Wall clock time and date at job start Tue Mar 31 2020 10:42:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35345 * 125.69314 * 2 1 4 4 N 1.36167 * 107.14002 * 179.89869 * 3 2 1 5 5 C 1.36217 * 133.92662 * 180.08874 * 4 3 2 6 6 C 1.35475 * 120.52683 * 180.33812 * 5 4 3 7 7 N 1.32694 * 122.11220 * 359.95248 * 6 5 4 8 8 C 1.32289 * 121.18924 * 0.02619 * 7 6 5 9 9 C 1.47803 * 120.59456 * 179.97438 * 8 7 6 10 10 O 1.21558 * 119.99927 * 180.02562 * 9 8 7 11 11 N 1.34779 * 119.99588 * 0.02562 * 9 8 7 12 12 C 1.46497 * 119.99933 * 180.02562 * 11 9 8 13 13 C 1.50695 * 109.47350 * 179.97438 * 12 11 9 14 14 C 1.31001 * 120.00394 * 127.15657 * 13 12 11 15 15 C 1.50703 * 119.99551 * 7.55827 * 14 13 12 16 16 N 1.46496 * 109.47061 * 127.00847 * 15 14 13 17 17 C 1.36933 * 120.00340 * 179.97438 * 16 15 14 18 18 H 1.08000 * 119.99819 * 359.97438 * 17 16 15 19 19 C 1.38803 * 120.00459 * 180.02562 * 17 16 15 20 20 N 1.31625 * 120.00033 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 120.00210 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47060 * 89.99919 * 21 19 17 23 23 H 1.48498 * 109.47308 * 209.99841 * 21 19 17 24 24 H 1.48492 * 109.47161 * 330.00202 * 21 19 17 25 25 C 1.37565 * 106.99532 * 0.35814 * 4 3 2 26 26 N 1.31849 * 108.10773 * 359.77466 * 25 4 3 27 27 H 1.09002 * 109.47250 * 269.71983 * 1 2 3 28 28 H 1.08999 * 109.47155 * 149.71468 * 1 2 3 29 29 H 1.09001 * 109.47083 * 29.71707 * 1 2 3 30 30 H 1.07992 * 126.43039 * 0.03529 * 3 2 1 31 31 H 1.08004 * 119.74082 * 0.31467 * 5 4 3 32 32 H 1.07997 * 118.94900 * 179.97438 * 6 5 4 33 33 H 0.96997 * 120.00192 * 359.97438 * 11 9 8 34 34 H 1.09004 * 109.47210 * 299.99657 * 12 11 9 35 35 H 1.09008 * 109.47312 * 59.99326 * 12 11 9 36 36 H 1.08008 * 119.99771 * 307.15572 * 13 12 11 37 37 H 1.07991 * 120.00266 * 187.56217 * 14 13 12 38 38 H 1.09005 * 109.47001 * 247.00750 * 15 14 13 39 39 H 1.08998 * 109.46992 * 7.00625 * 15 14 13 40 40 H 0.97007 * 120.00079 * 0.02562 * 16 15 14 41 41 H 0.96997 * 119.99968 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2966 1.0992 0.0000 4 7 3.5875 0.6660 0.0023 5 6 4.7956 1.2954 0.0049 6 6 5.9451 0.5784 -0.0001 7 7 5.9488 -0.7485 -0.0067 8 6 4.8190 -1.4367 -0.0092 9 6 4.8384 -2.9146 -0.0171 10 8 3.7938 -3.5362 -0.0199 11 7 6.0145 -3.5730 -0.0213 12 6 6.0338 -5.0378 -0.0298 13 6 7.4611 -5.5213 -0.0337 14 6 7.8624 -6.3857 0.8652 15 6 6.8630 -7.0253 1.7943 16 7 7.0044 -8.4823 1.7354 17 6 6.1963 -9.2801 2.5005 18 1 5.4549 -8.8353 3.1478 19 6 6.3306 -10.6605 2.4451 20 7 7.2351 -11.2027 1.6574 21 14 5.2286 -11.7489 3.4894 22 1 4.0001 -12.0866 2.7266 23 1 5.9532 -12.9972 3.8386 24 1 4.8564 -11.0281 4.7332 25 6 3.5502 -0.7092 -0.0046 26 7 2.2863 -1.0848 -0.0058 27 1 -0.3634 -0.0050 1.0277 28 1 -0.3633 -0.8874 -0.5183 29 1 -0.3633 0.8925 -0.5094 30 1 1.9651 2.1270 0.0005 31 1 4.8374 2.3746 0.0106 32 1 6.8887 1.1036 0.0017 33 1 6.8480 -3.0770 -0.0195 34 1 5.5252 -5.4130 0.8583 35 1 5.5244 -5.4028 -0.9217 36 1 8.1532 -5.1552 -0.7776 37 1 8.9093 -6.6398 0.9405 38 1 7.0439 -6.6837 2.8135 39 1 5.8542 -6.7456 1.4910 40 1 7.6710 -8.8818 1.1548 41 1 7.3286 -12.1674 1.6184 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699326763.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:42:28 Heat of formation + Delta-G solvation = 83.739847 kcal Electronic energy + Delta-G solvation = -24350.697202 eV Core-core repulsion = 20653.472601 eV Total energy + Delta-G solvation = -3697.224602 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.12400 -40.90295 -39.47111 -37.99156 -36.14087 -35.60377 -34.39269 -32.86679 -32.36099 -30.95436 -29.10455 -28.21293 -26.79271 -25.34323 -24.42120 -24.36745 -22.30354 -21.70863 -20.43102 -19.52630 -19.36317 -18.61072 -17.67222 -17.45782 -17.25446 -16.74604 -16.44700 -16.34752 -15.91672 -15.42872 -15.32280 -15.08345 -15.00715 -14.49887 -14.43344 -14.20159 -14.03243 -13.92719 -13.47162 -13.24906 -13.15240 -12.92539 -12.74131 -12.46609 -12.17749 -11.91199 -11.67622 -11.64854 -11.37283 -11.02819 -10.98785 -10.40732 -10.00301 -9.84897 -9.27025 -8.99574 -7.97838 -5.27295 -1.09669 0.08286 0.96897 1.26625 1.45954 1.48483 1.48967 1.56865 1.71796 2.02650 2.49892 2.55717 2.77573 2.92453 3.18238 3.35388 3.64808 3.78358 3.97989 4.06596 4.12478 4.16577 4.17572 4.23509 4.33944 4.57956 4.69589 4.80114 4.83572 4.84514 4.91359 5.01729 5.03884 5.06628 5.27821 5.45486 5.48029 5.58030 5.72160 5.85395 6.21537 6.25094 6.50876 6.74376 7.06193 7.30949 8.04384 8.29853 9.25566 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.018535 B = 0.002321 C = 0.002109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.267552 B =12059.732572 C =13273.467283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.030 3.970 3 C -0.063 4.063 4 N -0.358 5.358 5 C 0.065 3.935 6 C 0.012 3.988 7 N -0.414 5.414 8 C 0.133 3.867 9 C 0.565 3.435 10 O -0.549 6.549 11 N -0.686 5.686 12 C 0.141 3.859 13 C -0.159 4.159 14 C -0.131 4.131 15 C 0.159 3.841 16 N -0.741 5.741 17 C -0.251 4.251 18 H 0.072 0.928 19 C -0.074 4.074 20 N -0.967 5.967 21 Si 0.975 3.025 22 H -0.287 1.287 23 H -0.290 1.290 24 H -0.270 1.270 25 C 0.166 3.834 26 N -0.497 5.497 27 H 0.084 0.916 28 H 0.060 0.940 29 H 0.110 0.890 30 H 0.242 0.758 31 H 0.236 0.764 32 H 0.233 0.767 33 H 0.422 0.578 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.153 0.847 37 H 0.129 0.871 38 H 0.025 0.975 39 H 0.032 0.968 40 H 0.376 0.624 41 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.677 37.622 -6.156 38.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.102 4.102 3 C -0.195 4.195 4 N -0.032 5.032 5 C -0.060 4.060 6 C -0.130 4.130 7 N -0.130 5.130 8 C -0.030 4.030 9 C 0.348 3.652 10 O -0.424 6.424 11 N -0.339 5.339 12 C 0.018 3.982 13 C -0.178 4.178 14 C -0.150 4.150 15 C 0.033 3.967 16 N -0.383 5.383 17 C -0.382 4.382 18 H 0.090 0.910 19 C -0.266 4.266 20 N -0.618 5.618 21 Si 0.804 3.196 22 H -0.214 1.214 23 H -0.216 1.216 24 H -0.195 1.195 25 C -0.082 4.082 26 N -0.218 5.218 27 H 0.102 0.898 28 H 0.079 0.921 29 H 0.129 0.871 30 H 0.259 0.741 31 H 0.252 0.748 32 H 0.249 0.751 33 H 0.260 0.740 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.170 0.830 37 H 0.146 0.854 38 H 0.043 0.957 39 H 0.049 0.951 40 H 0.209 0.791 41 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -3.995 36.093 -6.022 36.809 hybrid contribution -0.405 -0.016 0.329 0.522 sum -4.401 36.077 -5.693 36.788 Atomic orbital electron populations 1.20295 0.84484 1.04326 1.03774 1.22021 0.98955 0.87706 1.01536 1.23270 0.79061 1.02711 1.14427 1.43182 1.08029 1.07807 1.44142 1.23829 0.81394 1.03380 0.97417 1.22982 1.00094 0.87852 1.02059 1.68010 1.26165 1.11038 1.07762 1.21579 0.85103 0.93556 1.02789 1.17653 0.84220 0.85599 0.77684 1.90889 1.33339 1.68269 1.49924 1.45594 1.08350 1.06963 1.72988 1.20481 0.96415 0.78876 1.02415 1.22755 0.95525 1.00470 0.99003 1.23046 0.99858 0.96637 0.95447 1.20096 0.96353 0.83563 0.96641 1.42464 1.43186 1.00838 1.51860 1.19628 1.12217 0.88959 1.17431 0.90985 1.25598 1.01150 0.98014 1.01878 1.69815 1.38139 1.10362 1.43444 0.85116 0.77849 0.78156 0.78502 1.21403 1.21597 1.19520 1.22451 0.94303 0.82269 1.09139 1.70513 0.99387 1.31427 1.20510 0.89768 0.92077 0.87131 0.74137 0.74818 0.75121 0.73984 0.91595 0.91387 0.82967 0.85362 0.95731 0.95075 0.79142 0.93808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.97 10.42 71.23 0.74 -0.23 16 2 C 0.03 0.62 7.07 41.63 0.29 0.92 16 3 C -0.06 -0.80 11.70 83.35 0.98 0.17 16 4 N -0.36 -5.76 2.95 -347.30 -1.02 -6.78 16 5 C 0.06 0.43 11.00 83.37 0.92 1.34 16 6 C 0.01 0.10 11.01 83.92 0.92 1.02 16 7 N -0.41 -7.57 9.67 -181.37 -1.75 -9.32 16 8 C 0.13 3.55 6.97 43.69 0.30 3.86 16 9 C 0.56 18.45 7.81 86.77 0.68 19.13 16 10 O -0.55 -23.14 16.23 -3.90 -0.06 -23.20 16 11 N -0.69 -18.57 5.54 -469.74 -2.60 -21.17 16 12 C 0.14 4.35 5.76 85.63 0.49 4.84 16 13 C -0.16 -4.27 9.63 25.64 0.25 -4.02 16 14 C -0.13 -4.28 9.63 25.65 0.25 -4.04 16 15 C 0.16 6.85 6.35 85.63 0.54 7.39 16 16 N -0.74 -40.00 5.59 -347.19 -1.94 -41.94 16 17 C -0.25 -14.86 9.99 84.03 0.84 -14.02 16 18 H 0.07 4.16 7.83 -2.91 -0.02 4.13 16 19 C -0.07 -4.44 5.50 84.86 0.47 -3.97 16 20 N -0.97 -60.99 13.06 21.65 0.28 -60.71 16 21 Si 0.98 48.15 29.55 68.60 2.03 50.18 16 22 H -0.29 -13.98 7.11 99.48 0.71 -13.28 16 23 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 24 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 25 C 0.17 4.53 7.66 135.58 1.04 5.57 16 26 N -0.50 -15.69 10.74 -177.73 -1.91 -17.59 16 27 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.24 0.30 8.06 -2.91 -0.02 0.28 16 31 H 0.24 -1.29 8.06 -2.91 -0.02 -1.31 16 32 H 0.23 -0.32 8.06 -2.91 -0.02 -0.34 16 33 H 0.42 8.82 7.84 -92.71 -0.73 8.10 16 34 H 0.07 2.42 5.30 -2.39 -0.01 2.40 16 35 H 0.07 2.23 8.14 -2.38 -0.02 2.21 16 36 H 0.15 3.02 8.06 -2.91 -0.02 2.99 16 37 H 0.13 3.86 8.06 -2.91 -0.02 3.84 16 38 H 0.02 1.08 8.14 -2.38 -0.02 1.06 16 39 H 0.03 1.40 5.29 -2.39 -0.01 1.38 16 40 H 0.38 21.19 7.66 -92.70 -0.71 20.48 16 41 H 0.25 15.36 8.31 -92.71 -0.77 14.59 16 Total: -1.00 -90.18 358.37 1.38 -88.80 By element: Atomic # 1 Polarization: 24.13 SS G_CDS: -0.35 Total: 23.78 kcal Atomic # 6 Polarization: 9.25 SS G_CDS: 8.71 Total: 17.96 kcal Atomic # 7 Polarization: -148.57 SS G_CDS: -8.95 Total: -157.52 kcal Atomic # 8 Polarization: -23.14 SS G_CDS: -0.06 Total: -23.20 kcal Atomic # 14 Polarization: 48.15 SS G_CDS: 2.03 Total: 50.18 kcal Total: -90.18 1.38 -88.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699326763.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.541 kcal (2) G-P(sol) polarization free energy of solvation -90.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.801 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds