Wall clock time and date at job start Tue Mar 31 2020 12:09:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86807 * 119.99991 * 2 1 4 4 H 1.48493 * 109.47285 * 239.72886 * 3 2 1 5 5 H 1.48503 * 109.46642 * 359.72238 * 3 2 1 6 6 H 1.48493 * 109.47266 * 119.72460 * 3 2 1 7 7 C 1.38698 * 120.00279 * 179.72586 * 2 1 3 8 8 H 1.07999 * 120.00197 * 180.27442 * 7 2 1 9 9 O 1.34810 * 119.99886 * 0.27323 * 7 2 1 10 10 C 1.35518 * 116.99895 * 174.95572 * 9 7 2 11 11 C 1.38829 * 120.16530 * 5.42899 * 10 9 7 12 12 C 1.38026 * 120.07866 * 179.97438 * 11 10 9 13 13 C 1.38571 * 120.39598 * 0.02562 * 12 11 10 14 14 C 1.37827 * 120.32822 * 0.02562 * 13 12 11 15 15 C 1.39670 * 119.91749 * 359.70358 * 14 13 12 16 16 C 1.47530 * 120.19917 * 180.29737 * 15 14 13 17 17 O 1.21595 * 120.00049 * 239.81123 * 16 15 14 18 18 N 1.34783 * 120.00059 * 59.81050 * 16 15 14 19 19 C 1.46492 * 119.99936 * 116.11631 * 18 16 15 20 20 C 1.53778 * 113.61772 * 43.09066 * 19 18 16 21 21 C 1.53952 * 87.02258 * 220.04701 * 20 19 18 22 22 C 1.53776 * 113.61644 * 305.48110 * 19 18 16 23 23 C 1.46498 * 119.99785 * 296.11120 * 18 16 15 24 24 C 1.53790 * 113.61071 * 70.29103 * 23 18 16 25 25 C 1.53951 * 87.01993 * 220.04641 * 24 23 18 26 26 C 1.53777 * 87.11171 * 25.36252 * 25 24 23 27 27 H 0.97004 * 119.99867 * 179.97438 * 1 2 3 28 28 H 1.07999 * 119.96181 * 359.95394 * 11 10 9 29 29 H 1.07992 * 119.80279 * 180.02562 * 12 11 10 30 30 H 1.08000 * 119.83935 * 179.97438 * 13 12 11 31 31 H 1.08004 * 120.04400 * 180.02562 * 14 13 12 32 32 H 1.09002 * 112.85103 * 174.28768 * 19 18 16 33 33 H 1.08997 * 113.61715 * 334.56463 * 20 19 18 34 34 H 1.09008 * 113.61745 * 105.46978 * 20 19 18 35 35 H 1.09005 * 113.54220 * 270.81173 * 21 20 19 36 36 H 1.09000 * 113.74777 * 139.94123 * 21 20 19 37 37 H 1.08999 * 113.61709 * 254.53414 * 22 19 18 38 38 H 1.08998 * 113.61403 * 25.43344 * 22 19 18 39 39 H 1.08999 * 112.85026 * 201.48333 * 23 18 16 40 40 H 1.08994 * 113.61432 * 334.57081 * 24 23 18 41 41 H 1.09001 * 113.61053 * 105.46856 * 24 23 18 42 42 H 1.09007 * 113.54014 * 270.81540 * 25 24 23 43 43 H 1.08993 * 113.74526 * 139.94200 * 25 24 23 44 44 H 1.08996 * 113.61985 * 220.09046 * 26 25 24 45 45 H 1.08998 * 113.61681 * 89.18587 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1079 1.6936 -1.2091 5 1 1.2841 2.7464 -0.0068 6 1 3.0979 1.6994 1.2158 7 6 2.0087 -1.2011 0.0057 8 1 3.0887 -1.2011 0.0102 9 8 1.3347 -2.3686 0.0058 10 6 2.0692 -3.5030 -0.0946 11 6 3.4560 -3.4399 -0.0783 12 6 4.2024 -4.5965 -0.1802 13 6 3.5761 -5.8269 -0.2998 14 6 2.2004 -5.9086 -0.3189 15 6 1.4320 -4.7473 -0.2110 16 6 -0.0410 -4.8282 -0.2241 17 8 -0.6741 -4.2489 -1.0856 18 7 -0.6851 -5.5443 0.7188 19 6 -1.5815 -4.8732 1.6632 20 6 -2.4913 -3.8210 1.0075 21 6 -2.2384 -2.9459 2.2486 22 6 -0.9178 -3.7139 2.4249 23 6 -0.4886 -6.9939 0.7990 24 6 0.9087 -7.3994 1.2973 25 6 0.8713 -8.5204 0.2427 26 6 -0.1133 -7.6401 -0.5450 27 1 -0.4850 -0.8401 -0.0004 28 1 3.9514 -2.4847 0.0139 29 1 5.2808 -4.5423 -0.1665 30 1 4.1689 -6.7261 -0.3793 31 1 1.7171 -6.8700 -0.4119 32 1 -2.1154 -5.5707 2.3086 33 1 -2.0826 -3.4026 0.0877 34 1 -3.5273 -4.1435 0.9032 35 1 -2.9531 -3.1156 3.0540 36 1 -2.1017 -1.8889 2.0200 37 1 -0.6853 -3.9500 3.4633 38 1 -0.0781 -3.2662 1.8934 39 1 -1.3015 -7.5032 1.3166 40 1 1.6748 -6.6476 1.1084 41 1 0.9169 -7.7648 2.3242 42 1 0.4310 -9.4480 0.6088 43 1 1.8222 -8.6755 -0.2669 44 1 -0.9288 -8.1994 -1.0032 45 1 0.3729 -6.9541 -1.2386 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000298009866.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:09 Heat of formation + Delta-G solvation = 58.147220 kcal Electronic energy + Delta-G solvation = -28297.726598 eV Core-core repulsion = 24670.639809 eV Total energy + Delta-G solvation = -3627.086789 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 1.99 seconds Orbital eigenvalues (eV) -41.11990 -38.83879 -38.47564 -37.07773 -36.32929 -32.75765 -32.33624 -30.65414 -28.99725 -25.72293 -25.23673 -25.12588 -25.11425 -24.60447 -22.64974 -21.85752 -20.53668 -19.12317 -18.65797 -18.25162 -17.38512 -16.54424 -15.89531 -15.47399 -15.44229 -14.97556 -14.65201 -14.18939 -13.97010 -13.83290 -13.57976 -13.30588 -12.87383 -12.77474 -12.73799 -12.69251 -12.13533 -11.85293 -11.73238 -11.54117 -11.29422 -11.19012 -10.91474 -10.82462 -10.61943 -10.55210 -10.42866 -10.32336 -10.10242 -10.04830 -9.83908 -9.61258 -9.15022 -8.82563 -8.17819 -7.79108 -7.40503 -6.81405 -4.11178 1.72721 2.20782 2.80961 3.21355 3.26449 3.42860 3.50048 4.06140 4.39952 4.56801 4.60995 4.77375 4.91243 4.94539 5.03823 5.10210 5.13389 5.19319 5.35389 5.40488 5.45718 5.51625 5.65261 5.68854 5.76931 5.82689 5.87900 5.91739 6.04805 6.09227 6.14286 6.16389 6.24328 6.40575 6.47781 6.53242 6.55114 6.58962 6.62899 6.88590 6.90917 7.01699 7.18833 7.44214 7.48918 7.58587 7.90775 8.34150 8.48573 8.85071 9.51014 10.61907 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.013681 B = 0.006155 C = 0.004640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2046.181287 B = 4547.689143 C = 6033.346102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.015 3.985 3 Si 1.094 2.906 4 H -0.281 1.281 5 H -0.272 1.272 6 H -0.281 1.281 7 C -0.477 4.477 8 H 0.085 0.915 9 O -0.180 6.180 10 C 0.190 3.810 11 C -0.234 4.234 12 C -0.055 4.055 13 C -0.227 4.227 14 C -0.073 4.073 15 C -0.234 4.234 16 C 0.625 3.375 17 O -0.474 6.474 18 N -0.667 5.667 19 C 0.143 3.857 20 C -0.159 4.159 21 C -0.141 4.141 22 C -0.154 4.154 23 C 0.148 3.852 24 C -0.199 4.199 25 C -0.144 4.144 26 C -0.170 4.170 27 H 0.286 0.714 28 H 0.132 0.868 29 H 0.110 0.890 30 H 0.111 0.889 31 H 0.155 0.845 32 H 0.101 0.899 33 H 0.107 0.893 34 H 0.060 0.940 35 H 0.072 0.928 36 H 0.076 0.924 37 H 0.062 0.938 38 H 0.093 0.907 39 H 0.103 0.897 40 H 0.129 0.871 41 H 0.065 0.935 42 H 0.084 0.916 43 H 0.075 0.925 44 H 0.073 0.927 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.016 -13.530 4.229 14.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.192 4.192 3 Si 0.918 3.082 4 H -0.207 1.207 5 H -0.197 1.197 6 H -0.207 1.207 7 C -0.552 4.552 8 H 0.103 0.897 9 O -0.082 6.082 10 C 0.134 3.866 11 C -0.253 4.253 12 C -0.074 4.074 13 C -0.246 4.246 14 C -0.091 4.091 15 C -0.239 4.239 16 C 0.416 3.584 17 O -0.344 6.344 18 N -0.403 5.403 19 C 0.040 3.960 20 C -0.197 4.197 21 C -0.179 4.179 22 C -0.193 4.193 23 C 0.043 3.957 24 C -0.237 4.237 25 C -0.182 4.182 26 C -0.208 4.208 27 H 0.097 0.903 28 H 0.150 0.850 29 H 0.129 0.871 30 H 0.129 0.871 31 H 0.172 0.828 32 H 0.119 0.881 33 H 0.125 0.875 34 H 0.079 0.921 35 H 0.091 0.909 36 H 0.095 0.905 37 H 0.081 0.919 38 H 0.111 0.889 39 H 0.121 0.879 40 H 0.146 0.854 41 H 0.084 0.916 42 H 0.103 0.897 43 H 0.094 0.906 44 H 0.092 0.908 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 0.144 -11.406 3.728 12.001 hybrid contribution 0.515 -1.761 0.185 1.844 sum 0.659 -13.168 3.913 13.753 Atomic orbital electron populations 1.70524 1.06544 1.32140 1.40518 1.26542 0.96815 1.01029 0.94839 0.83132 0.74560 0.73389 0.77109 1.20685 1.19704 1.20701 1.22259 0.93135 0.82020 1.57775 0.89731 1.83632 1.35459 1.12113 1.76986 1.18993 0.89992 0.86214 0.91422 1.21129 0.93253 0.99377 1.11515 1.20907 0.98696 0.92317 0.95468 1.20523 0.94040 0.97176 1.12895 1.21821 0.94291 0.97703 0.95238 1.19195 0.93421 0.92218 1.19102 1.17946 0.86758 0.75179 0.78529 1.90648 1.69639 1.41483 1.32657 1.47014 1.50847 1.05972 1.36506 1.22401 0.90841 0.92332 0.90453 1.23784 0.99346 0.96808 0.99794 1.22684 0.97150 1.00291 0.97782 1.23506 0.98564 0.96895 1.00314 1.22291 0.96823 0.80112 0.96460 1.24761 1.00713 0.99342 0.98910 1.22782 0.99773 0.97433 0.98188 1.23763 0.99949 0.99491 0.97593 0.90316 0.85017 0.87148 0.87121 0.82821 0.88116 0.87507 0.92109 0.90911 0.90529 0.91917 0.88888 0.87897 0.85370 0.91616 0.89727 0.90610 0.90810 0.88815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.65 13.70 55.48 0.76 -24.89 16 2 C 0.02 0.42 5.49 -17.52 -0.10 0.33 16 3 Si 1.09 23.52 29.92 -169.99 -5.09 18.43 16 4 H -0.28 -5.73 7.11 56.52 0.40 -5.32 16 5 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 6 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 7 C -0.48 -13.21 9.49 30.90 0.29 -12.92 16 8 H 0.09 2.19 5.20 -52.49 -0.27 1.92 16 9 O -0.18 -5.00 7.70 0.82 0.01 -4.99 16 10 C 0.19 4.61 6.66 -38.60 -0.26 4.35 16 11 C -0.23 -5.04 9.16 -39.44 -0.36 -5.41 16 12 C -0.06 -0.99 10.03 -39.54 -0.40 -1.38 16 13 C -0.23 -3.76 10.02 -39.61 -0.40 -4.16 16 14 C -0.07 -1.28 5.57 -39.20 -0.22 -1.50 16 15 C -0.23 -5.02 5.42 -104.81 -0.57 -5.58 16 16 C 0.62 13.32 3.10 -12.47 -0.04 13.28 16 17 O -0.47 -11.87 15.28 5.28 0.08 -11.79 16 18 N -0.67 -11.56 2.90 -157.97 -0.46 -12.02 16 19 C 0.14 2.35 4.43 -67.13 -0.30 2.06 16 20 C -0.16 -2.87 7.48 -25.83 -0.19 -3.07 16 21 C -0.14 -2.44 8.09 -25.83 -0.21 -2.65 16 22 C -0.15 -2.80 7.65 -25.92 -0.20 -3.00 16 23 C 0.15 1.98 4.38 -67.12 -0.29 1.69 16 24 C -0.20 -2.50 7.16 -25.82 -0.18 -2.68 16 25 C -0.14 -1.48 7.32 -25.83 -0.19 -1.67 16 26 C -0.17 -2.16 6.91 -25.92 -0.18 -2.34 16 27 H 0.29 8.81 7.97 -40.82 -0.33 8.49 16 28 H 0.13 2.85 5.64 -52.49 -0.30 2.55 16 29 H 0.11 1.62 8.06 -52.49 -0.42 1.19 16 30 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 31 H 0.16 2.28 1.43 -52.48 -0.08 2.20 16 32 H 0.10 1.32 7.97 -51.93 -0.41 0.91 16 33 H 0.11 2.41 5.50 -51.93 -0.29 2.12 16 34 H 0.06 0.96 8.14 -51.92 -0.42 0.54 16 35 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.08 1.52 8.14 -51.93 -0.42 1.09 16 37 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.09 2.12 6.62 -51.93 -0.34 1.78 16 39 H 0.10 1.14 8.01 -51.93 -0.42 0.72 16 40 H 0.13 1.94 3.39 -76.34 -0.26 1.68 16 41 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 42 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.08 0.74 7.53 -51.93 -0.39 0.35 16 44 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.09 1.44 4.99 -51.93 -0.26 1.18 16 LS Contribution 346.52 15.07 5.22 5.22 Total: -1.00 -31.53 346.52 -9.20 -40.73 By element: Atomic # 1 Polarization: 19.90 SS G_CDS: -5.94 Total: 13.96 kcal Atomic # 6 Polarization: -20.87 SS G_CDS: -3.78 Total: -24.65 kcal Atomic # 7 Polarization: -37.21 SS G_CDS: 0.30 Total: -36.91 kcal Atomic # 8 Polarization: -16.87 SS G_CDS: 0.09 Total: -16.78 kcal Atomic # 14 Polarization: 23.52 SS G_CDS: -5.09 Total: 18.43 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.53 -9.20 -40.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298009866.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.877 kcal (2) G-P(sol) polarization free energy of solvation -31.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.730 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.99 seconds