Wall clock time and date at job start Tue Mar 31 2020 12:09:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86807 * 119.99991 * 2 1 4 4 H 1.48493 * 109.47285 * 239.72886 * 3 2 1 5 5 H 1.48503 * 109.46642 * 359.72238 * 3 2 1 6 6 H 1.48493 * 109.47266 * 119.72460 * 3 2 1 7 7 C 1.38698 * 120.00279 * 179.72586 * 2 1 3 8 8 H 1.07999 * 120.00197 * 180.27442 * 7 2 1 9 9 O 1.34810 * 119.99886 * 0.27323 * 7 2 1 10 10 C 1.35518 * 116.99895 * 174.95572 * 9 7 2 11 11 C 1.38829 * 120.16530 * 5.42899 * 10 9 7 12 12 C 1.38026 * 120.07866 * 179.97438 * 11 10 9 13 13 C 1.38571 * 120.39598 * 0.02562 * 12 11 10 14 14 C 1.37827 * 120.32822 * 0.02562 * 13 12 11 15 15 C 1.39670 * 119.91749 * 359.70358 * 14 13 12 16 16 C 1.47530 * 120.19917 * 180.29737 * 15 14 13 17 17 O 1.21595 * 120.00049 * 239.81123 * 16 15 14 18 18 N 1.34783 * 120.00059 * 59.81050 * 16 15 14 19 19 C 1.46492 * 119.99936 * 116.11631 * 18 16 15 20 20 C 1.53778 * 113.61772 * 43.09066 * 19 18 16 21 21 C 1.53952 * 87.02258 * 220.04701 * 20 19 18 22 22 C 1.53776 * 113.61644 * 305.48110 * 19 18 16 23 23 C 1.46498 * 119.99785 * 296.11120 * 18 16 15 24 24 C 1.53790 * 113.61071 * 70.29103 * 23 18 16 25 25 C 1.53951 * 87.01993 * 220.04641 * 24 23 18 26 26 C 1.53777 * 87.11171 * 25.36252 * 25 24 23 27 27 H 0.97004 * 119.99867 * 179.97438 * 1 2 3 28 28 H 1.07999 * 119.96181 * 359.95394 * 11 10 9 29 29 H 1.07992 * 119.80279 * 180.02562 * 12 11 10 30 30 H 1.08000 * 119.83935 * 179.97438 * 13 12 11 31 31 H 1.08004 * 120.04400 * 180.02562 * 14 13 12 32 32 H 1.09002 * 112.85103 * 174.28768 * 19 18 16 33 33 H 1.08997 * 113.61715 * 334.56463 * 20 19 18 34 34 H 1.09008 * 113.61745 * 105.46978 * 20 19 18 35 35 H 1.09005 * 113.54220 * 270.81173 * 21 20 19 36 36 H 1.09000 * 113.74777 * 139.94123 * 21 20 19 37 37 H 1.08999 * 113.61709 * 254.53414 * 22 19 18 38 38 H 1.08998 * 113.61403 * 25.43344 * 22 19 18 39 39 H 1.08999 * 112.85026 * 201.48333 * 23 18 16 40 40 H 1.08994 * 113.61432 * 334.57081 * 24 23 18 41 41 H 1.09001 * 113.61053 * 105.46856 * 24 23 18 42 42 H 1.09007 * 113.54014 * 270.81540 * 25 24 23 43 43 H 1.08993 * 113.74526 * 139.94200 * 25 24 23 44 44 H 1.08996 * 113.61985 * 220.09046 * 26 25 24 45 45 H 1.08998 * 113.61681 * 89.18587 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1079 1.6936 -1.2091 5 1 1.2841 2.7464 -0.0068 6 1 3.0979 1.6994 1.2158 7 6 2.0087 -1.2011 0.0057 8 1 3.0887 -1.2011 0.0102 9 8 1.3347 -2.3686 0.0058 10 6 2.0692 -3.5030 -0.0946 11 6 3.4560 -3.4399 -0.0783 12 6 4.2024 -4.5965 -0.1802 13 6 3.5761 -5.8269 -0.2998 14 6 2.2004 -5.9086 -0.3189 15 6 1.4320 -4.7473 -0.2110 16 6 -0.0410 -4.8282 -0.2241 17 8 -0.6741 -4.2489 -1.0856 18 7 -0.6851 -5.5443 0.7188 19 6 -1.5815 -4.8732 1.6632 20 6 -2.4913 -3.8210 1.0075 21 6 -2.2384 -2.9459 2.2486 22 6 -0.9178 -3.7139 2.4249 23 6 -0.4886 -6.9939 0.7990 24 6 0.9087 -7.3994 1.2973 25 6 0.8713 -8.5204 0.2427 26 6 -0.1133 -7.6401 -0.5450 27 1 -0.4850 -0.8401 -0.0004 28 1 3.9514 -2.4847 0.0139 29 1 5.2808 -4.5423 -0.1665 30 1 4.1689 -6.7261 -0.3793 31 1 1.7171 -6.8700 -0.4119 32 1 -2.1154 -5.5707 2.3086 33 1 -2.0826 -3.4026 0.0877 34 1 -3.5273 -4.1435 0.9032 35 1 -2.9531 -3.1156 3.0540 36 1 -2.1017 -1.8889 2.0200 37 1 -0.6853 -3.9500 3.4633 38 1 -0.0781 -3.2662 1.8934 39 1 -1.3015 -7.5032 1.3166 40 1 1.6748 -6.6476 1.1084 41 1 0.9169 -7.7648 2.3242 42 1 0.4310 -9.4480 0.6088 43 1 1.8222 -8.6755 -0.2669 44 1 -0.9288 -8.1994 -1.0032 45 1 0.3729 -6.9541 -1.2386 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000298009866.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:08 Heat of formation + Delta-G solvation = 38.590396 kcal Electronic energy + Delta-G solvation = -28298.574645 eV Core-core repulsion = 24670.639809 eV Total energy + Delta-G solvation = -3627.934836 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.50883 -40.52752 -39.77896 -38.70233 -37.94747 -34.38269 -34.11341 -32.22370 -30.65015 -27.08826 -26.82148 -26.64189 -26.31300 -25.97526 -24.18727 -23.42112 -21.90223 -20.68346 -20.23588 -19.67418 -18.96842 -18.06356 -17.44795 -17.10264 -16.79626 -16.54844 -15.98640 -15.74725 -15.68026 -15.45382 -15.11303 -14.95524 -14.32672 -14.25889 -14.03509 -13.96551 -13.59293 -13.31152 -13.06262 -12.89323 -12.80241 -12.57839 -12.44352 -12.36561 -12.28900 -11.98575 -11.83586 -11.65075 -11.56893 -11.32895 -11.26942 -11.06256 -10.80267 -10.77442 -9.70912 -9.19224 -9.10571 -8.96453 -6.27277 0.14572 0.60256 1.19651 1.43243 1.56828 1.73606 2.13769 2.30897 2.76423 3.05920 3.23743 3.49602 3.57160 3.65186 3.70498 3.78098 3.86923 3.91868 3.95505 4.03277 4.12170 4.19127 4.42437 4.48997 4.51237 4.64330 4.67195 4.75734 4.77551 4.78886 4.91608 4.94484 4.98908 5.00708 5.08120 5.11832 5.13838 5.17872 5.21943 5.38973 5.42435 5.51828 5.58511 5.63766 5.98278 6.10797 6.21132 6.51618 6.82391 6.90115 7.57174 8.45914 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.013681 B = 0.006155 C = 0.004640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2046.181287 B = 4547.689143 C = 6033.346102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C -0.041 4.041 3 Si 1.144 2.856 4 H -0.262 1.262 5 H -0.274 1.274 6 H -0.256 1.256 7 C -0.493 4.493 8 H 0.093 0.907 9 O -0.229 6.229 10 C 0.150 3.850 11 C -0.256 4.256 12 C -0.047 4.047 13 C -0.203 4.203 14 C -0.063 4.063 15 C -0.250 4.250 16 C 0.629 3.371 17 O -0.530 6.530 18 N -0.667 5.667 19 C 0.157 3.843 20 C -0.167 4.167 21 C -0.132 4.132 22 C -0.159 4.159 23 C 0.132 3.868 24 C -0.200 4.200 25 C -0.123 4.123 26 C -0.180 4.180 27 H 0.258 0.742 28 H 0.121 0.879 29 H 0.153 0.847 30 H 0.164 0.836 31 H 0.188 0.812 32 H 0.155 0.845 33 H 0.051 0.949 34 H 0.087 0.913 35 H 0.119 0.881 36 H 0.032 0.968 37 H 0.088 0.912 38 H 0.034 0.966 39 H 0.141 0.859 40 H 0.099 0.901 41 H 0.087 0.913 42 H 0.119 0.881 43 H 0.087 0.913 44 H 0.089 0.911 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.723 -18.304 5.820 19.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.239 4.239 3 Si 0.959 3.041 4 H -0.186 1.186 5 H -0.199 1.199 6 H -0.181 1.181 7 C -0.568 4.568 8 H 0.110 0.890 9 O -0.135 6.135 10 C 0.098 3.902 11 C -0.275 4.275 12 C -0.065 4.065 13 C -0.221 4.221 14 C -0.080 4.080 15 C -0.256 4.256 16 C 0.422 3.578 17 O -0.404 6.404 18 N -0.403 5.403 19 C 0.053 3.947 20 C -0.205 4.205 21 C -0.170 4.170 22 C -0.198 4.198 23 C 0.030 3.970 24 C -0.238 4.238 25 C -0.160 4.160 26 C -0.218 4.218 27 H 0.067 0.933 28 H 0.139 0.861 29 H 0.171 0.829 30 H 0.182 0.818 31 H 0.204 0.796 32 H 0.173 0.827 33 H 0.069 0.931 34 H 0.106 0.894 35 H 0.137 0.863 36 H 0.051 0.949 37 H 0.107 0.893 38 H 0.053 0.947 39 H 0.158 0.842 40 H 0.116 0.884 41 H 0.106 0.894 42 H 0.137 0.863 43 H 0.106 0.894 44 H 0.108 0.892 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.908 -16.278 5.338 17.236 hybrid contribution 0.112 -0.680 -0.321 0.761 sum 2.020 -16.958 5.017 17.799 Atomic orbital electron populations 1.70663 1.07786 1.30065 1.45426 1.28397 0.96842 1.04869 0.93747 0.82617 0.73802 0.68842 0.78802 1.18623 1.19914 1.18084 1.22623 0.93661 0.82905 1.57626 0.88978 1.83653 1.36496 1.12881 1.80438 1.19697 0.91527 0.86357 0.92625 1.21277 0.92478 1.00817 1.12972 1.21394 1.00676 0.91245 0.93190 1.21203 0.93822 0.98540 1.08517 1.22343 0.94953 0.97567 0.93154 1.19623 0.94249 0.92655 1.19030 1.18154 0.86972 0.74181 0.78488 1.90633 1.70528 1.43880 1.35400 1.47091 1.50290 1.07638 1.35249 1.22573 0.89747 0.92441 0.89894 1.23667 1.01022 0.98061 0.97779 1.22703 0.97884 0.97574 0.98847 1.23406 0.97018 0.98139 1.01269 1.22905 0.98952 0.77432 0.97707 1.24608 0.98738 0.99418 1.01038 1.22793 0.99648 0.97491 0.96051 1.23780 1.01349 0.99703 0.96975 0.93317 0.86126 0.82908 0.81832 0.79610 0.82716 0.93051 0.89413 0.86318 0.94853 0.89302 0.94685 0.84176 0.88362 0.89428 0.86311 0.89444 0.89217 0.92164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -59.30 13.70 21.62 0.30 -59.00 16 2 C -0.04 -2.45 5.49 84.85 0.47 -1.98 16 3 Si 1.14 50.00 29.92 68.60 2.05 52.05 16 4 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 5 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 6 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 7 C -0.49 -29.81 9.49 67.93 0.64 -29.17 16 8 H 0.09 5.16 5.20 -2.91 -0.02 5.14 16 9 O -0.23 -14.13 7.70 -19.99 -0.15 -14.29 16 10 C 0.15 7.80 6.66 22.91 0.15 7.95 16 11 C -0.26 -11.39 9.16 22.36 0.20 -11.19 16 12 C -0.05 -1.55 10.03 22.30 0.22 -1.33 16 13 C -0.20 -5.86 10.02 22.25 0.22 -5.64 16 14 C -0.06 -2.09 5.57 22.52 0.13 -1.97 16 15 C -0.25 -11.15 5.42 -19.99 -0.11 -11.26 16 16 C 0.63 28.41 3.10 86.69 0.27 28.68 16 17 O -0.53 -29.22 15.28 -4.01 -0.06 -29.28 16 18 N -0.67 -22.94 2.90 -771.94 -2.24 -25.18 16 19 C 0.16 5.03 4.43 45.52 0.20 5.24 16 20 C -0.17 -6.35 7.48 31.18 0.23 -6.12 16 21 C -0.13 -4.83 8.09 31.18 0.25 -4.58 16 22 C -0.16 -6.07 7.65 31.12 0.24 -5.83 16 23 C 0.13 3.09 4.38 45.52 0.20 3.29 16 24 C -0.20 -4.11 7.16 31.18 0.22 -3.89 16 25 C -0.12 -1.82 7.32 31.18 0.23 -1.59 16 26 C -0.18 -3.98 6.91 31.12 0.21 -3.77 16 27 H 0.26 18.09 7.97 -92.71 -0.74 17.35 16 28 H 0.12 5.50 5.64 -2.91 -0.02 5.48 16 29 H 0.15 3.77 8.06 -2.91 -0.02 3.74 16 30 H 0.16 3.16 8.06 -2.91 -0.02 3.13 16 31 H 0.19 4.91 1.43 -2.91 0.00 4.90 16 32 H 0.16 3.36 7.97 -2.39 -0.02 3.34 16 33 H 0.05 2.59 5.50 -2.39 -0.01 2.58 16 34 H 0.09 2.77 8.14 -2.38 -0.02 2.76 16 35 H 0.12 3.21 8.14 -2.38 -0.02 3.19 16 36 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.09 2.82 8.14 -2.39 -0.02 2.80 16 38 H 0.03 1.76 6.62 -2.39 -0.02 1.74 16 39 H 0.14 2.29 8.01 -2.39 -0.02 2.27 16 40 H 0.10 2.65 3.39 -25.32 -0.09 2.57 16 41 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.12 1.09 8.14 -2.38 -0.02 1.07 16 43 H 0.09 1.16 7.53 -2.39 -0.02 1.14 16 44 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 45 H 0.06 1.77 4.99 -2.39 -0.01 1.76 16 Total: -1.00 -84.45 346.52 4.87 -79.58 By element: Atomic # 1 Polarization: 38.28 SS G_CDS: 0.98 Total: 39.26 kcal Atomic # 6 Polarization: -47.14 SS G_CDS: 3.99 Total: -43.15 kcal Atomic # 7 Polarization: -82.24 SS G_CDS: -1.94 Total: -84.18 kcal Atomic # 8 Polarization: -43.35 SS G_CDS: -0.22 Total: -43.57 kcal Atomic # 14 Polarization: 50.00 SS G_CDS: 2.05 Total: 52.05 kcal Total: -84.45 4.87 -79.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298009866.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.168 kcal (2) G-P(sol) polarization free energy of solvation -84.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.578 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds