Wall clock time and date at job start Tue Mar 31 2020 10:42:30
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50703 * 1
3 3 C 1.35341 * 125.69400 * 2 1
4 4 N 1.36159 * 107.14233 * 179.90259 * 3 2 1
5 5 C 1.36219 * 133.92720 * 180.08704 * 4 3 2
6 6 C 1.35485 * 120.52662 * 180.33361 * 5 4 3
7 7 N 1.32690 * 122.11005 * 359.96267 * 6 5 4
8 8 C 1.32299 * 121.19229 * 0.02562 * 7 6 5
9 9 C 1.47802 * 120.59280 * 179.97438 * 8 7 6
10 10 O 1.21561 * 119.99427 * 180.02562 * 9 8 7
11 11 N 1.34772 * 119.99824 * 0.02562 * 9 8 7
12 12 C 1.46501 * 119.99510 * 180.02562 * 11 9 8
13 13 C 1.50702 * 109.46996 * 179.97438 * 12 11 9
14 14 C 1.31000 * 120.00116 * 124.99870 * 13 12 11
15 15 C 1.50702 * 120.00116 * 179.97438 * 14 13 12
16 16 N 1.46507 * 109.46942 * 124.99946 * 15 14 13
17 17 C 1.36928 * 119.99860 * 179.97438 * 16 15 14
18 18 H 1.08001 * 120.00290 * 0.02562 * 17 16 15
19 19 C 1.38812 * 120.00367 * 180.02562 * 17 16 15
20 20 N 1.31614 * 120.00401 * 180.02562 * 19 17 16
21 21 Si 1.86806 * 119.99552 * 0.02562 * 19 17 16
22 22 H 1.48501 * 109.46867 * 89.99673 * 21 19 17
23 23 H 1.48498 * 109.47080 * 209.99779 * 21 19 17
24 24 H 1.48500 * 109.46933 * 330.00180 * 21 19 17
25 25 C 1.37565 * 106.99415 * 0.35521 * 4 3 2
26 26 N 1.31853 * 108.10571 * 359.77739 * 25 4 3
27 27 H 1.09002 * 109.47152 * 269.71559 * 1 2 3
28 28 H 1.09001 * 109.46980 * 149.71659 * 1 2 3
29 29 H 1.09004 * 109.47113 * 29.71640 * 1 2 3
30 30 H 1.08002 * 126.42421 * 0.03584 * 3 2 1
31 31 H 1.08004 * 119.74160 * 0.31592 * 5 4 3
32 32 H 1.07996 * 118.94487 * 179.97438 * 6 5 4
33 33 H 0.96997 * 120.00052 * 359.97438 * 11 9 8
34 34 H 1.08995 * 109.47615 * 299.99616 * 12 11 9
35 35 H 1.09002 * 109.47361 * 60.00395 * 12 11 9
36 36 H 1.07997 * 120.00075 * 305.00170 * 13 12 11
37 37 H 1.07997 * 119.99809 * 0.02562 * 14 13 12
38 38 H 1.08995 * 109.47001 * 245.00149 * 15 14 13
39 39 H 1.09000 * 109.46962 * 5.00514 * 15 14 13
40 40 H 0.96996 * 119.99879 * 0.02562 * 16 15 14
41 41 H 0.97001 * 119.99912 * 180.02562 * 20 19 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.2967 1.0992 0.0000
4 7 3.5875 0.6660 0.0022
5 6 4.7956 1.2954 0.0047
6 6 5.9451 0.5784 -0.0002
7 7 5.9488 -0.7485 -0.0069
8 6 4.8190 -1.4368 -0.0096
9 6 4.8385 -2.9146 -0.0177
10 8 3.7938 -3.5362 -0.0205
11 7 6.0145 -3.5730 -0.0219
12 6 6.0338 -5.0378 -0.0304
13 6 7.4611 -5.5214 -0.0343
14 6 7.8734 -6.3532 0.8899
15 6 9.3006 -6.8372 0.8857
16 7 9.9161 -6.5540 2.1847
17 6 11.2186 -6.9071 2.4166
18 1 11.7923 -7.3940 1.6419
19 6 11.8017 -6.6393 3.6475
20 7 13.0538 -6.9782 3.8703
21 14 10.8092 -5.7977 4.9878
22 1 10.1241 -6.8237 5.8145
23 1 11.7172 -4.9956 5.8464
24 1 9.7972 -4.9052 4.3678
25 6 3.5501 -0.7092 -0.0046
26 7 2.2862 -1.0847 -0.0058
27 1 -0.3633 -0.0051 1.0277
28 1 -0.3633 -0.8874 -0.5182
29 1 -0.3633 0.8926 -0.5094
30 1 1.9651 2.1270 0.0005
31 1 4.8374 2.3746 0.0105
32 1 6.8887 1.1037 0.0015
33 1 6.8480 -3.0769 -0.0200
34 1 5.5251 -5.4131 0.8575
35 1 5.5246 -5.4027 -0.9224
36 1 8.1441 -5.1821 -0.7989
37 1 7.1903 -6.6928 1.6543
38 1 9.3194 -7.9113 0.7011
39 1 9.8560 -6.3238 0.1008
40 1 9.4007 -6.1170 2.8806
41 1 13.4611 -6.7914 4.7306
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001699326764.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:42:30
Heat of formation + Delta-G solvation = 79.168527 kcal
Electronic energy + Delta-G solvation = -24208.573870 eV
Core-core repulsion = 20511.151042 eV
Total energy + Delta-G solvation = -3697.422829 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 315.144 amu
Computer time = 0.86 seconds
Orbital eigenvalues (eV)
-44.13904 -40.89389 -39.48098 -37.79123 -36.33909 -35.62003 -34.42079 -32.95572
-32.76428 -31.01498 -29.26184 -28.77789 -26.45387 -25.16846 -24.42078 -23.42788
-22.25884 -21.75020 -21.06050 -19.72589 -19.51200 -19.19914 -17.65937 -17.48509
-17.00309 -16.63346 -16.46625 -16.36953 -16.02608 -15.49340 -15.30863 -15.06738
-14.88739 -14.57209 -14.45569 -14.26487 -14.02590 -13.87850 -13.58089 -13.40813
-13.15094 -12.98479 -12.78739 -12.47012 -12.20237 -11.96964 -11.79013 -11.66361
-11.39709 -11.09963 -11.00200 -10.45293 -10.07335 -9.86900 -9.30043 -9.28859
-8.03614 -5.37678 -1.11204 0.06427 0.94901 1.25157 1.38620 1.41342
1.46225 1.48949 1.70231 2.02658 2.47891 2.48092 2.75982 2.90659
3.16849 3.27858 3.62296 3.64070 3.89750 3.95922 4.05383 4.11278
4.14710 4.22140 4.44904 4.63290 4.65396 4.70741 4.80389 4.84171
4.90711 4.99703 5.01129 5.02524 5.21965 5.47716 5.63987 5.69906
5.70976 5.83458 6.18775 6.20432 6.46649 6.71476 7.00546 7.06450
7.81890 8.01638 9.17606
Molecular weight = 315.14amu
Principal moments of inertia in cm(-1)
A = 0.018738 B = 0.002333 C = 0.002219
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1493.962332 B =11999.095771 C =12612.750750
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.071 4.071
2 C 0.032 3.968
3 C -0.064 4.064
4 N -0.358 5.358
5 C 0.065 3.935
6 C 0.010 3.990
7 N -0.420 5.420
8 C 0.132 3.868
9 C 0.569 3.431
10 O -0.543 6.543
11 N -0.695 5.695
12 C 0.156 3.844
13 C -0.158 4.158
14 C -0.133 4.133
15 C 0.176 3.824
16 N -0.757 5.757
17 C -0.237 4.237
18 H 0.059 0.941
19 C -0.064 4.064
20 N -0.982 5.982
21 Si 0.957 3.043
22 H -0.279 1.279
23 H -0.294 1.294
24 H -0.252 1.252
25 C 0.166 3.834
26 N -0.491 5.491
27 H 0.084 0.916
28 H 0.063 0.937
29 H 0.109 0.891
30 H 0.240 0.760
31 H 0.234 0.766
32 H 0.227 0.773
33 H 0.419 0.581
34 H 0.069 0.931
35 H 0.085 0.915
36 H 0.131 0.869
37 H 0.118 0.882
38 H 0.037 0.963
39 H 0.037 0.963
40 H 0.367 0.633
41 H 0.259 0.741
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -24.836 25.538 -11.115 37.317
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.128 4.128
2 C -0.100 4.100
3 C -0.196 4.196
4 N -0.032 5.032
5 C -0.060 4.060
6 C -0.131 4.131
7 N -0.136 5.136
8 C -0.031 4.031
9 C 0.353 3.647
10 O -0.419 6.419
11 N -0.347 5.347
12 C 0.033 3.967
13 C -0.178 4.178
14 C -0.153 4.153
15 C 0.050 3.950
16 N -0.402 5.402
17 C -0.368 4.368
18 H 0.077 0.923
19 C -0.256 4.256
20 N -0.632 5.632
21 Si 0.784 3.216
22 H -0.205 1.205
23 H -0.220 1.220
24 H -0.177 1.177
25 C -0.082 4.082
26 N -0.213 5.213
27 H 0.103 0.897
28 H 0.082 0.918
29 H 0.127 0.873
30 H 0.257 0.743
31 H 0.250 0.750
32 H 0.243 0.757
33 H 0.257 0.743
34 H 0.087 0.913
35 H 0.103 0.897
36 H 0.149 0.851
37 H 0.135 0.865
38 H 0.054 0.946
39 H 0.055 0.945
40 H 0.200 0.800
41 H 0.068 0.932
Dipole moment (debyes) X Y Z Total
from point charges -24.816 23.934 -11.200 36.250
hybrid contribution 0.014 1.295 0.994 1.632
sum -24.802 25.229 -10.206 36.821
Atomic orbital electron populations
1.20298 0.84278 1.04406 1.03821 1.22025 0.98983 0.87615 1.01425
1.23288 0.79049 1.02837 1.14453 1.43166 1.07945 1.07959 1.44177
1.23763 0.81433 1.03278 0.97516 1.22911 1.00051 0.87973 1.02212
1.68026 1.26567 1.11061 1.07899 1.21709 0.84943 0.93998 1.02499
1.17520 0.84205 0.85339 0.77618 1.90861 1.32954 1.68053 1.50013
1.45753 1.08351 1.07653 1.72973 1.20382 0.94817 0.78504 1.02984
1.22773 0.96015 0.98881 1.00089 1.23034 0.96064 0.97938 0.98222
1.19883 0.89829 0.98084 0.87160 1.42675 1.10720 1.73244 1.13611
1.19062 0.88241 1.31141 0.98388 0.92302 1.25528 0.97170 1.02567
1.00310 1.69881 1.13997 1.54770 1.24599 0.85385 0.78263 0.78785
0.79205 1.20513 1.22024 1.17701 1.22453 0.94350 0.82159 1.09196
1.70498 0.99087 1.31226 1.20442 0.89716 0.91776 0.87283 0.74335
0.74977 0.75699 0.74341 0.91251 0.89689 0.85119 0.86453 0.94562
0.94530 0.80020 0.93249
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -0.81 10.42 71.24 0.74 -0.06 16
2 C 0.03 0.60 7.07 41.63 0.29 0.90 16
3 C -0.06 -0.77 11.70 83.35 0.98 0.20 16
4 N -0.36 -5.67 2.95 -347.29 -1.02 -6.69 16
5 C 0.07 0.49 11.00 83.38 0.92 1.41 16
6 C 0.01 0.10 11.01 83.93 0.92 1.03 16
7 N -0.42 -8.20 9.67 -181.36 -1.75 -9.95 16
8 C 0.13 3.41 6.97 43.69 0.30 3.71 16
9 C 0.57 16.87 7.81 86.77 0.68 17.55 16
10 O -0.54 -19.96 16.23 -3.91 -0.06 -20.03 16
11 N -0.69 -17.17 5.54 -469.75 -2.60 -19.78 16
12 C 0.16 3.73 6.11 85.63 0.52 4.25 16
13 C -0.16 -3.83 9.24 25.65 0.24 -3.59 16
14 C -0.13 -3.87 9.24 25.65 0.24 -3.63 16
15 C 0.18 6.61 6.70 85.63 0.57 7.18 16
16 N -0.76 -35.83 5.40 -347.17 -1.87 -37.71 16
17 C -0.24 -13.74 10.47 84.03 0.88 -12.86 16
18 H 0.06 3.70 8.06 -2.91 -0.02 3.68 16
19 C -0.06 -3.83 5.50 84.86 0.47 -3.36 16
20 N -0.98 -63.36 13.97 21.65 0.30 -63.06 16
21 Si 0.96 45.99 27.74 68.60 1.90 47.89 16
22 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16
23 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16
24 H -0.25 -11.01 6.52 99.48 0.65 -10.36 16
25 C 0.17 4.31 7.66 135.58 1.04 5.34 16
26 N -0.49 -14.28 10.74 -177.73 -1.91 -16.18 16
27 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16
28 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16
29 H 0.11 0.46 8.14 -2.38 -0.02 0.44 16
30 H 0.24 0.21 8.06 -2.91 -0.02 0.19 16
31 H 0.23 -0.97 8.06 -2.91 -0.02 -1.00 16
32 H 0.23 0.39 8.06 -2.91 -0.02 0.36 16
33 H 0.42 9.15 7.84 -92.71 -0.73 8.42 16
34 H 0.07 1.77 7.79 -2.39 -0.02 1.75 16
35 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16
36 H 0.13 2.89 7.84 -2.91 -0.02 2.86 16
37 H 0.12 3.25 7.84 -2.91 -0.02 3.23 16
38 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16
39 H 0.04 1.36 7.79 -2.39 -0.02 1.34 16
40 H 0.37 16.61 5.52 -92.71 -0.51 16.10 16
41 H 0.26 15.85 8.31 -92.71 -0.77 15.07 16
Total: -1.00 -87.76 359.74 1.55 -86.21
By element:
Atomic # 1 Polarization: 21.45 SS G_CDS: -0.22 Total: 21.23 kcal
Atomic # 6 Polarization: 9.27 SS G_CDS: 8.79 Total: 18.07 kcal
Atomic # 7 Polarization: -144.51 SS G_CDS: -8.86 Total: -153.37 kcal
Atomic # 8 Polarization: -19.96 SS G_CDS: -0.06 Total: -20.03 kcal
Atomic # 14 Polarization: 45.99 SS G_CDS: 1.90 Total: 47.89 kcal
Total: -87.76 1.55 -86.21 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001699326764.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 165.382 kcal
(2) G-P(sol) polarization free energy of solvation -87.763 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.619 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.549 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.214 kcal
(6) G-S(sol) free energy of system = (1) + (5) 79.169 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.86 seconds