Wall clock time and date at job start Tue Mar 31 2020 10:42:31
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50703 * 1
3 3 C 1.35341 * 125.69400 * 2 1
4 4 N 1.36159 * 107.14233 * 179.90259 * 3 2 1
5 5 C 1.36219 * 133.92720 * 180.08704 * 4 3 2
6 6 C 1.35485 * 120.52662 * 180.33361 * 5 4 3
7 7 N 1.32690 * 122.11005 * 359.96267 * 6 5 4
8 8 C 1.32299 * 121.19229 * 0.02562 * 7 6 5
9 9 C 1.47802 * 120.59280 * 179.97438 * 8 7 6
10 10 O 1.21561 * 119.99427 * 180.02562 * 9 8 7
11 11 N 1.34772 * 119.99824 * 0.02562 * 9 8 7
12 12 C 1.46501 * 119.99510 * 180.02562 * 11 9 8
13 13 C 1.50702 * 109.46996 * 179.97438 * 12 11 9
14 14 C 1.31000 * 120.00116 * 124.99870 * 13 12 11
15 15 C 1.50702 * 120.00116 * 179.97438 * 14 13 12
16 16 N 1.46507 * 109.46942 * 124.99946 * 15 14 13
17 17 C 1.36928 * 119.99860 * 179.97438 * 16 15 14
18 18 H 1.08001 * 120.00290 * 0.02562 * 17 16 15
19 19 C 1.38812 * 120.00367 * 180.02562 * 17 16 15
20 20 N 1.31614 * 120.00401 * 180.02562 * 19 17 16
21 21 Si 1.86806 * 119.99552 * 0.02562 * 19 17 16
22 22 H 1.48501 * 109.46867 * 89.99673 * 21 19 17
23 23 H 1.48498 * 109.47080 * 209.99779 * 21 19 17
24 24 H 1.48500 * 109.46933 * 330.00180 * 21 19 17
25 25 C 1.37565 * 106.99415 * 0.35521 * 4 3 2
26 26 N 1.31853 * 108.10571 * 359.77739 * 25 4 3
27 27 H 1.09002 * 109.47152 * 269.71559 * 1 2 3
28 28 H 1.09001 * 109.46980 * 149.71659 * 1 2 3
29 29 H 1.09004 * 109.47113 * 29.71640 * 1 2 3
30 30 H 1.08002 * 126.42421 * 0.03584 * 3 2 1
31 31 H 1.08004 * 119.74160 * 0.31592 * 5 4 3
32 32 H 1.07996 * 118.94487 * 179.97438 * 6 5 4
33 33 H 0.96997 * 120.00052 * 359.97438 * 11 9 8
34 34 H 1.08995 * 109.47615 * 299.99616 * 12 11 9
35 35 H 1.09002 * 109.47361 * 60.00395 * 12 11 9
36 36 H 1.07997 * 120.00075 * 305.00170 * 13 12 11
37 37 H 1.07997 * 119.99809 * 0.02562 * 14 13 12
38 38 H 1.08995 * 109.47001 * 245.00149 * 15 14 13
39 39 H 1.09000 * 109.46962 * 5.00514 * 15 14 13
40 40 H 0.96996 * 119.99879 * 0.02562 * 16 15 14
41 41 H 0.97001 * 119.99912 * 180.02562 * 20 19 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.2967 1.0992 0.0000
4 7 3.5875 0.6660 0.0022
5 6 4.7956 1.2954 0.0047
6 6 5.9451 0.5784 -0.0002
7 7 5.9488 -0.7485 -0.0069
8 6 4.8190 -1.4368 -0.0096
9 6 4.8385 -2.9146 -0.0177
10 8 3.7938 -3.5362 -0.0205
11 7 6.0145 -3.5730 -0.0219
12 6 6.0338 -5.0378 -0.0304
13 6 7.4611 -5.5214 -0.0343
14 6 7.8734 -6.3532 0.8899
15 6 9.3006 -6.8372 0.8857
16 7 9.9161 -6.5540 2.1847
17 6 11.2186 -6.9071 2.4166
18 1 11.7923 -7.3940 1.6419
19 6 11.8017 -6.6393 3.6475
20 7 13.0538 -6.9782 3.8703
21 14 10.8092 -5.7977 4.9878
22 1 10.1241 -6.8237 5.8145
23 1 11.7172 -4.9956 5.8464
24 1 9.7972 -4.9052 4.3678
25 6 3.5501 -0.7092 -0.0046
26 7 2.2862 -1.0847 -0.0058
27 1 -0.3633 -0.0051 1.0277
28 1 -0.3633 -0.8874 -0.5182
29 1 -0.3633 0.8926 -0.5094
30 1 1.9651 2.1270 0.0005
31 1 4.8374 2.3746 0.0105
32 1 6.8887 1.1037 0.0015
33 1 6.8480 -3.0769 -0.0200
34 1 5.5251 -5.4131 0.8575
35 1 5.5246 -5.4027 -0.9224
36 1 8.1441 -5.1821 -0.7989
37 1 7.1903 -6.6928 1.6543
38 1 9.3194 -7.9113 0.7011
39 1 9.8560 -6.3238 0.1008
40 1 9.4007 -6.1170 2.8806
41 1 13.4611 -6.7914 4.7306
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001699326764.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:42:31
Heat of formation + Delta-G solvation = 107.194940 kcal
Electronic energy + Delta-G solvation = -24207.358554 eV
Core-core repulsion = 20511.151042 eV
Total energy + Delta-G solvation = -3696.207512 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 315.144 amu
Computer time = 0.80 seconds
Orbital eigenvalues (eV)
-43.48021 -39.92924 -38.75865 -36.41254 -34.93774 -34.81484 -32.84563 -32.26038
-31.02046 -30.24998 -28.51126 -27.57839 -25.36802 -23.94779 -23.66779 -21.73236
-21.39134 -20.95544 -19.85275 -18.87370 -18.45543 -17.56914 -16.82961 -16.77744
-16.12226 -15.78444 -15.38374 -14.94725 -14.71483 -14.51665 -14.21215 -13.98128
-13.79469 -13.63119 -13.43770 -13.20484 -12.89523 -12.69428 -12.66582 -12.19066
-12.08105 -11.73977 -11.33296 -10.87358 -10.84226 -10.68904 -10.56827 -10.21433
-10.12722 -9.61008 -9.38185 -9.24206 -9.04808 -8.78007 -8.68129 -7.24421
-5.77453 -3.13475 -0.41861 0.70707 1.77761 2.16535 2.24823 2.41309
2.88922 3.29046 3.38480 3.42007 3.43044 3.45959 3.60051 3.78805
4.09586 4.52261 4.58399 4.59243 4.67449 4.72773 4.86563 5.17967
5.22190 5.23791 5.26260 5.50867 5.52132 5.54307 5.57986 5.65927
5.76504 5.90749 6.06906 6.21806 6.24739 6.38427 6.50314 6.81257
6.90232 7.04030 7.33557 7.42372 7.98130 7.99224 8.41323 9.20105
9.92315 10.12133 11.40696
Molecular weight = 315.14amu
Principal moments of inertia in cm(-1)
A = 0.018738 B = 0.002333 C = 0.002219
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1493.962332 B =11999.095771 C =12612.750750
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.074 4.074
2 C 0.059 3.941
3 C -0.082 4.082
4 N -0.356 5.356
5 C 0.036 3.964
6 C 0.030 3.970
7 N -0.423 5.423
8 C 0.179 3.821
9 C 0.570 3.430
10 O -0.499 6.499
11 N -0.702 5.702
12 C 0.154 3.846
13 C -0.195 4.195
14 C -0.115 4.115
15 C 0.177 3.823
16 N -0.753 5.753
17 C -0.246 4.246
18 H 0.091 0.909
19 C 0.004 3.996
20 N -0.933 5.933
21 Si 0.885 3.115
22 H -0.284 1.284
23 H -0.291 1.291
24 H -0.276 1.276
25 C 0.195 3.805
26 N -0.432 5.432
27 H 0.078 0.922
28 H 0.080 0.920
29 H 0.076 0.924
30 H 0.191 0.809
31 H 0.177 0.823
32 H 0.188 0.812
33 H 0.413 0.587
34 H 0.074 0.926
35 H 0.078 0.922
36 H 0.119 0.881
37 H 0.110 0.890
38 H 0.040 0.960
39 H 0.034 0.966
40 H 0.362 0.638
41 H 0.260 0.740
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -23.286 21.401 -10.979 33.478
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.131 4.131
2 C -0.074 4.074
3 C -0.215 4.215
4 N -0.029 5.029
5 C -0.090 4.090
6 C -0.110 4.110
7 N -0.138 5.138
8 C 0.014 3.986
9 C 0.352 3.648
10 O -0.371 6.371
11 N -0.355 5.355
12 C 0.032 3.968
13 C -0.214 4.214
14 C -0.134 4.134
15 C 0.051 3.949
16 N -0.399 5.399
17 C -0.376 4.376
18 H 0.109 0.891
19 C -0.192 4.192
20 N -0.581 5.581
21 Si 0.715 3.285
22 H -0.210 1.210
23 H -0.217 1.217
24 H -0.202 1.202
25 C -0.053 4.053
26 N -0.153 5.153
27 H 0.097 0.903
28 H 0.099 0.901
29 H 0.094 0.906
30 H 0.208 0.792
31 H 0.195 0.805
32 H 0.205 0.795
33 H 0.250 0.750
34 H 0.092 0.908
35 H 0.096 0.904
36 H 0.137 0.863
37 H 0.128 0.872
38 H 0.057 0.943
39 H 0.052 0.948
40 H 0.195 0.805
41 H 0.070 0.930
Dipole moment (debyes) X Y Z Total
from point charges -23.230 19.806 -11.024 32.457
hybrid contribution -0.476 2.430 1.101 2.710
sum -23.706 22.236 -9.923 33.984
Atomic orbital electron populations
1.20198 0.86141 1.03589 1.03205 1.21333 0.97456 0.87580 1.01027
1.22537 0.80202 1.01532 1.17280 1.42837 1.06370 1.09004 1.44738
1.22806 0.83066 1.00930 1.02163 1.22145 0.97845 0.89133 1.01913
1.68105 1.27277 1.09044 1.09373 1.22184 0.83974 0.94891 0.97596
1.17209 0.84652 0.84249 0.78689 1.90907 1.31613 1.66828 1.47734
1.45847 1.08390 1.07779 1.73443 1.20424 0.95367 0.78282 1.02749
1.22725 0.95912 1.01378 1.01427 1.23363 0.98060 0.95745 0.96258
1.19793 0.87689 0.98044 0.89402 1.42645 1.12216 1.73404 1.11594
1.19064 0.86619 1.32589 0.99282 0.89119 1.24677 0.95967 1.00984
0.97523 1.69702 1.11859 1.52661 1.23890 0.86534 0.79562 0.79683
0.82698 1.21024 1.21708 1.20243 1.22450 0.94625 0.80282 1.07923
1.70584 0.97701 1.28593 1.18394 0.90341 0.90146 0.90556 0.79221
0.80537 0.79536 0.75044 0.90774 0.90443 0.86349 0.87230 0.94256
0.94804 0.80505 0.93026
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -0.46 10.42 36.01 0.38 -0.08 16
2 C 0.06 0.59 7.07 -82.87 -0.59 0.01 16
3 C -0.08 -0.63 11.70 -16.66 -0.19 -0.83 16
4 N -0.36 -3.30 2.95 -61.12 -0.18 -3.48 16
5 C 0.04 0.22 11.00 -16.59 -0.18 0.03 16
6 C 0.03 0.21 11.01 -18.16 -0.20 0.01 16
7 N -0.42 -4.43 9.67 -8.68 -0.08 -4.51 16
8 C 0.18 2.29 6.97 -80.53 -0.56 1.73 16
9 C 0.57 8.14 7.81 -12.35 -0.10 8.04 16
10 O -0.50 -8.63 16.23 5.31 0.09 -8.54 16
11 N -0.70 -8.73 5.54 -62.44 -0.35 -9.08 16
12 C 0.15 1.89 6.11 -5.19 -0.03 1.86 16
13 C -0.20 -2.51 9.24 -36.02 -0.33 -2.85 16
14 C -0.11 -1.74 9.24 -36.02 -0.33 -2.08 16
15 C 0.18 3.38 6.70 -5.19 -0.03 3.35 16
16 N -0.75 -18.06 5.40 -61.08 -0.33 -18.39 16
17 C -0.25 -7.02 10.47 -15.06 -0.16 -7.18 16
18 H 0.09 2.75 8.06 -52.49 -0.42 2.33 16
19 C 0.00 0.13 5.50 -17.43 -0.10 0.03 16
20 N -0.93 -29.43 13.97 55.49 0.78 -28.66 16
21 Si 0.89 22.30 27.74 -169.99 -4.71 17.58 16
22 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16
23 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16
24 H -0.28 -6.58 6.52 56.52 0.37 -6.21 16
25 C 0.19 2.53 7.66 -153.98 -1.18 1.35 16
26 N -0.43 -6.08 10.74 -7.53 -0.08 -6.16 16
27 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16
28 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16
29 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16
30 H 0.19 0.64 8.06 -52.49 -0.42 0.22 16
31 H 0.18 0.28 8.06 -52.48 -0.42 -0.15 16
32 H 0.19 0.62 8.06 -52.49 -0.42 0.20 16
33 H 0.41 4.67 7.84 -40.82 -0.32 4.35 16
34 H 0.07 0.95 7.79 -51.93 -0.40 0.55 16
35 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16
36 H 0.12 1.44 7.84 -52.49 -0.41 1.03 16
37 H 0.11 1.59 7.84 -52.49 -0.41 1.18 16
38 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16
39 H 0.03 0.64 7.79 -51.93 -0.40 0.24 16
40 H 0.36 8.51 5.52 -40.82 -0.23 8.29 16
41 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16
LS Contribution 359.74 15.07 5.42 5.42
Total: -1.00 -37.61 359.74 -8.22 -45.83
By element:
Atomic # 1 Polarization: 11.73 SS G_CDS: -5.15 Total: 6.58 kcal
Atomic # 6 Polarization: 7.02 SS G_CDS: -3.61 Total: 3.41 kcal
Atomic # 7 Polarization: -70.03 SS G_CDS: -0.25 Total: -70.28 kcal
Atomic # 8 Polarization: -8.63 SS G_CDS: 0.09 Total: -8.54 kcal
Atomic # 14 Polarization: 22.30 SS G_CDS: -4.71 Total: 17.58 kcal
Total LS contribution 5.42 Total: 5.42 kcal
Total: -37.61 -8.22 -45.83 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001699326764.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 153.022 kcal
(2) G-P(sol) polarization free energy of solvation -37.612 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.411 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.216 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.827 kcal
(6) G-S(sol) free energy of system = (1) + (5) 107.195 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.80 seconds