Wall clock time and date at job start Tue Mar 31 2020 11:24:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.46980 * 2 1 4 4 H 1.08995 * 109.47390 * 55.00140 * 3 2 1 5 5 C 1.53000 * 109.47379 * 174.99816 * 3 2 1 6 6 N 1.46496 * 109.47423 * 174.99877 * 5 3 2 7 7 C 1.34782 * 120.00243 * 179.97438 * 6 5 3 8 8 O 1.21559 * 119.99617 * 0.02562 * 7 6 5 9 9 C 1.47836 * 120.00208 * 180.02562 * 7 6 5 10 10 C 1.40597 * 120.28025 * 359.97438 * 9 7 6 11 11 N 1.30824 * 121.52531 * 179.97438 * 10 9 7 12 12 C 1.33752 * 121.79183 * 0.02562 * 11 10 9 13 13 N 1.33900 * 120.61554 * 179.97438 * 12 11 10 14 14 C 1.31329 * 119.84446 * 179.97438 * 13 12 11 15 15 C 1.39760 * 120.77671 * 359.97438 * 14 13 12 16 16 N 1.31309 * 120.55754 * 0.02584 * 15 14 13 17 17 C 1.33666 * 119.70501 * 359.97438 * 16 15 14 18 18 C 1.38911 * 120.27947 * 179.97438 * 9 7 6 19 19 N 1.46504 * 109.47368 * 295.00004 * 3 2 1 20 20 C 1.36929 * 120.00047 * 84.99881 * 19 3 2 21 21 H 1.08002 * 120.00351 * 0.02562 * 20 19 3 22 22 C 1.38813 * 120.00271 * 180.02562 * 20 19 3 23 23 N 1.31622 * 119.99597 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00130 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47150 * 60.00180 * 24 22 20 26 26 H 1.48504 * 109.47109 * 180.02562 * 24 22 20 27 27 H 1.48497 * 109.47274 * 300.00062 * 24 22 20 28 28 H 1.08992 * 109.47238 * 299.99974 * 1 2 3 29 29 H 1.08996 * 109.47182 * 60.00313 * 1 2 3 30 30 H 1.09008 * 109.46549 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47122 * 240.00242 * 2 1 3 32 32 H 1.09000 * 109.46921 * 120.00115 * 2 1 3 33 33 H 1.09008 * 109.46873 * 54.99822 * 5 3 2 34 34 H 1.09003 * 109.47394 * 295.00383 * 5 3 2 35 35 H 0.96998 * 120.00295 * 0.02562 * 6 5 3 36 36 H 1.07999 * 119.23804 * 359.97438 * 10 9 7 37 37 H 1.08000 * 119.61403 * 180.02562 * 14 13 12 38 38 H 1.08002 * 119.71975 * 180.02562 * 15 14 13 39 39 H 1.07995 * 120.99898 * 359.97438 * 18 9 7 40 40 H 0.97000 * 119.99839 * 265.00108 * 19 3 2 41 41 H 0.96999 * 119.99625 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5648 1.4444 0.1258 6 7 4.0630 2.8168 0.0060 7 6 5.3856 3.0632 0.0869 8 8 6.1651 2.1464 0.2588 9 6 5.8883 4.4482 -0.0334 10 6 4.9920 5.5129 -0.2329 11 7 5.4100 6.7477 -0.3422 12 6 6.7084 7.0610 -0.2706 13 7 7.1103 8.3331 -0.3861 14 6 8.3889 8.6237 -0.3129 15 6 9.3404 7.6193 -0.1148 16 7 8.9720 6.3643 0.0015 17 6 7.6760 6.0451 -0.0697 18 6 7.2502 4.7088 0.0496 19 7 1.6524 2.0975 -1.2518 20 6 0.4156 2.6734 -1.3688 21 1 -0.2740 2.6452 -0.5382 22 6 0.0482 3.2936 -2.5551 23 7 0.8888 3.3285 -3.5673 24 14 -1.6393 4.0787 -2.7149 25 1 -1.7882 5.1446 -1.6918 26 1 -1.7844 4.6688 -4.0699 27 1 -2.6869 3.0463 -2.5103 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0278 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.9954 0.8311 -0.6659 34 1 3.8499 1.0377 1.0961 35 1 3.4409 3.5484 -0.1308 36 1 3.9338 5.3066 -0.2974 37 1 8.7089 9.6510 -0.4061 38 1 10.3874 7.8776 -0.0569 39 1 7.9609 3.9102 0.2029 40 1 2.2719 2.1232 -1.9978 41 1 0.6319 3.7616 -4.3963 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698602337.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:29 Heat of formation + Delta-G solvation = 59.509319 kcal Electronic energy + Delta-G solvation = -25239.512577 eV Core-core repulsion = 21541.237261 eV Total energy + Delta-G solvation = -3698.275316 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.94287 -39.87268 -38.16308 -36.78642 -35.28764 -33.96271 -32.48331 -32.16973 -31.46068 -29.80131 -28.18060 -26.18874 -25.36615 -23.81316 -23.06405 -22.63336 -21.29228 -20.15424 -19.29757 -18.64682 -17.97351 -17.31876 -16.62194 -15.87291 -15.81216 -15.40181 -15.24259 -14.97494 -14.70059 -14.13206 -14.02511 -13.53649 -13.25933 -13.15309 -13.04916 -12.97065 -12.70028 -12.27675 -12.05387 -12.04151 -11.50752 -11.03834 -10.97825 -10.90317 -10.77305 -10.49290 -10.24737 -10.10379 -9.96055 -9.60333 -9.57958 -9.47078 -9.04277 -8.99692 -8.81911 -7.09491 -5.85711 -3.15741 -0.36957 -0.05438 1.45236 2.14416 3.07495 3.13003 3.23550 3.38819 3.44275 3.45725 3.68225 3.75120 3.76856 4.30233 4.35724 4.50277 4.51566 4.66100 4.72509 4.93512 5.22393 5.33794 5.39009 5.49596 5.57818 5.62982 5.84462 5.89964 5.90883 6.03552 6.07938 6.36451 6.43302 6.51445 6.55303 6.62024 6.73271 6.96148 7.11801 7.20895 7.62157 7.62525 7.66912 8.25281 8.31438 9.43552 9.96895 10.32738 11.35752 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.014483 B = 0.003400 C = 0.002847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1932.820576 B = 8232.733910 C = 9832.618343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.134 4.134 3 C 0.162 3.838 4 H 0.056 0.944 5 C 0.114 3.886 6 N -0.700 5.700 7 C 0.560 3.440 8 O -0.541 6.541 9 C -0.170 4.170 10 C 0.200 3.800 11 N -0.454 5.454 12 C 0.272 3.728 13 N -0.417 5.417 14 C 0.111 3.889 15 C 0.069 3.931 16 N -0.405 5.405 17 C 0.016 3.984 18 C 0.035 3.965 19 N -0.722 5.722 20 C -0.242 4.242 21 H 0.073 0.927 22 C -0.008 4.008 23 N -0.928 5.928 24 Si 0.903 3.097 25 H -0.285 1.285 26 H -0.292 1.292 27 H -0.286 1.286 28 H 0.040 0.960 29 H 0.085 0.915 30 H 0.032 0.968 31 H 0.056 0.944 32 H 0.043 0.957 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.411 0.589 36 H 0.182 0.818 37 H 0.184 0.816 38 H 0.182 0.818 39 H 0.166 0.834 40 H 0.385 0.615 41 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.289 5.543 8.705 17.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.175 4.175 3 C 0.052 3.948 4 H 0.074 0.926 5 C -0.010 4.010 6 N -0.352 5.352 7 C 0.345 3.655 8 O -0.419 6.419 9 C -0.178 4.178 10 C 0.022 3.978 11 N -0.162 5.162 12 C 0.033 3.967 13 N -0.132 5.132 14 C -0.069 4.069 15 C -0.108 4.108 16 N -0.120 5.120 17 C -0.110 4.110 18 C 0.007 3.993 19 N -0.365 5.365 20 C -0.373 4.373 21 H 0.091 0.909 22 C -0.205 4.205 23 N -0.576 5.576 24 Si 0.734 3.266 25 H -0.212 1.212 26 H -0.218 1.218 27 H -0.213 1.213 28 H 0.059 0.941 29 H 0.104 0.896 30 H 0.051 0.949 31 H 0.075 0.925 32 H 0.062 0.938 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.249 0.751 36 H 0.199 0.801 37 H 0.201 0.799 38 H 0.199 0.801 39 H 0.183 0.817 40 H 0.219 0.781 41 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 13.904 5.548 8.698 17.314 hybrid contribution -0.471 0.185 -0.486 0.701 sum 13.434 5.732 8.212 16.756 Atomic orbital electron populations 1.21770 0.95660 0.99683 1.03296 1.22066 0.97035 0.98270 1.00080 1.20585 0.89649 0.93020 0.91586 0.92642 1.21783 0.95905 0.81797 1.01550 1.45906 1.06442 1.11485 1.71328 1.17769 0.83024 0.87038 0.77653 1.90777 1.56052 1.45134 1.49982 1.21254 0.94645 0.96050 1.05818 1.23524 1.01024 0.85779 0.87465 1.67545 1.14119 1.21116 1.13430 1.20151 0.90436 0.89924 0.96205 1.68351 1.17474 1.18008 1.09349 1.24327 0.88195 1.02090 0.92306 1.24209 1.02305 0.88637 0.95630 1.68589 1.15533 1.20384 1.07469 1.20202 0.91204 0.95705 1.03892 1.21764 0.95132 0.94511 0.87845 1.42466 1.16860 1.65900 1.11254 1.19142 0.92009 1.28087 0.98050 0.90893 1.24728 0.98015 1.01388 0.96327 1.69642 1.35245 1.48688 1.03987 0.86347 0.84213 0.79234 0.76850 1.21177 1.21780 1.21295 0.94086 0.89624 0.94866 0.92475 0.93803 0.91336 0.91354 0.75136 0.80085 0.79920 0.80058 0.81670 0.78081 0.93366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.50 9.18 37.16 0.34 -2.16 16 2 C -0.13 -2.17 5.61 -26.73 -0.15 -2.32 16 3 C 0.16 2.77 2.59 -67.93 -0.18 2.60 16 4 H 0.06 0.95 8.08 -51.93 -0.42 0.53 16 5 C 0.11 1.76 5.23 -4.04 -0.02 1.74 16 6 N -0.70 -10.56 5.34 -61.25 -0.33 -10.89 16 7 C 0.56 8.64 7.78 -12.33 -0.10 8.54 16 8 O -0.54 -9.66 16.38 5.31 0.09 -9.57 16 9 C -0.17 -2.36 5.88 -104.83 -0.62 -2.98 16 10 C 0.20 2.77 10.69 -17.09 -0.18 2.59 16 11 N -0.45 -7.07 10.39 -12.27 -0.13 -7.20 16 12 C 0.27 3.99 7.60 -157.60 -1.20 2.80 16 13 N -0.42 -5.45 10.55 -12.39 -0.13 -5.58 16 14 C 0.11 0.89 11.21 -17.20 -0.19 0.70 16 15 C 0.07 0.53 11.22 -17.21 -0.19 0.33 16 16 N -0.41 -4.63 10.46 -10.77 -0.11 -4.75 16 17 C 0.02 0.22 6.59 -84.78 -0.56 -0.34 16 18 C 0.04 0.47 9.68 -38.38 -0.37 0.10 16 19 N -0.72 -15.52 4.51 -53.43 -0.24 -15.76 16 20 C -0.24 -5.88 7.75 -15.06 -0.12 -6.00 16 21 H 0.07 1.73 7.32 -52.49 -0.38 1.35 16 22 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 23 N -0.93 -26.01 13.06 55.49 0.72 -25.29 16 24 Si 0.90 21.09 29.55 -169.99 -5.02 16.07 16 25 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 26 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 27 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 28 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.08 1.74 5.99 -51.93 -0.31 1.43 16 30 H 0.03 0.50 8.14 -51.92 -0.42 0.08 16 31 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.07 1.13 8.14 -51.92 -0.42 0.70 16 34 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.41 6.13 6.17 -40.82 -0.25 5.87 16 36 H 0.18 2.27 6.38 -52.49 -0.33 1.94 16 37 H 0.18 0.61 8.06 -52.49 -0.42 0.19 16 38 H 0.18 0.54 8.06 -52.49 -0.42 0.11 16 39 H 0.17 2.05 7.70 -52.49 -0.40 1.65 16 40 H 0.39 9.11 7.80 -40.82 -0.32 8.79 16 41 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 350.80 15.07 5.29 5.29 Total: -1.00 -32.03 350.80 -8.43 -40.47 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: -4.94 Total: 11.93 kcal Atomic # 6 Polarization: 8.92 SS G_CDS: -3.63 Total: 5.29 kcal Atomic # 7 Polarization: -69.26 SS G_CDS: -0.21 Total: -69.47 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: 0.09 Total: -9.57 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.03 -8.43 -40.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698602337.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.975 kcal (2) G-P(sol) polarization free energy of solvation -32.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.466 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds