Wall clock time and date at job start Tue Mar 31 2020 10:42:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.39961 * 120.32242 * 2 1 4 4 N 1.31503 * 120.10322 * 180.02562 * 3 2 1 5 5 C 1.33376 * 120.85543 * 0.02562 * 4 3 2 6 6 C 1.40809 * 132.47950 * 179.97438 * 5 4 3 7 7 C 1.46578 * 126.53761 * 0.02562 * 6 5 4 8 8 O 1.21722 * 120.00088 * 0.02562 * 7 6 5 9 9 N 1.34773 * 119.99953 * 179.97438 * 7 6 5 10 10 C 1.46501 * 119.99969 * 179.97438 * 9 7 6 11 11 C 1.52998 * 109.47130 * 174.42736 * 10 9 7 12 12 N 1.46498 * 115.54890 * 324.36499 * 11 10 9 13 13 C 1.36939 * 120.00190 * 295.00107 * 12 11 10 14 14 H 1.07995 * 119.99706 * 356.86999 * 13 12 11 15 15 C 1.38815 * 119.99644 * 176.86224 * 13 12 11 16 16 N 1.31615 * 120.00402 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99464 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47329 * 60.00134 * 17 15 13 19 19 H 1.48503 * 109.47272 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47406 * 300.00142 * 17 15 13 21 21 C 1.52997 * 117.49983 * 110.03649 * 11 10 9 22 22 C 1.53001 * 117.49875 * 178.69642 * 11 10 9 23 23 C 1.40649 * 106.92052 * 180.28120 * 6 5 4 24 24 N 1.30698 * 108.72718 * 359.55201 * 23 6 5 25 25 N 1.36594 * 120.79985 * 0.02562 * 5 4 3 26 26 C 1.35754 * 120.31888 * 180.02562 * 2 1 3 27 27 H 1.09003 * 109.46528 * 90.00127 * 1 2 3 28 28 H 1.08993 * 109.47282 * 210.00678 * 1 2 3 29 29 H 1.09004 * 109.46895 * 330.00839 * 1 2 3 30 30 H 1.08002 * 119.94824 * 0.02562 * 3 2 1 31 31 H 0.96998 * 120.00192 * 0.02562 * 9 7 6 32 32 H 1.08998 * 109.47403 * 54.42759 * 10 9 7 33 33 H 1.09003 * 109.47430 * 294.42846 * 10 9 7 34 34 H 0.97009 * 119.99770 * 115.28163 * 12 11 10 35 35 H 0.96997 * 120.00054 * 179.97438 * 16 15 13 36 36 H 1.08995 * 117.50200 * 215.00275 * 21 11 10 37 37 H 1.09008 * 117.50179 * 0.02562 * 21 11 10 38 38 H 1.08994 * 117.49936 * 359.97404 * 22 11 10 39 39 H 1.09006 * 117.49947 * 144.97389 * 22 11 10 40 40 H 1.07991 * 125.63082 * 179.70304 * 23 6 5 41 41 H 1.07999 * 120.42476 * 359.95463 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2137 1.2081 0.0000 4 7 3.5287 1.2031 -0.0005 5 6 4.2084 0.0555 -0.0015 6 6 5.5865 -0.2335 -0.0027 7 6 6.6823 0.7401 -0.0026 8 8 6.4372 1.9323 -0.0009 9 7 7.9613 0.3151 -0.0033 10 6 9.0565 1.2881 -0.0038 11 6 10.3913 0.5535 0.1355 12 7 10.3729 -0.6331 0.9944 13 6 10.1241 -0.5044 2.3348 14 1 9.9915 0.4761 2.7677 15 6 10.0420 -1.6342 3.1371 16 7 10.2039 -2.8291 2.6096 17 14 9.7018 -1.4586 4.9655 18 1 8.3945 -0.7825 5.1631 19 1 9.6639 -2.8038 5.5934 20 1 10.7772 -0.6498 5.5937 21 6 11.3145 0.5284 -1.0843 22 6 11.6670 1.3982 0.1250 23 6 5.7110 -1.6344 -0.0101 24 7 4.5152 -2.1620 -0.0034 25 7 3.5553 -1.1442 -0.0026 26 6 2.1924 -1.1719 -0.0005 27 1 -0.3632 0.0000 -1.0277 28 1 -0.3633 -0.8899 0.5139 29 1 -0.3633 0.8901 0.5137 30 1 1.6781 2.1460 0.0004 31 1 8.1566 -0.6350 -0.0043 32 1 8.9315 1.9762 0.8322 33 1 9.0454 1.8473 -0.9394 34 1 10.5410 -1.5096 0.6143 35 1 10.1469 -3.6186 3.1703 36 1 11.9082 -0.3709 -1.2478 37 1 10.9711 1.0356 -1.9860 38 1 11.5553 2.4772 0.0184 39 1 12.4924 1.0713 0.7574 40 1 6.6409 -2.1834 -0.0173 41 1 1.6646 -2.1141 -0.0002 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754527917.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:42:53 Heat of formation + Delta-G solvation = 99.906249 kcal Electronic energy + Delta-G solvation = -25641.114933 eV Core-core repulsion = 21944.591359 eV Total energy + Delta-G solvation = -3696.523574 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.56796 -40.48746 -39.34469 -38.76767 -35.41017 -35.05382 -34.91624 -33.60367 -31.58941 -30.99450 -28.54292 -27.23925 -25.91670 -25.84469 -24.11261 -23.18140 -23.11564 -21.21779 -20.69244 -19.61076 -19.08567 -18.36382 -17.99743 -17.38982 -17.18227 -16.49031 -16.31830 -16.02964 -15.64294 -15.36739 -15.04342 -14.91734 -14.56613 -14.43608 -14.38426 -13.88623 -13.77817 -13.54532 -13.40132 -13.07137 -12.91860 -12.83552 -12.68407 -12.28861 -12.18883 -12.10912 -11.88788 -11.71004 -10.98673 -10.87729 -10.84788 -10.59203 -10.50086 -9.86584 -9.07187 -9.00784 -7.93382 -5.20937 -0.64885 -0.31519 0.85868 0.98108 1.44162 1.45581 1.50741 2.05944 2.34455 2.53934 2.58852 2.76647 2.93856 3.11436 3.39453 3.42225 3.66937 3.72445 3.84090 3.91959 3.94407 4.14461 4.20949 4.36238 4.41623 4.46862 4.82337 4.86081 4.88750 4.90863 4.92779 5.01379 5.05778 5.06812 5.17952 5.25110 5.41067 5.43071 5.57644 5.68015 6.13070 6.29194 6.52984 6.78010 7.36839 7.42004 8.06859 8.33516 9.27907 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.013783 B = 0.003881 C = 0.003362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2031.031785 B = 7213.502410 C = 8325.770548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.166 4.166 3 C 0.191 3.809 4 N -0.489 5.489 5 C 0.300 3.700 6 C -0.323 4.323 7 C 0.589 3.411 8 O -0.587 6.587 9 N -0.696 5.696 10 C 0.163 3.837 11 C 0.100 3.900 12 N -0.692 5.692 13 C -0.221 4.221 14 H 0.060 0.940 15 C -0.057 4.057 16 N -0.956 5.956 17 Si 0.952 3.048 18 H -0.293 1.293 19 H -0.292 1.292 20 H -0.281 1.281 21 C -0.156 4.156 22 C -0.187 4.187 23 C 0.138 3.862 24 N -0.326 5.326 25 N -0.306 5.306 26 C 0.141 3.859 27 H 0.097 0.903 28 H 0.090 0.910 29 H 0.098 0.902 30 H 0.222 0.778 31 H 0.406 0.594 32 H 0.040 0.960 33 H 0.075 0.925 34 H 0.381 0.619 35 H 0.251 0.749 36 H 0.092 0.908 37 H 0.117 0.883 38 H 0.105 0.895 39 H 0.080 0.920 40 H 0.216 0.784 41 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.916 3.996 -9.620 22.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.172 4.172 3 C 0.011 3.989 4 N -0.201 5.201 5 C 0.066 3.934 6 C -0.340 4.340 7 C 0.378 3.622 8 O -0.469 6.469 9 N -0.346 5.346 10 C 0.037 3.963 11 C 0.007 3.993 12 N -0.332 5.332 13 C -0.352 4.352 14 H 0.078 0.922 15 C -0.250 4.250 16 N -0.606 5.606 17 Si 0.783 3.217 18 H -0.220 1.220 19 H -0.219 1.219 20 H -0.208 1.208 21 C -0.193 4.193 22 C -0.227 4.227 23 C -0.043 4.043 24 N -0.148 5.148 25 N -0.073 5.073 26 C 0.006 3.994 27 H 0.115 0.885 28 H 0.109 0.891 29 H 0.117 0.883 30 H 0.239 0.761 31 H 0.243 0.757 32 H 0.059 0.941 33 H 0.093 0.907 34 H 0.215 0.785 35 H 0.060 0.940 36 H 0.111 0.889 37 H 0.135 0.865 38 H 0.123 0.877 39 H 0.098 0.902 40 H 0.233 0.767 41 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -19.996 4.371 -9.430 22.535 hybrid contribution 0.608 -0.870 1.287 1.668 sum -19.387 3.501 -8.143 21.317 Atomic orbital electron populations 1.20791 0.83556 1.05793 1.04884 1.21135 1.01290 0.90680 1.04092 1.24487 0.87643 1.01239 0.85543 1.68373 1.10962 1.23949 1.16769 1.20423 0.93253 0.82406 0.97279 1.19471 0.90687 0.94139 1.29663 1.17038 0.82363 0.87006 0.75810 1.90726 1.84833 1.17714 1.53666 1.45470 1.04161 1.11199 1.73787 1.20958 0.84875 0.90263 1.00227 1.20412 0.89530 0.92298 0.97024 1.41744 1.84065 1.03396 1.03966 1.19194 1.38734 0.92051 0.85253 0.92177 1.25197 1.03770 0.95265 1.00756 1.69727 1.58432 0.96999 1.35452 0.85546 0.77655 0.76068 0.82461 1.21982 1.21851 1.20783 1.23270 1.01810 1.02084 0.92138 1.23366 0.99705 0.98114 1.01521 1.24370 0.97253 0.91918 0.90746 1.77516 0.96471 1.08538 1.32280 1.47243 1.07415 1.06937 1.45749 1.22898 0.77770 1.03779 0.94907 0.88495 0.89134 0.88315 0.76127 0.75716 0.94128 0.90679 0.78528 0.94017 0.88933 0.86472 0.87698 0.90173 0.76749 0.76644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.15 10.03 71.24 0.71 0.56 16 2 C -0.17 -2.00 5.86 -20.02 -0.12 -2.11 16 3 C 0.19 3.37 10.97 85.16 0.93 4.31 16 4 N -0.49 -15.43 10.26 -191.87 -1.97 -17.40 16 5 C 0.30 10.56 7.74 133.99 1.04 11.60 16 6 C -0.32 -12.62 6.17 -19.88 -0.12 -12.74 16 7 C 0.59 25.54 7.78 86.42 0.67 26.21 16 8 O -0.59 -28.67 16.73 -4.42 -0.07 -28.75 16 9 N -0.70 -28.17 5.38 -467.16 -2.52 -30.69 16 10 C 0.16 6.35 5.69 86.38 0.49 6.84 16 11 C 0.10 3.82 2.46 3.60 0.01 3.83 16 12 N -0.69 -32.57 4.49 -303.35 -1.36 -33.94 16 13 C -0.22 -11.86 9.81 84.03 0.82 -11.03 16 14 H 0.06 3.32 7.83 -2.91 -0.02 3.30 16 15 C -0.06 -3.16 5.50 84.86 0.47 -2.69 16 16 N -0.96 -55.30 13.06 21.65 0.28 -55.01 16 17 Si 0.95 46.76 29.55 68.60 2.03 48.78 16 18 H -0.29 -14.55 7.11 99.48 0.71 -13.84 16 19 H -0.29 -14.32 7.11 99.48 0.71 -13.61 16 20 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 21 C -0.16 -4.75 10.11 30.62 0.31 -4.44 16 22 C -0.19 -6.30 10.18 30.62 0.31 -5.99 16 23 C 0.14 4.76 11.44 85.45 0.98 5.74 16 24 N -0.33 -10.60 12.58 -56.58 -0.71 -11.31 16 25 N -0.31 -8.85 3.86 -191.79 -0.74 -9.59 16 26 C 0.14 2.40 10.94 83.42 0.91 3.32 16 27 H 0.10 -0.05 8.14 -2.39 -0.02 -0.07 16 28 H 0.09 -0.04 8.08 -2.39 -0.02 -0.06 16 29 H 0.10 -0.10 8.10 -2.39 -0.02 -0.12 16 30 H 0.22 1.80 8.06 -2.91 -0.02 1.77 16 31 H 0.41 16.21 6.70 -92.71 -0.62 15.59 16 32 H 0.04 1.76 8.13 -2.39 -0.02 1.74 16 33 H 0.08 2.62 7.91 -2.39 -0.02 2.60 16 34 H 0.38 18.88 8.03 -92.70 -0.74 18.14 16 35 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 36 H 0.09 2.83 8.14 -2.39 -0.02 2.81 16 37 H 0.12 2.94 8.06 -2.38 -0.02 2.92 16 38 H 0.10 3.06 8.14 -2.39 -0.02 3.04 16 39 H 0.08 2.95 8.14 -2.38 -0.02 2.93 16 40 H 0.22 6.68 7.46 -2.92 -0.02 6.66 16 41 H 0.22 1.90 8.06 -2.91 -0.02 1.88 16 Total: -1.00 -80.10 359.22 2.08 -78.02 By element: Atomic # 1 Polarization: 36.75 SS G_CDS: -0.28 Total: 36.46 kcal Atomic # 6 Polarization: 15.98 SS G_CDS: 7.42 Total: 23.41 kcal Atomic # 7 Polarization: -150.91 SS G_CDS: -7.02 Total: -157.93 kcal Atomic # 8 Polarization: -28.67 SS G_CDS: -0.07 Total: -28.75 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 2.03 Total: 48.78 kcal Total: -80.10 2.08 -78.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754527917.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.931 kcal (2) G-P(sol) polarization free energy of solvation -80.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.025 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds