Wall clock time and date at job start Tue Mar 31 2020 10:42:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.39961 * 120.32242 * 2 1 4 4 N 1.31503 * 120.10322 * 180.02562 * 3 2 1 5 5 C 1.33376 * 120.85543 * 0.02562 * 4 3 2 6 6 C 1.40809 * 132.47950 * 179.97438 * 5 4 3 7 7 C 1.46578 * 126.53761 * 0.02562 * 6 5 4 8 8 O 1.21722 * 120.00088 * 0.02562 * 7 6 5 9 9 N 1.34773 * 119.99953 * 179.97438 * 7 6 5 10 10 C 1.46501 * 119.99969 * 179.97438 * 9 7 6 11 11 C 1.52998 * 109.47130 * 174.42736 * 10 9 7 12 12 N 1.46498 * 115.54890 * 324.36499 * 11 10 9 13 13 C 1.36939 * 120.00190 * 295.00107 * 12 11 10 14 14 H 1.07995 * 119.99706 * 356.86999 * 13 12 11 15 15 C 1.38815 * 119.99644 * 176.86224 * 13 12 11 16 16 N 1.31615 * 120.00402 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99464 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47329 * 60.00134 * 17 15 13 19 19 H 1.48503 * 109.47272 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47406 * 300.00142 * 17 15 13 21 21 C 1.52997 * 117.49983 * 110.03649 * 11 10 9 22 22 C 1.53001 * 117.49875 * 178.69642 * 11 10 9 23 23 C 1.40649 * 106.92052 * 180.28120 * 6 5 4 24 24 N 1.30698 * 108.72718 * 359.55201 * 23 6 5 25 25 N 1.36594 * 120.79985 * 0.02562 * 5 4 3 26 26 C 1.35754 * 120.31888 * 180.02562 * 2 1 3 27 27 H 1.09003 * 109.46528 * 90.00127 * 1 2 3 28 28 H 1.08993 * 109.47282 * 210.00678 * 1 2 3 29 29 H 1.09004 * 109.46895 * 330.00839 * 1 2 3 30 30 H 1.08002 * 119.94824 * 0.02562 * 3 2 1 31 31 H 0.96998 * 120.00192 * 0.02562 * 9 7 6 32 32 H 1.08998 * 109.47403 * 54.42759 * 10 9 7 33 33 H 1.09003 * 109.47430 * 294.42846 * 10 9 7 34 34 H 0.97009 * 119.99770 * 115.28163 * 12 11 10 35 35 H 0.96997 * 120.00054 * 179.97438 * 16 15 13 36 36 H 1.08995 * 117.50200 * 215.00275 * 21 11 10 37 37 H 1.09008 * 117.50179 * 0.02562 * 21 11 10 38 38 H 1.08994 * 117.49936 * 359.97404 * 22 11 10 39 39 H 1.09006 * 117.49947 * 144.97389 * 22 11 10 40 40 H 1.07991 * 125.63082 * 179.70304 * 23 6 5 41 41 H 1.07999 * 120.42476 * 359.95463 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2137 1.2081 0.0000 4 7 3.5287 1.2031 -0.0005 5 6 4.2084 0.0555 -0.0015 6 6 5.5865 -0.2335 -0.0027 7 6 6.6823 0.7401 -0.0026 8 8 6.4372 1.9323 -0.0009 9 7 7.9613 0.3151 -0.0033 10 6 9.0565 1.2881 -0.0038 11 6 10.3913 0.5535 0.1355 12 7 10.3729 -0.6331 0.9944 13 6 10.1241 -0.5044 2.3348 14 1 9.9915 0.4761 2.7677 15 6 10.0420 -1.6342 3.1371 16 7 10.2039 -2.8291 2.6096 17 14 9.7018 -1.4586 4.9655 18 1 8.3945 -0.7825 5.1631 19 1 9.6639 -2.8038 5.5934 20 1 10.7772 -0.6498 5.5937 21 6 11.3145 0.5284 -1.0843 22 6 11.6670 1.3982 0.1250 23 6 5.7110 -1.6344 -0.0101 24 7 4.5152 -2.1620 -0.0034 25 7 3.5553 -1.1442 -0.0026 26 6 2.1924 -1.1719 -0.0005 27 1 -0.3632 0.0000 -1.0277 28 1 -0.3633 -0.8899 0.5139 29 1 -0.3633 0.8901 0.5137 30 1 1.6781 2.1460 0.0004 31 1 8.1566 -0.6350 -0.0043 32 1 8.9315 1.9762 0.8322 33 1 9.0454 1.8473 -0.9394 34 1 10.5410 -1.5096 0.6143 35 1 10.1469 -3.6186 3.1703 36 1 11.9082 -0.3709 -1.2478 37 1 10.9711 1.0356 -1.9860 38 1 11.5553 2.4772 0.0184 39 1 12.4924 1.0713 0.7574 40 1 6.6409 -2.1834 -0.0173 41 1 1.6646 -2.1141 -0.0002 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754527917.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:42:54 Heat of formation + Delta-G solvation = 124.505414 kcal Electronic energy + Delta-G solvation = -25640.048233 eV Core-core repulsion = 21944.591359 eV Total energy + Delta-G solvation = -3695.456874 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.50108 -39.05757 -38.21988 -37.23641 -34.47244 -33.43928 -33.06763 -32.66836 -29.84635 -29.63900 -27.57667 -26.07118 -24.94428 -23.88729 -22.95749 -22.05478 -21.77996 -19.85501 -19.15882 -18.45878 -17.33795 -17.05823 -16.71811 -16.29436 -15.75660 -15.37656 -14.67482 -14.35518 -14.26438 -14.11895 -13.89562 -13.66694 -13.51064 -13.13372 -13.03083 -12.92577 -12.74667 -12.49301 -12.23297 -11.82796 -11.50103 -11.09636 -10.96530 -10.88685 -10.85602 -10.29216 -10.24484 -9.90398 -9.72810 -9.55570 -9.31896 -9.26409 -8.83970 -8.31293 -7.89251 -7.08505 -5.83740 -3.14045 0.28097 0.62813 1.85245 2.25203 3.08613 3.42967 3.47118 3.49469 3.68156 3.71222 3.98683 4.09103 4.12422 4.37915 4.48978 4.60243 4.61419 5.01428 5.09035 5.11095 5.17189 5.29940 5.36295 5.37000 5.50586 5.53441 5.63001 5.76036 5.80989 5.99144 6.15200 6.18332 6.29085 6.39755 6.49666 6.51775 6.67899 6.82945 7.20126 7.27032 7.50969 7.72938 8.31336 8.34285 8.95972 9.46379 9.97682 10.33889 11.37740 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.013783 B = 0.003881 C = 0.003362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2031.031785 B = 7213.502410 C = 8325.770548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.194 4.194 3 C 0.181 3.819 4 N -0.433 5.433 5 C 0.306 3.694 6 C -0.272 4.272 7 C 0.591 3.409 8 O -0.548 6.548 9 N -0.698 5.698 10 C 0.157 3.843 11 C 0.129 3.871 12 N -0.688 5.688 13 C -0.232 4.232 14 H 0.071 0.929 15 C -0.007 4.007 16 N -0.932 5.932 17 Si 0.904 3.096 18 H -0.286 1.286 19 H -0.291 1.291 20 H -0.285 1.285 21 C -0.186 4.186 22 C -0.192 4.192 23 C 0.136 3.864 24 N -0.311 5.311 25 N -0.306 5.306 26 C 0.160 3.840 27 H 0.077 0.923 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.181 0.819 31 H 0.405 0.595 32 H 0.066 0.934 33 H 0.057 0.943 34 H 0.388 0.612 35 H 0.256 0.744 36 H 0.090 0.910 37 H 0.088 0.912 38 H 0.082 0.918 39 H 0.094 0.906 40 H 0.210 0.790 41 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.238 3.488 -8.798 19.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.201 4.201 3 C -0.003 4.003 4 N -0.143 5.143 5 C 0.075 3.925 6 C -0.288 4.288 7 C 0.377 3.623 8 O -0.428 6.428 9 N -0.349 5.349 10 C 0.030 3.970 11 C 0.035 3.965 12 N -0.329 5.329 13 C -0.363 4.363 14 H 0.089 0.911 15 C -0.203 4.203 16 N -0.580 5.580 17 Si 0.735 3.265 18 H -0.213 1.213 19 H -0.217 1.217 20 H -0.212 1.212 21 C -0.224 4.224 22 C -0.233 4.233 23 C -0.045 4.045 24 N -0.133 5.133 25 N -0.074 5.074 26 C 0.024 3.976 27 H 0.096 0.904 28 H 0.092 0.908 29 H 0.098 0.902 30 H 0.198 0.802 31 H 0.242 0.758 32 H 0.084 0.916 33 H 0.075 0.925 34 H 0.223 0.777 35 H 0.066 0.934 36 H 0.109 0.891 37 H 0.106 0.894 38 H 0.101 0.899 39 H 0.113 0.887 40 H 0.227 0.773 41 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -17.290 3.846 -8.590 19.686 hybrid contribution 0.072 -0.843 1.094 1.383 sum -17.218 3.003 -7.496 19.017 Atomic orbital electron populations 1.20592 0.87604 1.03937 1.03189 1.20559 0.99024 0.92414 1.08075 1.23556 0.89073 0.98430 0.89270 1.68323 1.08316 1.24127 1.13498 1.20362 0.93194 0.81136 0.97796 1.19585 0.90244 0.93764 1.25206 1.16703 0.81766 0.87034 0.76748 1.90784 1.84278 1.16220 1.51480 1.45472 1.04178 1.11212 1.74023 1.21006 0.85003 0.90547 1.00394 1.20232 0.88854 0.92603 0.94825 1.41790 1.84063 1.02383 1.04619 1.19102 1.40713 0.92771 0.83693 0.91142 1.24685 1.02461 0.95210 0.97988 1.69627 1.56635 0.96848 1.34901 0.86317 0.78263 0.76474 0.85475 1.21256 1.21718 1.21205 1.23189 1.04515 1.02424 0.92247 1.23364 1.01993 0.96832 1.01098 1.24343 0.96645 0.92546 0.90964 1.77634 0.96427 1.07934 1.31331 1.47053 1.06043 1.08063 1.46284 1.21913 0.79515 1.01138 0.95046 0.90405 0.90849 0.90224 0.80204 0.75788 0.91618 0.92502 0.77689 0.93395 0.89133 0.89389 0.89907 0.88746 0.77337 0.80294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.34 10.03 36.01 0.36 0.03 16 2 C -0.19 -1.52 5.86 -104.86 -0.61 -2.14 16 3 C 0.18 1.83 10.97 -17.05 -0.19 1.64 16 4 N -0.43 -6.87 10.26 -12.00 -0.12 -7.00 16 5 C 0.31 5.28 7.74 -155.84 -1.21 4.07 16 6 C -0.27 -5.04 6.17 -104.65 -0.65 -5.69 16 7 C 0.59 12.15 7.78 -12.90 -0.10 12.05 16 8 O -0.55 -12.76 16.73 5.17 0.09 -12.68 16 9 N -0.70 -13.54 5.38 -61.65 -0.33 -13.87 16 10 C 0.16 3.00 5.69 -4.04 -0.02 2.98 16 11 C 0.13 2.48 2.46 -131.82 -0.32 2.15 16 12 N -0.69 -15.92 4.49 -47.23 -0.21 -16.13 16 13 C -0.23 -6.11 9.81 -15.06 -0.15 -6.26 16 14 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 15 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 16 N -0.93 -26.43 13.06 55.49 0.72 -25.70 16 17 Si 0.90 22.32 29.55 -169.99 -5.02 17.29 16 18 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 19 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 20 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 21 C -0.19 -3.02 10.11 -26.70 -0.27 -3.29 16 22 C -0.19 -3.36 10.18 -26.69 -0.27 -3.63 16 23 C 0.14 2.23 11.44 -17.12 -0.20 2.03 16 24 N -0.31 -4.98 12.58 30.76 0.39 -4.59 16 25 N -0.31 -4.49 3.86 -11.97 -0.05 -4.54 16 26 C 0.16 1.57 10.94 -16.45 -0.18 1.39 16 27 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 28 H 0.07 0.19 8.08 -51.93 -0.42 -0.23 16 29 H 0.08 0.19 8.10 -51.93 -0.42 -0.23 16 30 H 0.18 1.09 8.06 -52.49 -0.42 0.67 16 31 H 0.41 7.71 6.70 -40.82 -0.27 7.44 16 32 H 0.07 1.37 8.13 -51.93 -0.42 0.95 16 33 H 0.06 1.00 7.91 -51.93 -0.41 0.59 16 34 H 0.39 9.43 8.03 -40.82 -0.33 9.10 16 35 H 0.26 7.17 8.31 -40.82 -0.34 6.84 16 36 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 37 H 0.09 1.25 8.06 -51.92 -0.42 0.83 16 38 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 39 H 0.09 1.77 8.14 -51.93 -0.42 1.35 16 40 H 0.21 3.01 7.46 -52.49 -0.39 2.62 16 41 H 0.18 1.12 8.06 -52.49 -0.42 0.70 16 LS Contribution 359.22 15.07 5.41 5.41 Total: -1.00 -34.92 359.22 -8.19 -43.12 By element: Atomic # 1 Polarization: 18.81 SS G_CDS: -5.17 Total: 13.64 kcal Atomic # 6 Polarization: 8.95 SS G_CDS: -3.90 Total: 5.05 kcal Atomic # 7 Polarization: -72.23 SS G_CDS: 0.40 Total: -71.83 kcal Atomic # 8 Polarization: -12.76 SS G_CDS: 0.09 Total: -12.68 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.92 -8.19 -43.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754527917.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.622 kcal (2) G-P(sol) polarization free energy of solvation -34.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.116 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds