Wall clock time and date at job start Tue Mar 31 2020 11:36:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.28776 * 125.86691 * 2 1 4 4 N 1.28699 * 111.75497 * 179.97438 * 3 2 1 5 5 C 1.34390 * 109.15120 * 0.02562 * 4 3 2 6 6 C 1.37209 * 125.86577 * 179.69579 * 2 1 3 7 7 N 1.32208 * 134.67477 * 0.81016 * 6 2 1 8 8 C 1.31581 * 121.86845 * 179.57112 * 7 6 2 9 9 C 1.38620 * 121.63922 * 359.65354 * 8 7 6 10 10 C 1.39455 * 119.36945 * 0.02567 * 9 8 7 11 11 C 1.47881 * 121.11001 * 180.02562 * 10 9 8 12 12 O 1.21547 * 120.00090 * 127.39435 * 11 10 9 13 13 N 1.34772 * 119.99688 * 307.38782 * 11 10 9 14 14 C 1.46930 * 120.63208 * 3.64136 * 13 11 10 15 15 C 1.52765 * 109.00681 * 233.58046 * 14 13 11 16 16 C 1.53041 * 109.38471 * 305.58490 * 15 14 13 17 17 C 1.50697 * 109.46028 * 181.26045 * 16 15 14 18 18 H 1.08005 * 120.00282 * 239.93450 * 17 16 15 19 19 C 1.37872 * 120.00273 * 59.93306 * 17 16 15 20 20 N 1.31525 * 119.99674 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 120.00460 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47048 * 59.99862 * 21 19 17 23 23 H 1.48498 * 109.47374 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47109 * 300.00184 * 21 19 17 25 25 C 1.53040 * 109.53539 * 61.24296 * 16 15 14 26 26 C 1.46928 * 120.63067 * 183.91579 * 13 11 10 27 27 H 1.08991 * 109.47342 * 90.02150 * 1 2 3 28 28 H 1.09002 * 109.47291 * 210.02320 * 1 2 3 29 29 H 1.09005 * 109.47074 * 330.02033 * 1 2 3 30 30 H 1.08004 * 119.18056 * 179.67517 * 8 7 6 31 31 H 1.07995 * 120.31396 * 179.97438 * 9 8 7 32 32 H 1.09003 * 109.58498 * 353.41462 * 14 13 11 33 33 H 1.08994 * 109.58709 * 113.83962 * 14 13 11 34 34 H 1.08997 * 109.56404 * 185.54666 * 15 14 13 35 35 H 1.09002 * 109.35898 * 65.49757 * 15 14 13 36 36 H 1.08991 * 109.45763 * 301.22094 * 16 15 14 37 37 H 0.96994 * 119.99759 * 180.02562 * 20 19 17 38 38 H 1.08994 * 109.49940 * 178.68395 * 25 16 15 39 39 H 1.08999 * 109.52982 * 58.59505 * 25 16 15 40 40 H 1.09002 * 109.58844 * 246.15642 * 26 13 11 41 41 H 1.08995 * 109.58731 * 6.44433 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2195 1.0436 0.0000 4 7 3.4677 0.7298 0.0005 5 6 3.5857 -0.6089 0.0004 6 6 2.2689 -1.1119 0.0059 7 7 2.0517 -2.4160 -0.0005 8 6 3.0398 -3.2849 -0.0001 9 6 4.3652 -2.8788 -0.0001 10 6 4.6631 -1.5164 0.0000 11 6 6.0632 -1.0404 -0.0006 12 8 6.4324 -0.2394 -0.8369 13 7 6.9297 -1.4947 0.9263 14 6 6.5205 -2.5219 1.8939 15 6 6.8145 -2.0201 3.3065 16 6 8.2868 -1.6141 3.4052 17 6 8.5862 -1.1479 4.8066 18 1 8.9440 -0.1431 4.9766 19 6 8.4033 -2.0039 5.8718 20 7 7.9670 -3.2273 5.6648 21 14 8.7737 -1.4258 7.6090 22 1 7.9160 -0.2584 7.9356 23 1 8.4976 -2.5268 8.5665 24 1 10.2025 -1.0328 7.7058 25 6 8.5720 -0.4795 2.4185 26 6 8.2997 -0.9679 0.9922 27 1 -0.3633 -0.0004 -1.0276 28 1 -0.3634 -0.8898 0.5142 29 1 -0.3633 0.8902 0.5135 30 1 2.8126 -4.3408 -0.0001 31 1 5.1595 -3.6105 0.0006 32 1 5.4528 -2.7159 1.7913 33 1 7.0799 -3.4394 1.7113 34 1 6.6065 -2.8121 4.0259 35 1 6.1840 -1.1574 3.5220 36 1 8.9165 -2.4708 3.1654 37 1 7.8380 -3.8294 6.4142 38 1 9.6149 -0.1751 2.5058 39 1 7.9254 0.3689 2.6421 40 1 9.0071 -1.7562 0.7346 41 1 8.4063 -0.1385 0.2932 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001645764708.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:50 Heat of formation + Delta-G solvation = 103.007231 kcal Electronic energy + Delta-G solvation = -26357.600746 eV Core-core repulsion = 22661.211641 eV Total energy + Delta-G solvation = -3696.389105 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 4.13 seconds Orbital eigenvalues (eV) -43.48751 -40.16621 -38.75178 -36.88500 -35.19243 -33.69050 -32.68094 -31.04608 -30.94597 -30.09152 -28.19058 -26.64676 -25.38779 -23.94238 -23.37608 -22.46099 -21.78917 -20.00902 -19.15804 -18.58276 -17.64248 -17.25152 -17.08048 -16.34736 -15.85335 -15.34511 -14.99526 -14.61587 -14.57730 -13.96543 -13.69645 -13.39298 -13.24642 -13.13808 -13.08933 -12.71213 -12.67248 -12.41003 -12.27549 -11.76736 -11.66250 -11.35503 -11.16484 -10.93974 -10.69625 -10.43313 -10.26266 -10.07693 -9.69860 -9.48053 -9.34224 -9.22343 -9.08873 -8.87709 -8.40947 -8.10457 -6.06119 -4.11709 0.04164 0.75399 1.72347 2.10813 2.75950 3.12891 3.28712 3.33091 3.36804 3.42113 3.51336 4.06218 4.16924 4.38185 4.39281 4.44146 4.69516 4.82957 4.98695 5.02989 5.23370 5.30965 5.40352 5.51163 5.63662 5.77165 5.88587 5.96442 5.99618 6.10822 6.19448 6.23685 6.39175 6.60673 6.83043 6.98922 7.08283 7.21736 7.32328 7.61345 7.75518 7.88068 7.99496 8.07711 8.34060 8.37295 8.91226 9.53483 10.99543 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.016050 B = 0.003750 C = 0.003535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.152400 B = 7464.387549 C = 7919.272485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.312 5.312 3 N -0.006 5.006 4 N -0.225 5.225 5 C -0.003 4.003 6 C 0.213 3.787 7 N -0.464 5.464 8 C 0.162 3.838 9 C -0.146 4.146 10 C 0.009 3.991 11 C 0.555 3.445 12 O -0.529 6.529 13 N -0.587 5.587 14 C 0.093 3.907 15 C -0.125 4.125 16 C 0.050 3.950 17 C -0.512 4.512 18 H 0.055 0.945 19 C 0.062 3.938 20 N -0.892 5.892 21 Si 0.891 3.109 22 H -0.278 1.278 23 H -0.287 1.287 24 H -0.277 1.277 25 C -0.125 4.125 26 C 0.113 3.887 27 H 0.090 0.910 28 H 0.102 0.898 29 H 0.103 0.897 30 H 0.182 0.818 31 H 0.162 0.838 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.106 0.894 35 H 0.038 0.962 36 H 0.029 0.971 37 H 0.261 0.739 38 H 0.063 0.937 39 H 0.053 0.947 40 H 0.065 0.935 41 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.559 -2.678 -11.246 17.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.114 5.114 3 N 0.013 4.987 4 N -0.099 5.099 5 C -0.132 4.132 6 C -0.029 4.029 7 N -0.178 5.178 8 C -0.010 4.010 9 C -0.170 4.170 10 C -0.008 4.008 11 C 0.341 3.659 12 O -0.406 6.406 13 N -0.319 5.319 14 C -0.029 4.029 15 C -0.164 4.164 16 C 0.031 3.969 17 C -0.550 4.550 18 H 0.073 0.927 19 C -0.139 4.139 20 N -0.532 5.532 21 Si 0.719 3.281 22 H -0.204 1.204 23 H -0.213 1.213 24 H -0.203 1.203 25 C -0.163 4.163 26 C -0.008 4.008 27 H 0.108 0.892 28 H 0.121 0.879 29 H 0.122 0.878 30 H 0.199 0.801 31 H 0.179 0.821 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.124 0.876 35 H 0.056 0.944 36 H 0.047 0.953 37 H 0.071 0.929 38 H 0.082 0.918 39 H 0.072 0.928 40 H 0.084 0.916 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -14.337 -1.048 -11.579 18.458 hybrid contribution 0.669 -0.588 1.157 1.460 sum -13.668 -1.637 -10.421 17.265 Atomic orbital electron populations 1.22262 0.71435 1.06107 1.04998 1.46973 1.09059 1.02008 1.53370 1.78209 0.96965 1.11010 1.12546 1.75443 1.06969 1.10909 1.16599 1.20068 0.93343 0.92304 1.07497 1.19745 0.88315 0.89493 1.05342 1.66257 1.37748 0.98953 1.14848 1.22804 0.86813 0.98893 0.92495 1.22412 0.99312 0.94519 1.00738 1.19594 0.93051 0.92132 0.96006 1.17895 0.84046 0.81679 0.82326 1.90791 1.77864 1.33825 1.38090 1.48179 1.12665 1.40013 1.31041 1.22253 0.99359 0.90084 0.91183 1.21960 0.99929 1.02003 0.92459 1.18628 0.92152 0.92928 0.93185 1.21173 1.43777 0.98824 0.91259 0.92714 1.24942 0.95056 0.94879 0.98996 1.69815 1.46339 1.05767 1.31246 0.86676 0.78904 0.78251 0.84302 1.20355 1.21294 1.20261 1.22031 1.00787 1.00489 0.92992 1.21785 0.80592 0.98952 0.99496 0.89189 0.87929 0.87832 0.80085 0.82068 0.91155 0.91208 0.87557 0.94364 0.95287 0.92930 0.91832 0.92818 0.91648 0.90065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.62 11.41 59.85 0.68 1.30 16 2 N -0.31 -3.97 3.79 -67.23 -0.26 -4.22 16 3 N -0.01 -0.09 13.07 60.35 0.79 0.70 16 4 N -0.22 -4.15 12.42 32.23 0.40 -3.75 16 5 C 0.00 -0.05 7.14 -84.72 -0.61 -0.66 16 6 C 0.21 3.04 8.08 -156.21 -1.26 1.78 16 7 N -0.46 -5.61 10.35 -12.38 -0.13 -5.74 16 8 C 0.16 1.57 11.14 -17.52 -0.20 1.37 16 9 C -0.15 -1.66 7.52 -38.99 -0.29 -1.96 16 10 C 0.01 0.14 4.96 -104.50 -0.52 -0.38 16 11 C 0.55 10.25 7.28 -12.32 -0.09 10.16 16 12 O -0.53 -11.32 16.51 5.32 0.09 -11.24 16 13 N -0.59 -10.49 2.98 -174.12 -0.52 -11.01 16 14 C 0.09 1.58 5.49 -3.93 -0.02 1.56 16 15 C -0.13 -2.71 5.14 -26.83 -0.14 -2.85 16 16 C 0.05 1.15 2.07 -91.73 -0.19 0.96 16 17 C -0.51 -13.53 8.56 -34.44 -0.29 -13.82 16 18 H 0.05 1.45 7.74 -52.48 -0.41 1.05 16 19 C 0.06 1.65 5.30 -17.82 -0.09 1.55 16 20 N -0.89 -23.96 11.30 55.43 0.63 -23.34 16 21 Si 0.89 20.75 29.54 -169.99 -5.02 15.73 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 23 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 25 C -0.12 -2.54 5.30 -26.61 -0.14 -2.68 16 26 C 0.11 2.04 6.43 -3.71 -0.02 2.02 16 27 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.18 0.93 8.06 -52.48 -0.42 0.51 16 31 H 0.16 1.41 7.31 -52.49 -0.38 1.03 16 32 H 0.07 1.05 4.68 -51.93 -0.24 0.81 16 33 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.11 2.54 6.03 -51.93 -0.31 2.23 16 35 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 38 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 39 H 0.05 1.16 8.14 -51.93 -0.42 0.73 16 40 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 41 H 0.08 1.47 7.02 -51.93 -0.36 1.11 16 LS Contribution 339.55 15.07 5.12 5.12 Total: -1.00 -33.59 339.55 -7.16 -40.75 By element: Atomic # 1 Polarization: 3.72 SS G_CDS: -5.07 Total: -1.35 kcal Atomic # 6 Polarization: 1.54 SS G_CDS: -3.18 Total: -1.65 kcal Atomic # 7 Polarization: -48.27 SS G_CDS: 0.91 Total: -47.36 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: 0.09 Total: -11.24 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -33.59 -7.16 -40.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645764708.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.762 kcal (2) G-P(sol) polarization free energy of solvation -33.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.14 seconds