Wall clock time and date at job start Tue Mar 31 2020 11:35:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 120.00080 * 2 1 4 4 H 1.48494 * 109.47148 * 270.00182 * 3 2 1 5 5 H 1.48501 * 109.47028 * 30.00040 * 3 2 1 6 6 H 1.48501 * 109.47235 * 149.99895 * 3 2 1 7 7 C 1.37877 * 120.00167 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00123 * 184.87277 * 7 2 1 9 9 C 1.50700 * 119.99758 * 4.86566 * 7 2 1 10 10 H 1.09000 * 109.46801 * 174.68290 * 9 7 2 11 11 C 1.52999 * 109.47030 * 54.68304 * 9 7 2 12 12 C 1.50698 * 109.47064 * 64.99807 * 11 9 7 13 13 O 1.21284 * 120.00316 * 0.02562 * 12 11 9 14 14 N 1.34778 * 120.00007 * 179.97438 * 12 11 9 15 15 C 1.46500 * 119.99902 * 179.97438 * 14 12 11 16 16 H 1.08991 * 110.35104 * 324.17268 * 15 14 12 17 17 C 1.51102 * 110.38208 * 86.46199 * 15 14 12 18 18 C 1.30528 * 111.10348 * 135.60334 * 17 15 14 19 19 C 1.51100 * 111.10528 * 359.61483 * 18 17 15 20 20 H 1.08999 * 110.19726 * 102.67936 * 19 18 17 21 21 C 1.53003 * 110.61998 * 224.97037 * 19 18 17 22 22 O 1.42897 * 109.47124 * 290.50555 * 21 19 18 23 23 C 1.54631 * 104.77883 * 343.92980 * 19 18 17 24 24 C 1.50700 * 109.47366 * 294.68198 * 9 7 2 25 25 C 1.38234 * 119.99791 * 271.48446 * 24 9 7 26 26 C 1.38241 * 119.99555 * 179.78752 * 25 24 9 27 27 C 1.38232 * 120.00269 * 0.44256 * 26 25 24 28 28 C 1.38240 * 120.00010 * 359.81232 * 27 26 25 29 29 C 1.38235 * 119.99891 * 91.75879 * 24 9 7 30 30 H 0.97002 * 120.00287 * 359.97438 * 1 2 3 31 31 H 1.08996 * 109.47195 * 304.99448 * 11 9 7 32 32 H 1.09003 * 109.47324 * 184.99935 * 11 9 7 33 33 H 0.96998 * 119.99911 * 0.02562 * 14 12 11 34 34 H 1.08004 * 124.45142 * 315.34077 * 17 15 14 35 35 H 1.08007 * 124.44803 * 179.73753 * 18 17 15 36 36 H 1.08996 * 109.47248 * 50.51047 * 21 19 18 37 37 H 1.09001 * 109.46786 * 170.50798 * 21 19 18 38 38 H 0.96703 * 113.99693 * 179.97438 * 22 21 19 39 39 H 1.09001 * 111.03922 * 266.40543 * 23 19 18 40 40 H 1.09001 * 111.03548 * 142.46892 * 23 19 18 41 41 H 1.07998 * 120.00489 * 359.97438 * 25 24 9 42 42 H 1.08002 * 119.99771 * 180.27469 * 26 25 24 43 43 H 1.08002 * 120.00210 * 179.83147 * 27 26 25 44 44 H 1.07997 * 120.00286 * 180.02562 * 28 27 26 45 45 H 1.07997 * 120.00086 * 359.97438 * 29 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0816 -1.1957 0.0789 9 6 1.2551 -2.4967 -0.1118 10 1 1.9660 -3.3192 -0.1904 11 6 0.3671 -2.4694 -1.3574 12 6 1.2320 -2.4005 -2.5895 13 8 2.4398 -2.3761 -2.4821 14 7 0.6634 -2.3669 -3.8110 15 6 1.5042 -2.2993 -5.0088 16 1 2.3851 -1.6861 -4.8194 17 6 1.9128 -3.6875 -5.4439 18 6 1.7905 -3.8301 -6.7356 19 6 1.2711 -2.5640 -7.3761 20 1 2.0856 -2.0261 -7.8612 21 6 0.1687 -2.8848 -8.3875 22 8 0.7376 -3.5499 -9.5171 23 6 0.7007 -1.7338 -6.2029 24 6 0.3975 -2.6891 1.1124 25 6 0.9177 -3.3165 2.2289 26 6 0.1324 -3.4890 3.3535 27 6 -1.1758 -3.0425 3.3581 28 6 -1.6976 -2.4198 2.2396 29 6 -0.9109 -2.2433 1.1166 30 1 -0.4851 0.8400 0.0004 31 1 -0.2834 -1.5956 -1.3208 32 1 -0.2408 -3.3736 -1.3903 33 1 -0.3026 -2.3867 -3.8970 34 1 2.2643 -4.4589 -4.7747 35 1 2.0275 -4.7351 -7.2755 36 1 -0.5748 -3.5314 -7.9216 37 1 -0.3069 -1.9594 -8.7122 38 1 0.0946 -3.7844 -10.2003 39 1 -0.3667 -1.9155 -6.0775 40 1 0.9015 -0.6714 -6.3414 41 1 1.9385 -3.6691 2.2239 42 1 0.5401 -3.9752 4.2274 43 1 -1.7902 -3.1797 4.2357 44 1 -2.7195 -2.0705 2.2434 45 1 -1.3185 -1.7568 0.2429 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356384607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:35:04 Heat of formation + Delta-G solvation = -42.621506 kcal Electronic energy + Delta-G solvation = -26007.782797 eV Core-core repulsion = 22376.326348 eV Total energy + Delta-G solvation = -3631.456449 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -39.73623 -38.54246 -37.78903 -36.45639 -34.23395 -33.12761 -31.06113 -29.97066 -29.80951 -28.79760 -27.65824 -25.72373 -23.80463 -22.51757 -21.43210 -20.70367 -20.20884 -19.20205 -18.54690 -17.52521 -16.76028 -16.13012 -16.07085 -15.71550 -15.28435 -14.93981 -14.51434 -14.06626 -13.99581 -13.83338 -13.52678 -13.03633 -12.73694 -12.56380 -12.21625 -11.95910 -11.80572 -11.71613 -11.56081 -11.47171 -11.34589 -11.27175 -11.22330 -10.88978 -10.77565 -10.39642 -10.17777 -10.15145 -9.92631 -9.28270 -9.19483 -9.04662 -8.69827 -8.49260 -8.34083 -7.79166 -7.42698 -5.96258 -4.05743 2.29466 2.50988 2.59713 3.31985 3.37573 3.43595 3.68895 3.82355 4.15597 4.44654 4.51719 4.59336 4.96250 4.98879 5.10232 5.21137 5.26322 5.27926 5.41711 5.55049 5.78563 5.80410 5.82456 5.90757 5.97218 6.02872 6.10908 6.24479 6.39070 6.47687 6.54804 6.60326 6.73059 6.79272 6.83883 7.13281 7.15685 7.18281 7.27915 7.37114 7.49284 7.55818 7.70770 7.94821 8.09866 8.19512 8.28484 8.37170 8.91185 9.24534 9.57365 10.97806 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.015674 B = 0.003392 C = 0.003056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1785.936354 B = 8252.576941 C = 9159.863855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.060 3.940 3 Si 0.891 3.109 4 H -0.283 1.283 5 H -0.288 1.288 6 H -0.275 1.275 7 C -0.469 4.469 8 H 0.059 0.941 9 C 0.088 3.912 10 H 0.037 0.963 11 C -0.139 4.139 12 C 0.524 3.476 13 O -0.526 6.526 14 N -0.741 5.741 15 C 0.167 3.833 16 H 0.097 0.903 17 C -0.157 4.157 18 C -0.162 4.162 19 C -0.065 4.065 20 H 0.089 0.911 21 C 0.085 3.915 22 O -0.573 6.573 23 C -0.122 4.122 24 C -0.027 4.027 25 C -0.132 4.132 26 C -0.142 4.142 27 C -0.154 4.154 28 C -0.143 4.143 29 C -0.068 4.068 30 H 0.260 0.740 31 H 0.132 0.868 32 H 0.052 0.948 33 H 0.393 0.607 34 H 0.124 0.876 35 H 0.125 0.875 36 H 0.048 0.952 37 H 0.046 0.954 38 H 0.377 0.623 39 H 0.079 0.921 40 H 0.082 0.918 41 H 0.105 0.895 42 H 0.101 0.899 43 H 0.099 0.901 44 H 0.101 0.899 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.603 -5.636 -11.989 14.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.140 4.140 3 Si 0.720 3.280 4 H -0.209 1.209 5 H -0.215 1.215 6 H -0.200 1.200 7 C -0.506 4.506 8 H 0.077 0.923 9 C 0.069 3.931 10 H 0.055 0.945 11 C -0.179 4.179 12 C 0.312 3.688 13 O -0.400 6.400 14 N -0.395 5.395 15 C 0.062 3.938 16 H 0.115 0.885 17 C -0.176 4.176 18 C -0.181 4.181 19 C -0.084 4.084 20 H 0.107 0.893 21 C 0.008 3.992 22 O -0.378 6.378 23 C -0.160 4.160 24 C -0.028 4.028 25 C -0.150 4.150 26 C -0.160 4.160 27 C -0.173 4.173 28 C -0.162 4.162 29 C -0.087 4.087 30 H 0.070 0.930 31 H 0.149 0.851 32 H 0.070 0.930 33 H 0.227 0.773 34 H 0.142 0.858 35 H 0.142 0.858 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.223 0.777 39 H 0.097 0.903 40 H 0.100 0.900 41 H 0.123 0.877 42 H 0.119 0.881 43 H 0.117 0.883 44 H 0.119 0.881 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -4.280 -5.361 -11.512 13.401 hybrid contribution -0.506 1.046 -0.192 1.178 sum -4.786 -4.315 -11.703 13.360 Atomic orbital electron populations 1.69677 1.05558 1.26059 1.51695 1.24874 0.94906 0.98906 0.95274 0.86582 0.80030 0.83477 0.77923 1.20926 1.21451 1.20013 1.20990 0.93203 0.89428 1.46992 0.92306 1.17624 0.91729 0.96915 0.86808 0.94491 1.21929 0.99819 1.03424 0.92702 1.21173 0.89556 0.73923 0.84106 1.90612 1.15241 1.47780 1.86393 1.46256 1.09342 1.78471 1.05388 1.20618 0.94642 0.93918 0.84660 0.88546 1.23742 0.99256 0.98282 0.96336 1.23071 1.01720 0.98026 0.95288 1.20963 0.97593 0.95242 0.94598 0.89291 1.22223 0.95069 0.95456 0.86483 1.86496 1.39287 1.80267 1.31785 1.22769 1.00229 0.99924 0.93105 1.20350 0.93564 0.92007 0.96849 1.20902 0.98899 1.01420 0.93797 1.20798 0.94723 1.02717 0.97743 1.20764 0.95803 1.02702 0.97996 1.21048 0.99206 1.01204 0.94714 1.21360 0.93543 0.95097 0.98689 0.92998 0.85100 0.92972 0.77311 0.85783 0.85753 0.93387 0.93583 0.77671 0.90266 0.89959 0.87672 0.88111 0.88319 0.88106 0.84277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.54 7.99 55.43 0.44 -22.10 16 2 C 0.06 1.57 5.12 -17.82 -0.09 1.48 16 3 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 4 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.47 -12.57 7.27 -34.44 -0.25 -12.82 16 8 H 0.06 1.67 7.82 -52.49 -0.41 1.26 16 9 C 0.09 2.12 1.97 -92.92 -0.18 1.94 16 10 H 0.04 0.91 7.91 -51.93 -0.41 0.50 16 11 C -0.14 -2.93 4.07 -27.88 -0.11 -3.05 16 12 C 0.52 10.92 7.56 -10.99 -0.08 10.83 16 13 O -0.53 -12.94 14.69 5.55 0.08 -12.86 16 14 N -0.74 -11.95 5.15 -53.90 -0.28 -12.23 16 15 C 0.17 2.45 3.19 -68.02 -0.22 2.23 16 16 H 0.10 1.66 7.65 -51.93 -0.40 1.27 16 17 C -0.16 -2.19 10.39 -35.70 -0.37 -2.56 16 18 C -0.16 -1.96 9.99 -35.70 -0.36 -2.31 16 19 C -0.07 -0.70 3.16 -90.72 -0.29 -0.98 16 20 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 21 C 0.09 0.74 6.37 37.16 0.24 0.98 16 22 O -0.57 -5.22 13.55 -35.23 -0.48 -5.70 16 23 C -0.12 -1.34 6.39 -25.01 -0.16 -1.50 16 24 C -0.03 -0.62 4.69 -104.62 -0.49 -1.11 16 25 C -0.13 -2.83 9.71 -39.58 -0.38 -3.22 16 26 C -0.14 -2.74 10.05 -39.58 -0.40 -3.14 16 27 C -0.15 -2.91 10.05 -39.58 -0.40 -3.31 16 28 C -0.14 -2.84 10.05 -39.58 -0.40 -3.24 16 29 C -0.07 -1.50 7.45 -39.58 -0.30 -1.79 16 30 H 0.26 6.45 8.31 -40.82 -0.34 6.11 16 31 H 0.13 2.93 4.70 -51.93 -0.24 2.68 16 32 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.39 5.27 8.39 -40.82 -0.34 4.92 16 34 H 0.12 1.85 8.06 -52.48 -0.42 1.43 16 35 H 0.12 1.42 8.06 -52.48 -0.42 1.00 16 36 H 0.05 0.39 8.13 -51.93 -0.42 -0.03 16 37 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 38 H 0.38 1.66 9.12 45.56 0.42 2.07 16 39 H 0.08 0.76 7.58 -51.93 -0.39 0.36 16 40 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.11 2.15 8.06 -52.49 -0.42 1.72 16 42 H 0.10 1.67 8.06 -52.49 -0.42 1.24 16 43 H 0.10 1.58 8.06 -52.49 -0.42 1.16 16 44 H 0.10 1.76 8.06 -52.49 -0.42 1.34 16 45 H 0.14 3.09 5.18 -52.49 -0.27 2.82 16 LS Contribution 365.43 15.07 5.51 5.51 Total: -1.00 -30.65 365.43 -9.82 -40.47 By element: Atomic # 1 Polarization: 17.83 SS G_CDS: -5.84 Total: 11.99 kcal Atomic # 6 Polarization: -17.33 SS G_CDS: -4.24 Total: -21.57 kcal Atomic # 7 Polarization: -34.49 SS G_CDS: 0.17 Total: -34.33 kcal Atomic # 8 Polarization: -18.16 SS G_CDS: -0.40 Total: -18.56 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -30.65 -9.82 -40.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356384607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.152 kcal (2) G-P(sol) polarization free energy of solvation -30.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds