Wall clock time and date at job start Tue Mar 31 2020 11:24:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.46980 * 2 1 4 4 H 1.08995 * 109.47390 * 55.00140 * 3 2 1 5 5 C 1.53000 * 109.47379 * 174.99816 * 3 2 1 6 6 N 1.46496 * 109.47423 * 174.99877 * 5 3 2 7 7 C 1.34782 * 120.00243 * 179.97438 * 6 5 3 8 8 O 1.21559 * 119.99617 * 0.02562 * 7 6 5 9 9 C 1.47836 * 120.00208 * 180.02562 * 7 6 5 10 10 C 1.40597 * 120.28025 * 359.97438 * 9 7 6 11 11 N 1.30824 * 121.52531 * 179.97438 * 10 9 7 12 12 C 1.33752 * 121.79183 * 0.02562 * 11 10 9 13 13 N 1.33900 * 120.61554 * 179.97438 * 12 11 10 14 14 C 1.31329 * 119.84446 * 179.97438 * 13 12 11 15 15 C 1.39760 * 120.77671 * 359.97438 * 14 13 12 16 16 N 1.31309 * 120.55754 * 0.02584 * 15 14 13 17 17 C 1.33666 * 119.70501 * 359.97438 * 16 15 14 18 18 C 1.38911 * 120.27947 * 179.97438 * 9 7 6 19 19 N 1.46504 * 109.47368 * 295.00004 * 3 2 1 20 20 C 1.36929 * 120.00047 * 84.99881 * 19 3 2 21 21 H 1.08002 * 120.00351 * 0.02562 * 20 19 3 22 22 C 1.38813 * 120.00271 * 180.02562 * 20 19 3 23 23 N 1.31622 * 119.99597 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00130 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47150 * 60.00180 * 24 22 20 26 26 H 1.48504 * 109.47109 * 180.02562 * 24 22 20 27 27 H 1.48497 * 109.47274 * 300.00062 * 24 22 20 28 28 H 1.08992 * 109.47238 * 299.99974 * 1 2 3 29 29 H 1.08996 * 109.47182 * 60.00313 * 1 2 3 30 30 H 1.09008 * 109.46549 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47122 * 240.00242 * 2 1 3 32 32 H 1.09000 * 109.46921 * 120.00115 * 2 1 3 33 33 H 1.09008 * 109.46873 * 54.99822 * 5 3 2 34 34 H 1.09003 * 109.47394 * 295.00383 * 5 3 2 35 35 H 0.96998 * 120.00295 * 0.02562 * 6 5 3 36 36 H 1.07999 * 119.23804 * 359.97438 * 10 9 7 37 37 H 1.08000 * 119.61403 * 180.02562 * 14 13 12 38 38 H 1.08002 * 119.71975 * 180.02562 * 15 14 13 39 39 H 1.07995 * 120.99898 * 359.97438 * 18 9 7 40 40 H 0.97000 * 119.99839 * 265.00108 * 19 3 2 41 41 H 0.96999 * 119.99625 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5648 1.4444 0.1258 6 7 4.0630 2.8168 0.0060 7 6 5.3856 3.0632 0.0869 8 8 6.1651 2.1464 0.2588 9 6 5.8883 4.4482 -0.0334 10 6 4.9920 5.5129 -0.2329 11 7 5.4100 6.7477 -0.3422 12 6 6.7084 7.0610 -0.2706 13 7 7.1103 8.3331 -0.3861 14 6 8.3889 8.6237 -0.3129 15 6 9.3404 7.6193 -0.1148 16 7 8.9720 6.3643 0.0015 17 6 7.6760 6.0451 -0.0697 18 6 7.2502 4.7088 0.0496 19 7 1.6524 2.0975 -1.2518 20 6 0.4156 2.6734 -1.3688 21 1 -0.2740 2.6452 -0.5382 22 6 0.0482 3.2936 -2.5551 23 7 0.8888 3.3285 -3.5673 24 14 -1.6393 4.0787 -2.7149 25 1 -1.7882 5.1446 -1.6918 26 1 -1.7844 4.6688 -4.0699 27 1 -2.6869 3.0463 -2.5103 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0278 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.9954 0.8311 -0.6659 34 1 3.8499 1.0377 1.0961 35 1 3.4409 3.5484 -0.1308 36 1 3.9338 5.3066 -0.2974 37 1 8.7089 9.6510 -0.4061 38 1 10.3874 7.8776 -0.0569 39 1 7.9609 3.9102 0.2029 40 1 2.2719 2.1232 -1.9978 41 1 0.6319 3.7616 -4.3963 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698602337.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:28 Heat of formation + Delta-G solvation = 35.684439 kcal Electronic energy + Delta-G solvation = -25240.545701 eV Core-core repulsion = 21541.237261 eV Total energy + Delta-G solvation = -3699.308440 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.84522 -41.03711 -39.19884 -38.24635 -36.16974 -35.37728 -34.17671 -33.18881 -32.39173 -31.45689 -29.57207 -27.19757 -26.32560 -25.47246 -24.21290 -23.85924 -22.41907 -21.54820 -20.35969 -19.68755 -19.13311 -18.89060 -17.68359 -17.01716 -16.91901 -16.74905 -16.20906 -16.13642 -15.77428 -15.66311 -15.41785 -14.89129 -14.56674 -14.47736 -14.19665 -13.97558 -13.94657 -13.71820 -13.05326 -12.94549 -12.87553 -12.76632 -12.72285 -12.37215 -12.12784 -12.02214 -11.82499 -11.59715 -11.30834 -11.20193 -10.84935 -10.63239 -10.39066 -10.06183 -9.93550 -8.94973 -7.85337 -5.11848 -1.26679 -0.94949 0.52747 1.20040 1.52870 1.53520 1.58569 1.94352 2.04401 2.36059 2.62044 2.79496 2.82127 2.92207 3.34423 3.45579 3.49749 3.59672 3.74898 3.88509 3.94035 3.99756 4.28556 4.31812 4.41511 4.51351 4.59848 4.60847 4.76057 4.79389 4.90894 5.12414 5.14841 5.22213 5.23758 5.41023 5.58977 5.64986 5.75807 5.79116 6.28983 6.34820 6.41163 6.71966 7.01741 7.43631 8.15440 8.39706 9.37053 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.014483 B = 0.003400 C = 0.002847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1932.820576 B = 8232.733910 C = 9832.618343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.130 4.130 3 C 0.163 3.837 4 H 0.063 0.937 5 C 0.121 3.879 6 N -0.699 5.699 7 C 0.566 3.434 8 O -0.567 6.567 9 C -0.179 4.179 10 C 0.194 3.806 11 N -0.483 5.483 12 C 0.251 3.749 13 N -0.460 5.460 14 C 0.133 3.867 15 C 0.093 3.907 16 N -0.430 5.430 17 C 0.003 3.997 18 C 0.039 3.961 19 N -0.728 5.728 20 C -0.215 4.215 21 H 0.081 0.919 22 C -0.069 4.069 23 N -0.966 5.966 24 Si 0.954 3.046 25 H -0.279 1.279 26 H -0.306 1.306 27 H -0.283 1.283 28 H 0.050 0.950 29 H 0.048 0.952 30 H 0.051 0.949 31 H 0.046 0.954 32 H 0.077 0.923 33 H 0.058 0.942 34 H 0.089 0.911 35 H 0.411 0.589 36 H 0.186 0.814 37 H 0.237 0.763 38 H 0.238 0.762 39 H 0.170 0.830 40 H 0.373 0.627 41 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.065 6.496 10.350 20.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.170 4.170 3 C 0.054 3.946 4 H 0.081 0.919 5 C -0.003 4.003 6 N -0.349 5.349 7 C 0.352 3.648 8 O -0.448 6.448 9 C -0.186 4.186 10 C 0.018 3.982 11 N -0.192 5.192 12 C 0.012 3.988 13 N -0.175 5.175 14 C -0.047 4.047 15 C -0.085 4.085 16 N -0.145 5.145 17 C -0.121 4.121 18 C 0.011 3.989 19 N -0.369 5.369 20 C -0.347 4.347 21 H 0.099 0.901 22 C -0.262 4.262 23 N -0.617 5.617 24 Si 0.786 3.214 25 H -0.205 1.205 26 H -0.233 1.233 27 H -0.210 1.210 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.095 0.905 33 H 0.076 0.924 34 H 0.107 0.893 35 H 0.249 0.751 36 H 0.202 0.798 37 H 0.253 0.747 38 H 0.254 0.746 39 H 0.187 0.813 40 H 0.205 0.795 41 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 15.628 6.445 10.402 19.849 hybrid contribution -0.783 0.024 -0.901 1.194 sum 14.845 6.469 9.501 18.775 Atomic orbital electron populations 1.21704 0.96109 1.00518 1.01808 1.21987 0.96516 0.97336 1.01169 1.20751 0.90821 0.93396 0.89614 0.91934 1.21705 0.94453 0.81932 1.02228 1.45881 1.06503 1.11412 1.71140 1.17899 0.82719 0.87367 0.76796 1.90753 1.56567 1.46040 1.51450 1.21020 0.95044 0.95003 1.07532 1.23497 1.01191 0.85625 0.87879 1.67489 1.15481 1.21690 1.14536 1.20355 0.90313 0.91090 0.97021 1.68411 1.20173 1.17305 1.11629 1.25353 0.86544 1.04616 0.88166 1.25229 1.04698 0.87062 0.91479 1.68682 1.14153 1.22535 1.09091 1.20164 0.92085 0.95235 1.04602 1.21857 0.94875 0.95024 0.87153 1.42590 1.15792 1.66090 1.12430 1.19443 0.92571 1.25289 0.97407 0.90123 1.25310 1.00639 1.03503 0.96724 1.69787 1.36732 1.50960 1.04248 0.85491 0.81448 0.78563 0.75937 1.20520 1.23336 1.20964 0.93125 0.93339 0.93021 0.93562 0.90480 0.92389 0.89323 0.75060 0.79776 0.74707 0.74586 0.81272 0.79496 0.94567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.66 9.18 71.98 0.66 -4.00 16 2 C -0.13 -3.97 5.61 30.59 0.17 -3.80 16 3 C 0.16 5.40 2.59 44.99 0.12 5.52 16 4 H 0.06 2.03 8.08 -2.39 -0.02 2.01 16 5 C 0.12 3.65 5.23 86.38 0.45 4.10 16 6 N -0.70 -21.29 5.34 -465.96 -2.49 -23.78 16 7 C 0.57 17.82 7.78 86.78 0.67 18.50 16 8 O -0.57 -20.47 16.38 -3.90 -0.06 -20.53 16 9 C -0.18 -5.15 5.88 -20.00 -0.12 -5.27 16 10 C 0.19 5.70 10.69 85.42 0.91 6.61 16 11 N -0.48 -15.65 10.39 -192.75 -2.00 -17.65 16 12 C 0.25 7.38 7.60 134.96 1.03 8.40 16 13 N -0.46 -11.40 10.55 -193.10 -2.04 -13.43 16 14 C 0.13 1.64 11.21 85.14 0.95 2.59 16 15 C 0.09 1.03 11.22 85.14 0.96 1.98 16 16 N -0.43 -8.94 10.46 -187.98 -1.97 -10.91 16 17 C 0.00 0.09 6.59 40.34 0.27 0.35 16 18 C 0.04 1.05 9.68 23.05 0.22 1.28 16 19 N -0.73 -31.47 4.51 -322.95 -1.46 -32.93 16 20 C -0.22 -10.47 7.75 84.03 0.65 -9.82 16 21 H 0.08 3.76 7.32 -2.91 -0.02 3.74 16 22 C -0.07 -3.69 5.50 84.86 0.47 -3.22 16 23 N -0.97 -55.89 13.06 21.65 0.28 -55.61 16 24 Si 0.95 44.11 29.55 68.60 2.03 46.14 16 25 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 26 H -0.31 -14.78 7.11 99.48 0.71 -14.07 16 27 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 28 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.05 1.93 5.99 -2.39 -0.01 1.92 16 30 H 0.05 1.46 8.14 -2.38 -0.02 1.44 16 31 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.06 1.90 8.14 -2.38 -0.02 1.88 16 34 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 35 H 0.41 12.55 6.17 -92.71 -0.57 11.98 16 36 H 0.19 4.97 6.38 -2.91 -0.02 4.95 16 37 H 0.24 0.19 8.06 -2.91 -0.02 0.17 16 38 H 0.24 -0.15 8.06 -2.91 -0.02 -0.17 16 39 H 0.17 4.30 7.70 -2.91 -0.02 4.28 16 40 H 0.37 18.06 7.80 -92.71 -0.72 17.34 16 41 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 Total: -1.00 -72.62 350.80 -0.49 -73.11 By element: Atomic # 1 Polarization: 32.57 SS G_CDS: -0.20 Total: 32.37 kcal Atomic # 6 Polarization: 15.81 SS G_CDS: 7.41 Total: 23.22 kcal Atomic # 7 Polarization: -144.64 SS G_CDS: -9.67 Total: -154.31 kcal Atomic # 8 Polarization: -20.47 SS G_CDS: -0.06 Total: -20.53 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Total: -72.62 -0.49 -73.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698602337.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.796 kcal (2) G-P(sol) polarization free energy of solvation -72.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds