 10.72 127.77 1.37 3.10 16
2 N -0.71 -18.22 5.73 -365.92 -2.10 -20.31 16
3 C 0.44 12.00 7.48 133.65 1.00 13.00 16
4 N -0.56 -13.16 9.55 -192.50 -1.84 -15.00 16
5 C 0.19 3.21 11.16 84.72 0.95 4.16 16
6 C -0.24 -4.15 10.08 22.32 0.23 -3.92 16
7 C 0.00 0.01 9.63 22.72 0.22 0.23 16
8 C -0.29 -8.13 5.91 -19.88 -0.12 -8.25 16
9 C 0.58 19.57 7.72 86.65 0.67 20.23 16
10 O -0.54 -19.06 10.80 -4.06 -0.04 -19.11 16
11 N -0.63 -23.07 5.37 -311.17 -1.67 -24.74 16
12 C 0.30 12.76 7.68 131.19 1.01 13.77 16
13 C -0.30 -12.18 9.58 22.14 0.21 -11.97 16
14 C 0.06 2.32 7.20 43.07 0.31 2.63 16
15 C -0.06 -1.67 10.44 71.24 0.74 -0.93 16
16 N -0.33 -15.62 12.56 -47.47 -0.60 -16.21 16
17 N -0.37 -17.82 3.62 -348.31 -1.26 -19.08 16
18 C 0.27 14.09 6.02 85.63 0.52 14.61 16
19 C -0.56 -30.56 9.39 25.60 0.24 -30.32 16
20 H 0.05 2.65 7.81 -2.91 -0.02 2.62 16
21 C 0.03 1.63 5.46 84.65 0.46 2.09 16
22 N -0.91 -49.43 13.29 21.45 0.28 -49.14 16
23 Si 0.97 41.96 29.54 68.60 2.03 43.99 16
24 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16
25 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16
26 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16
27 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16
28 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16
29 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16
30 H 0.42 11.72 5.33 -94.26 -0.50 11.21 16
31 H 0.20 1.70 8.06 -2.91 -0.02 1.67 16
32 H 0.17 1.89 8.06 -2.91 -0.02 1.86 16
33 H 0.14 3.10 6.55 -2.91 -0.02 3.08 16
34 H 0.42 14.34 6.12 -92.70 -0.57 13.77 16
35 H 0.17 6.54 5.82 -2.91 -0.02 6.53 16
36 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16
37 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16
38 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16
39 H 0.03 1.58 8.14 -2.39 -0.02 1.56 16
40 H 0.05 2.33 7.52 -2.39 -0.02 2.31 16
41 H 0.28 13.96 8.31 -92.71 -0.77 13.19 16
Total: -1.00 -69.02 350.83 2.63 -66.39
By element:
Atomic # 1 Polarization: 34.78 SS G_CDS: 0.02 Total: 34.80 kcal
Atomic # 6 Polarization: 10.62 SS G_CDS: 7.80 Total: 18.42 kcal
Atomic # 7 Polarization: -137.32 SS G_CDS: -7.18 Total: -144.50 kcal
Atomic # 8 Polarization: -19.06 SS G_CDS: -0.04 Total: -19.11 kcal
Atomic # 14 Polarization: 41.96 SS G_CDS: 2.03 Total: 43.99 kcal
Total: -69.02 2.63 -66.39 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001647587734.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 136.564 kcal
(2) G-P(sol) polarization free energy of solvation -69.020 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.545 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.627 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.393 kcal
(6) G-S(sol) free energy of system = (1) + (5) 70.171 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.85 seconds