Wall clock time and date at job start Tue Mar 31 2020 11:36:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.28776 * 125.86691 * 2 1 4 4 N 1.28699 * 111.75497 * 179.97438 * 3 2 1 5 5 C 1.34390 * 109.15120 * 0.02562 * 4 3 2 6 6 C 1.37209 * 125.86577 * 179.69579 * 2 1 3 7 7 N 1.32208 * 134.67477 * 0.81016 * 6 2 1 8 8 C 1.31581 * 121.86845 * 179.57112 * 7 6 2 9 9 C 1.38620 * 121.63922 * 359.65354 * 8 7 6 10 10 C 1.39455 * 119.36945 * 0.02567 * 9 8 7 11 11 C 1.47881 * 121.11001 * 180.02562 * 10 9 8 12 12 O 1.21547 * 120.00090 * 127.39435 * 11 10 9 13 13 N 1.34772 * 119.99688 * 307.38782 * 11 10 9 14 14 C 1.46930 * 120.63208 * 3.64136 * 13 11 10 15 15 C 1.52765 * 109.00681 * 233.58046 * 14 13 11 16 16 C 1.53041 * 109.38471 * 305.58490 * 15 14 13 17 17 C 1.50697 * 109.46028 * 181.26045 * 16 15 14 18 18 H 1.08005 * 120.00282 * 239.93450 * 17 16 15 19 19 C 1.37872 * 120.00273 * 59.93306 * 17 16 15 20 20 N 1.31525 * 119.99674 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 120.00460 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47048 * 59.99862 * 21 19 17 23 23 H 1.48498 * 109.47374 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47109 * 300.00184 * 21 19 17 25 25 C 1.53040 * 109.53539 * 61.24296 * 16 15 14 26 26 C 1.46928 * 120.63067 * 183.91579 * 13 11 10 27 27 H 1.08991 * 109.47342 * 90.02150 * 1 2 3 28 28 H 1.09002 * 109.47291 * 210.02320 * 1 2 3 29 29 H 1.09005 * 109.47074 * 330.02033 * 1 2 3 30 30 H 1.08004 * 119.18056 * 179.67517 * 8 7 6 31 31 H 1.07995 * 120.31396 * 179.97438 * 9 8 7 32 32 H 1.09003 * 109.58498 * 353.41462 * 14 13 11 33 33 H 1.08994 * 109.58709 * 113.83962 * 14 13 11 34 34 H 1.08997 * 109.56404 * 185.54666 * 15 14 13 35 35 H 1.09002 * 109.35898 * 65.49757 * 15 14 13 36 36 H 1.08991 * 109.45763 * 301.22094 * 16 15 14 37 37 H 0.96994 * 119.99759 * 180.02562 * 20 19 17 38 38 H 1.08994 * 109.49940 * 178.68395 * 25 16 15 39 39 H 1.08999 * 109.52982 * 58.59505 * 25 16 15 40 40 H 1.09002 * 109.58844 * 246.15642 * 26 13 11 41 41 H 1.08995 * 109.58731 * 6.44433 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2195 1.0436 0.0000 4 7 3.4677 0.7298 0.0005 5 6 3.5857 -0.6089 0.0004 6 6 2.2689 -1.1119 0.0059 7 7 2.0517 -2.4160 -0.0005 8 6 3.0398 -3.2849 -0.0001 9 6 4.3652 -2.8788 -0.0001 10 6 4.6631 -1.5164 0.0000 11 6 6.0632 -1.0404 -0.0006 12 8 6.4324 -0.2394 -0.8369 13 7 6.9297 -1.4947 0.9263 14 6 6.5205 -2.5219 1.8939 15 6 6.8145 -2.0201 3.3065 16 6 8.2868 -1.6141 3.4052 17 6 8.5862 -1.1479 4.8066 18 1 8.9440 -0.1431 4.9766 19 6 8.4033 -2.0039 5.8718 20 7 7.9670 -3.2273 5.6648 21 14 8.7737 -1.4258 7.6090 22 1 7.9160 -0.2584 7.9356 23 1 8.4976 -2.5268 8.5665 24 1 10.2025 -1.0328 7.7058 25 6 8.5720 -0.4795 2.4185 26 6 8.2997 -0.9679 0.9922 27 1 -0.3633 -0.0004 -1.0276 28 1 -0.3634 -0.8898 0.5142 29 1 -0.3633 0.8902 0.5135 30 1 2.8126 -4.3408 -0.0001 31 1 5.1595 -3.6105 0.0006 32 1 5.4528 -2.7159 1.7913 33 1 7.0799 -3.4394 1.7113 34 1 6.6065 -2.8121 4.0259 35 1 6.1840 -1.1574 3.5220 36 1 8.9165 -2.4708 3.1654 37 1 7.8380 -3.8294 6.4142 38 1 9.6149 -0.1751 2.5058 39 1 7.9254 0.3689 2.6421 40 1 9.0071 -1.7562 0.7346 41 1 8.4063 -0.1385 0.2932 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001645764708.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:48 Heat of formation + Delta-G solvation = 80.251833 kcal Electronic energy + Delta-G solvation = -26358.587494 eV Core-core repulsion = 22661.211641 eV Total energy + Delta-G solvation = -3697.375853 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 2.18 seconds Orbital eigenvalues (eV) -44.51950 -41.48176 -39.83998 -38.47777 -36.17121 -35.42132 -33.95487 -32.64724 -31.98610 -31.63063 -28.95146 -28.28679 -26.67210 -24.98110 -24.86411 -23.97765 -23.13227 -21.42054 -20.27463 -19.91842 -18.68325 -18.63975 -18.16802 -18.06449 -17.22858 -16.54853 -16.49936 -16.04955 -15.78281 -14.97315 -14.91432 -14.74458 -14.62325 -14.32116 -14.20599 -14.08819 -13.95308 -13.65565 -13.47681 -13.33953 -13.10480 -12.81785 -12.66049 -12.50018 -12.21183 -12.13487 -11.96955 -11.55313 -11.39653 -11.03734 -10.90600 -10.60356 -10.40974 -10.26821 -10.05105 -9.63492 -8.08058 -6.19868 -0.98487 -0.19438 0.87133 0.98676 1.41882 1.42865 1.43768 1.49999 1.88472 2.41129 2.44358 2.54784 3.07632 3.13289 3.18729 3.33299 3.63367 3.99784 4.10103 4.10678 4.25167 4.26446 4.30949 4.37297 4.44263 4.54445 4.55422 4.59935 4.72061 4.77605 4.84249 4.96155 5.08489 5.16063 5.21849 5.36889 5.40028 5.49862 5.63770 5.99251 6.10683 6.31487 6.40473 6.40801 6.87763 6.93845 6.99847 7.47145 8.95336 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.016050 B = 0.003750 C = 0.003535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.152400 B = 7464.387549 C = 7919.272485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.297 5.297 3 N -0.020 5.020 4 N -0.283 5.283 5 C -0.033 4.033 6 C 0.202 3.798 7 N -0.459 5.459 8 C 0.179 3.821 9 C -0.121 4.121 10 C -0.032 4.032 11 C 0.556 3.444 12 O -0.568 6.568 13 N -0.588 5.588 14 C 0.104 3.896 15 C -0.116 4.116 16 C 0.048 3.952 17 C -0.539 4.539 18 H 0.042 0.958 19 C 0.023 3.977 20 N -0.907 5.907 21 Si 0.944 3.056 22 H -0.281 1.281 23 H -0.279 1.279 24 H -0.274 1.274 25 C -0.116 4.116 26 C 0.118 3.882 27 H 0.112 0.888 28 H 0.120 0.880 29 H 0.121 0.879 30 H 0.240 0.760 31 H 0.194 0.806 32 H 0.097 0.903 33 H 0.093 0.907 34 H 0.087 0.913 35 H 0.012 0.988 36 H 0.016 0.984 37 H 0.263 0.737 38 H 0.068 0.932 39 H 0.031 0.969 40 H 0.088 0.912 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.203 -5.306 -11.587 19.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.100 5.100 3 N -0.001 5.001 4 N -0.156 5.156 5 C -0.163 4.163 6 C -0.039 4.039 7 N -0.173 5.173 8 C 0.006 3.994 9 C -0.144 4.144 10 C -0.048 4.048 11 C 0.344 3.656 12 O -0.448 6.448 13 N -0.320 5.320 14 C -0.017 4.017 15 C -0.155 4.155 16 C 0.029 3.971 17 C -0.577 4.577 18 H 0.061 0.939 19 C -0.177 4.177 20 N -0.546 5.546 21 Si 0.770 3.230 22 H -0.206 1.206 23 H -0.205 1.205 24 H -0.199 1.199 25 C -0.154 4.154 26 C -0.004 4.004 27 H 0.131 0.869 28 H 0.138 0.862 29 H 0.140 0.860 30 H 0.256 0.744 31 H 0.212 0.788 32 H 0.115 0.885 33 H 0.111 0.889 34 H 0.105 0.895 35 H 0.031 0.969 36 H 0.034 0.966 37 H 0.072 0.928 38 H 0.087 0.913 39 H 0.050 0.950 40 H 0.106 0.894 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -16.007 -3.651 -11.914 20.286 hybrid contribution 1.098 0.152 1.277 1.691 sum -14.909 -3.499 -10.637 18.646 Atomic orbital electron populations 1.22801 0.68217 1.07901 1.07051 1.47458 1.10638 1.01103 1.50807 1.78074 0.96711 1.12068 1.13284 1.75342 1.08429 1.12578 1.19295 1.20415 0.95119 0.92099 1.08685 1.19926 0.87527 0.90478 1.05992 1.66467 1.38368 0.97833 1.14613 1.23824 0.85479 1.00817 0.89325 1.22930 1.01295 0.92902 0.97313 1.19564 0.91079 0.94020 1.00108 1.18313 0.85066 0.80750 0.81489 1.90752 1.78831 1.35532 1.39696 1.48204 1.12530 1.40162 1.31054 1.22193 1.01443 0.90140 0.87898 1.21728 0.98223 1.00261 0.95260 1.18594 0.92950 0.93105 0.92410 1.21513 1.44331 0.98550 0.93331 0.93934 1.25543 0.95002 0.95126 1.01997 1.69898 1.46441 1.06202 1.32052 0.85839 0.78639 0.77821 0.80678 1.20639 1.20456 1.19949 1.21885 1.00623 0.98818 0.94090 1.21698 0.81590 0.99678 0.97413 0.86927 0.86191 0.86048 0.74400 0.78848 0.88533 0.88855 0.89520 0.96926 0.96618 0.92790 0.91307 0.94970 0.89399 0.90413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.87 11.41 127.77 1.46 2.33 16 2 N -0.30 -7.28 3.79 -366.60 -1.39 -8.67 16 3 N -0.02 -0.64 13.07 37.02 0.48 -0.15 16 4 N -0.28 -10.93 12.42 -51.93 -0.64 -11.58 16 5 C -0.03 -1.13 7.14 40.06 0.29 -0.84 16 6 C 0.20 5.49 8.08 134.17 1.08 6.57 16 7 N -0.46 -9.50 10.35 -193.09 -2.00 -11.50 16 8 C 0.18 2.57 11.14 84.82 0.94 3.52 16 9 C -0.12 -2.30 7.52 22.65 0.17 -2.13 16 10 C -0.03 -0.98 4.96 -19.79 -0.10 -1.07 16 11 C 0.56 20.57 7.28 86.80 0.63 21.20 16 12 O -0.57 -25.08 16.51 -3.86 -0.06 -25.15 16 13 N -0.59 -20.67 2.98 -823.08 -2.45 -23.12 16 14 C 0.10 3.38 5.49 86.22 0.47 3.85 16 15 C -0.12 -5.06 5.14 30.53 0.16 -4.90 16 16 C 0.05 2.26 2.07 -11.51 -0.02 2.24 16 17 C -0.54 -29.08 8.56 25.60 0.22 -28.86 16 18 H 0.04 2.33 7.74 -2.91 -0.02 2.30 16 19 C 0.02 1.21 5.30 84.65 0.45 1.66 16 20 N -0.91 -48.55 11.30 21.45 0.24 -48.31 16 21 Si 0.94 42.66 29.54 68.60 2.03 44.68 16 22 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 23 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 24 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 25 C -0.12 -4.83 5.30 30.67 0.16 -4.67 16 26 C 0.12 4.24 6.43 86.36 0.55 4.79 16 27 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.12 0.93 8.14 -2.38 -0.02 0.91 16 30 H 0.24 0.68 8.06 -2.91 -0.02 0.65 16 31 H 0.19 2.36 7.31 -2.91 -0.02 2.34 16 32 H 0.10 2.61 4.68 -2.39 -0.01 2.60 16 33 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 34 H 0.09 4.14 6.03 -2.39 -0.01 4.13 16 35 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 36 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.26 13.44 8.31 -92.71 -0.77 12.67 16 38 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 39 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.09 2.77 8.14 -2.39 -0.02 2.75 16 41 H 0.08 2.87 7.02 -2.39 -0.02 2.85 16 Total: -1.00 -77.83 339.55 3.74 -74.10 By element: Atomic # 1 Polarization: 4.95 SS G_CDS: 1.07 Total: 6.01 kcal Atomic # 6 Polarization: -2.78 SS G_CDS: 6.47 Total: 3.69 kcal Atomic # 7 Polarization: -97.57 SS G_CDS: -5.76 Total: -103.33 kcal Atomic # 8 Polarization: -25.08 SS G_CDS: -0.06 Total: -25.15 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.68 kcal Total: -77.83 3.74 -74.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645764708.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.347 kcal (2) G-P(sol) polarization free energy of solvation -77.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.096 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.18 seconds