Wall clock time and date at job start Tue Mar 31 2020 10:42:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35345 * 125.69314 * 2 1 4 4 N 1.36167 * 107.14002 * 179.89869 * 3 2 1 5 5 C 1.36217 * 133.92662 * 180.08874 * 4 3 2 6 6 C 1.35475 * 120.52683 * 180.33812 * 5 4 3 7 7 N 1.32694 * 122.11220 * 359.95248 * 6 5 4 8 8 C 1.32289 * 121.18924 * 0.02619 * 7 6 5 9 9 C 1.47803 * 120.59456 * 179.97438 * 8 7 6 10 10 O 1.21558 * 119.99927 * 180.02562 * 9 8 7 11 11 N 1.34779 * 119.99588 * 0.02562 * 9 8 7 12 12 C 1.46497 * 119.99933 * 180.02562 * 11 9 8 13 13 C 1.50695 * 109.47350 * 179.97438 * 12 11 9 14 14 C 1.31001 * 120.00394 * 127.15657 * 13 12 11 15 15 C 1.50703 * 119.99551 * 7.55827 * 14 13 12 16 16 N 1.46496 * 109.47061 * 127.00847 * 15 14 13 17 17 C 1.36933 * 120.00340 * 179.97438 * 16 15 14 18 18 H 1.08000 * 119.99819 * 359.97438 * 17 16 15 19 19 C 1.38803 * 120.00459 * 180.02562 * 17 16 15 20 20 N 1.31625 * 120.00033 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 120.00210 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47060 * 89.99919 * 21 19 17 23 23 H 1.48498 * 109.47308 * 209.99841 * 21 19 17 24 24 H 1.48492 * 109.47161 * 330.00202 * 21 19 17 25 25 C 1.37565 * 106.99532 * 0.35814 * 4 3 2 26 26 N 1.31849 * 108.10773 * 359.77466 * 25 4 3 27 27 H 1.09002 * 109.47250 * 269.71983 * 1 2 3 28 28 H 1.08999 * 109.47155 * 149.71468 * 1 2 3 29 29 H 1.09001 * 109.47083 * 29.71707 * 1 2 3 30 30 H 1.07992 * 126.43039 * 0.03529 * 3 2 1 31 31 H 1.08004 * 119.74082 * 0.31467 * 5 4 3 32 32 H 1.07997 * 118.94900 * 179.97438 * 6 5 4 33 33 H 0.96997 * 120.00192 * 359.97438 * 11 9 8 34 34 H 1.09004 * 109.47210 * 299.99657 * 12 11 9 35 35 H 1.09008 * 109.47312 * 59.99326 * 12 11 9 36 36 H 1.08008 * 119.99771 * 307.15572 * 13 12 11 37 37 H 1.07991 * 120.00266 * 187.56217 * 14 13 12 38 38 H 1.09005 * 109.47001 * 247.00750 * 15 14 13 39 39 H 1.08998 * 109.46992 * 7.00625 * 15 14 13 40 40 H 0.97007 * 120.00079 * 0.02562 * 16 15 14 41 41 H 0.96997 * 119.99968 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2966 1.0992 0.0000 4 7 3.5875 0.6660 0.0023 5 6 4.7956 1.2954 0.0049 6 6 5.9451 0.5784 -0.0001 7 7 5.9488 -0.7485 -0.0067 8 6 4.8190 -1.4367 -0.0092 9 6 4.8384 -2.9146 -0.0171 10 8 3.7938 -3.5362 -0.0199 11 7 6.0145 -3.5730 -0.0213 12 6 6.0338 -5.0378 -0.0298 13 6 7.4611 -5.5213 -0.0337 14 6 7.8624 -6.3857 0.8652 15 6 6.8630 -7.0253 1.7943 16 7 7.0044 -8.4823 1.7354 17 6 6.1963 -9.2801 2.5005 18 1 5.4549 -8.8353 3.1478 19 6 6.3306 -10.6605 2.4451 20 7 7.2351 -11.2027 1.6574 21 14 5.2286 -11.7489 3.4894 22 1 4.0001 -12.0866 2.7266 23 1 5.9532 -12.9972 3.8386 24 1 4.8564 -11.0281 4.7332 25 6 3.5502 -0.7092 -0.0046 26 7 2.2863 -1.0848 -0.0058 27 1 -0.3634 -0.0050 1.0277 28 1 -0.3633 -0.8874 -0.5183 29 1 -0.3633 0.8925 -0.5094 30 1 1.9651 2.1270 0.0005 31 1 4.8374 2.3746 0.0106 32 1 6.8887 1.1036 0.0017 33 1 6.8480 -3.0770 -0.0195 34 1 5.5252 -5.4130 0.8583 35 1 5.5244 -5.4028 -0.9217 36 1 8.1532 -5.1552 -0.7776 37 1 8.9093 -6.6398 0.9405 38 1 7.0439 -6.6837 2.8135 39 1 5.8542 -6.7456 1.4910 40 1 7.6710 -8.8818 1.1548 41 1 7.3286 -12.1674 1.6184 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699326763.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:42:28 Heat of formation + Delta-G solvation = 112.194477 kcal Electronic energy + Delta-G solvation = -24349.463317 eV Core-core repulsion = 20653.472601 eV Total energy + Delta-G solvation = -3695.990716 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.43264 -39.83581 -38.70355 -36.53031 -34.87238 -34.45535 -32.78188 -32.20308 -30.57255 -30.09048 -28.43122 -26.87055 -25.28272 -24.33996 -23.69417 -22.43308 -21.42827 -20.86472 -19.27638 -18.71431 -18.04462 -16.97887 -16.73767 -16.47913 -16.19586 -15.78288 -15.51570 -14.96459 -14.68812 -14.39691 -14.17618 -13.83209 -13.64396 -13.46863 -13.32904 -13.14971 -12.89141 -12.62374 -12.57374 -12.35792 -11.73354 -11.64790 -10.91371 -10.80779 -10.76389 -10.49787 -10.38146 -10.07603 -9.99126 -9.73212 -9.22199 -9.11921 -8.98098 -8.67179 -8.53573 -6.87226 -5.72426 -3.01370 -0.37366 0.74218 1.82722 2.28408 2.30446 2.50245 2.96982 3.36718 3.48136 3.48969 3.53875 3.55567 3.64859 3.83305 4.13632 4.56164 4.63180 4.65994 4.72726 4.77413 5.07074 5.25696 5.29666 5.32902 5.35890 5.59391 5.60910 5.61802 5.73857 5.93074 6.01377 6.12730 6.27669 6.29208 6.35835 6.58987 6.63104 6.91816 6.95067 7.19401 7.41754 7.52634 7.75262 8.13246 8.46210 9.57562 10.13609 10.49018 11.50429 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.018535 B = 0.002321 C = 0.002109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.267552 B =12059.732572 C =13273.467283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.061 3.939 3 C -0.083 4.083 4 N -0.356 5.356 5 C 0.034 3.966 6 C 0.029 3.971 7 N -0.427 5.427 8 C 0.185 3.815 9 C 0.566 3.434 10 O -0.492 6.492 11 N -0.700 5.700 12 C 0.140 3.860 13 C -0.198 4.198 14 C -0.108 4.108 15 C 0.160 3.840 16 N -0.728 5.728 17 C -0.239 4.239 18 H 0.072 0.928 19 C -0.014 4.014 20 N -0.934 5.934 21 Si 0.909 3.091 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.281 1.281 25 C 0.194 3.806 26 N -0.429 5.429 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.191 0.809 31 H 0.176 0.824 32 H 0.186 0.814 33 H 0.408 0.592 34 H 0.093 0.907 35 H 0.076 0.924 36 H 0.113 0.887 37 H 0.114 0.886 38 H 0.029 0.971 39 H 0.037 0.963 40 H 0.385 0.615 41 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.443 33.195 -5.964 34.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.073 4.073 3 C -0.216 4.216 4 N -0.030 5.030 5 C -0.092 4.092 6 C -0.112 4.112 7 N -0.143 5.143 8 C 0.019 3.981 9 C 0.348 3.652 10 O -0.364 6.364 11 N -0.353 5.353 12 C 0.019 3.981 13 C -0.218 4.218 14 C -0.127 4.127 15 C 0.034 3.966 16 N -0.372 5.372 17 C -0.370 4.370 18 H 0.090 0.910 19 C -0.210 4.210 20 N -0.582 5.582 21 Si 0.740 3.260 22 H -0.216 1.216 23 H -0.218 1.218 24 H -0.207 1.207 25 C -0.053 4.053 26 N -0.150 5.150 27 H 0.097 0.903 28 H 0.099 0.901 29 H 0.094 0.906 30 H 0.208 0.792 31 H 0.193 0.807 32 H 0.203 0.797 33 H 0.244 0.756 34 H 0.111 0.889 35 H 0.094 0.906 36 H 0.131 0.869 37 H 0.132 0.868 38 H 0.046 0.954 39 H 0.054 0.946 40 H 0.218 0.782 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -4.769 31.628 -5.840 32.515 hybrid contribution -0.167 1.032 0.307 1.089 sum -4.936 32.660 -5.533 33.491 Atomic orbital electron populations 1.20204 0.86132 1.03618 1.03249 1.21350 0.97489 0.87554 1.00892 1.22528 0.80218 1.01493 1.17366 1.42845 1.06340 1.09013 1.44815 1.22767 0.83142 1.00844 1.02413 1.22095 0.97723 0.89213 1.02178 1.68093 1.27332 1.08915 1.09917 1.22261 0.83929 0.94979 0.96937 1.17209 0.84808 0.84121 0.79111 1.90940 1.31565 1.66666 1.47207 1.45815 1.08036 1.07882 1.73541 1.20661 0.95875 0.77565 1.04024 1.22567 0.96101 1.02892 1.00206 1.23292 1.00158 0.94680 0.94601 1.20026 0.95042 0.86024 0.95530 1.42272 1.43803 0.98730 1.52391 1.19254 1.12189 0.88138 1.17453 0.91039 1.24754 0.99398 0.96653 1.00214 1.69669 1.36435 1.10350 1.41782 0.86158 0.79860 0.80180 0.79835 1.21618 1.21780 1.20710 1.22471 0.94675 0.80228 1.07959 1.70610 0.97724 1.28559 1.18098 0.90299 0.90064 0.90588 0.79243 0.80675 0.79723 0.75590 0.88924 0.90585 0.86896 0.86821 0.95380 0.94562 0.78158 0.93513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.52 10.42 36.00 0.38 -0.14 16 2 C 0.06 0.64 7.07 -82.87 -0.59 0.05 16 3 C -0.08 -0.66 11.70 -16.66 -0.19 -0.86 16 4 N -0.36 -3.35 2.95 -61.12 -0.18 -3.53 16 5 C 0.03 0.20 11.00 -16.59 -0.18 0.01 16 6 C 0.03 0.18 11.01 -18.17 -0.20 -0.02 16 7 N -0.43 -4.25 9.67 -8.68 -0.08 -4.34 16 8 C 0.18 2.40 6.97 -80.54 -0.56 1.84 16 9 C 0.57 8.63 7.81 -12.35 -0.10 8.53 16 10 O -0.49 -9.42 16.23 5.31 0.09 -9.33 16 11 N -0.70 -9.20 5.54 -62.44 -0.35 -9.55 16 12 C 0.14 2.09 5.76 -5.20 -0.03 2.06 16 13 C -0.20 -2.77 9.63 -36.03 -0.35 -3.12 16 14 C -0.11 -1.78 9.63 -36.02 -0.35 -2.13 16 15 C 0.16 3.34 6.35 -5.19 -0.03 3.31 16 16 N -0.73 -19.08 5.59 -61.09 -0.34 -19.42 16 17 C -0.24 -6.93 9.99 -15.06 -0.15 -7.08 16 18 H 0.07 2.01 7.83 -52.49 -0.41 1.60 16 19 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 20 N -0.93 -28.86 13.06 55.49 0.72 -28.13 16 21 Si 0.91 23.04 29.55 -169.99 -5.02 18.02 16 22 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 23 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 24 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 25 C 0.19 2.61 7.66 -153.98 -1.18 1.43 16 26 N -0.43 -6.38 10.74 -7.53 -0.08 -6.46 16 27 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.19 0.68 8.06 -52.49 -0.42 0.25 16 31 H 0.18 0.22 8.06 -52.48 -0.42 -0.20 16 32 H 0.19 0.43 8.06 -52.49 -0.42 0.01 16 33 H 0.41 4.40 7.84 -40.82 -0.32 4.08 16 34 H 0.09 1.58 5.30 -51.93 -0.28 1.30 16 35 H 0.08 1.18 8.14 -51.92 -0.42 0.76 16 36 H 0.11 1.31 8.06 -52.48 -0.42 0.88 16 37 H 0.11 1.77 8.06 -52.49 -0.42 1.34 16 38 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.04 0.77 5.29 -51.93 -0.27 0.50 16 40 H 0.38 10.51 7.66 -40.82 -0.31 10.20 16 41 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 358.37 15.07 5.40 5.40 Total: -1.00 -37.66 358.37 -8.43 -46.09 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: -4.96 Total: 7.90 kcal Atomic # 6 Polarization: 7.00 SS G_CDS: -3.63 Total: 3.37 kcal Atomic # 7 Polarization: -71.13 SS G_CDS: -0.31 Total: -71.44 kcal Atomic # 8 Polarization: -9.42 SS G_CDS: 0.09 Total: -9.33 kcal Atomic # 14 Polarization: 23.04 SS G_CDS: -5.02 Total: 18.02 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -37.66 -8.43 -46.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699326763.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.284 kcal (2) G-P(sol) polarization free energy of solvation -37.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.089 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds