Wall clock time and date at job start Tue Mar 31 2020 12:30:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34515 * 125.78960 * 2 1 4 4 C 1.41382 * 106.83918 * 180.11909 * 3 2 1 5 5 C 1.50704 * 126.57699 * 179.83582 * 4 3 2 6 6 H 1.09002 * 109.46621 * 144.68679 * 5 4 3 7 7 C 1.53005 * 109.46805 * 264.68168 * 5 4 3 8 8 N 1.46896 * 109.47451 * 24.68344 * 5 4 3 9 9 C 1.46905 * 111.00155 * 154.99865 * 8 5 4 10 10 C 1.50698 * 109.47044 * 180.02562 * 9 8 5 11 11 C 1.38297 * 119.93202 * 90.00061 * 10 9 8 12 12 C 1.38101 * 120.07230 * 180.02562 * 11 10 9 13 13 C 1.38886 * 119.92536 * 359.97438 * 12 11 10 14 14 O 1.35750 * 120.06440 * 180.02562 * 13 12 11 15 15 C 1.34828 * 117.00075 * 5.53777 * 14 13 12 16 16 H 1.07993 * 120.00518 * 354.94289 * 15 14 13 17 17 C 1.38663 * 119.99751 * 174.94575 * 15 14 13 18 18 N 1.31556 * 120.00220 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 119.99821 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47448 * 89.99502 * 19 17 15 21 21 H 1.48501 * 109.47175 * 209.99712 * 19 17 15 22 22 H 1.48506 * 109.47415 * 329.99678 * 19 17 15 23 23 C 1.38874 * 119.86623 * 0.27854 * 13 12 11 24 24 C 1.38110 * 119.92772 * 359.48927 * 23 13 12 25 25 C 1.34514 * 106.84473 * 359.57087 * 4 3 2 26 26 C 1.50691 * 125.79311 * 180.23161 * 25 4 3 27 27 O 1.34299 * 125.79178 * 179.63408 * 2 1 3 28 28 H 1.08998 * 109.47185 * 180.34047 * 1 2 3 29 29 H 1.09000 * 109.47048 * 300.34747 * 1 2 3 30 30 H 1.09003 * 109.46731 * 60.34052 * 1 2 3 31 31 H 1.07998 * 126.58242 * 359.95081 * 3 2 1 32 32 H 1.09001 * 109.46864 * 180.02562 * 7 5 4 33 33 H 1.08997 * 109.47390 * 300.00142 * 7 5 4 34 34 H 1.08995 * 109.46882 * 60.00503 * 7 5 4 35 35 H 1.00902 * 110.99547 * 31.04453 * 8 5 4 36 36 H 1.09003 * 109.46647 * 59.99968 * 9 8 5 37 37 H 1.09004 * 109.46926 * 300.00194 * 9 8 5 38 38 H 1.07999 * 119.96698 * 0.02562 * 11 10 9 39 39 H 1.07992 * 120.03608 * 179.97438 * 12 11 10 40 40 H 0.96996 * 120.00178 * 179.97438 * 18 17 15 41 41 H 1.07996 * 120.03745 * 179.72497 * 23 13 12 42 42 H 1.07996 * 119.96227 * 180.23396 * 24 23 13 43 43 H 1.08998 * 109.47814 * 89.99768 * 26 25 4 44 44 H 1.09005 * 109.47223 * 210.00127 * 26 25 4 45 45 H 1.09001 * 109.47085 * 329.99688 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0911 0.0000 4 6 3.6309 0.6320 -0.0028 5 6 4.8733 1.4850 -0.0073 6 1 5.6489 1.0002 0.5854 7 6 5.3656 1.6613 -1.4453 8 7 4.5662 2.8005 0.5698 9 6 5.7733 3.4258 1.1267 10 6 5.4197 4.7700 1.7089 11 6 5.0370 4.8690 3.0342 12 6 4.7118 6.0993 3.5705 13 6 4.7699 7.2381 2.7776 14 8 4.4513 8.4490 3.3021 15 6 4.1981 8.4953 4.6255 16 1 4.1731 7.5830 5.2029 17 6 3.9697 9.7145 5.2454 18 7 4.0006 10.8260 4.5422 19 14 3.6196 9.7789 7.0791 20 1 4.8973 9.9217 7.8224 21 1 2.7423 10.9398 7.3751 22 1 2.9410 8.5261 7.4978 23 6 5.1495 7.1347 1.4457 24 6 5.4781 5.9021 0.9165 25 6 3.5815 -0.7122 0.0053 26 6 4.7706 -1.6378 0.0108 27 8 2.2925 -1.0893 0.0070 28 1 -0.3633 -1.0276 0.0061 29 1 -0.3633 0.5192 0.8869 30 1 -0.3633 0.5086 -0.8931 31 1 1.9666 2.1204 -0.0007 32 1 6.2644 2.2778 -1.4485 33 1 5.5934 0.6852 -1.8735 34 1 4.5899 2.1460 -2.0380 35 1 3.8413 2.7287 1.2680 36 1 6.5131 3.5548 0.3365 37 1 6.1848 2.7882 1.9092 38 1 4.9924 3.9832 3.6504 39 1 4.4127 6.1758 4.6054 40 1 3.8405 11.6788 4.9757 41 1 5.1913 8.0178 0.8254 42 1 5.7770 5.8217 -0.1181 43 1 5.0575 -1.8548 1.0397 44 1 4.5106 -2.5664 -0.4975 45 1 5.6039 -1.1618 -0.5061 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044729769.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:20 Heat of formation + Delta-G solvation = 1.535378 kcal Electronic energy + Delta-G solvation = -25018.654861 eV Core-core repulsion = 21389.113198 eV Total energy + Delta-G solvation = -3629.541663 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.76965 -39.07166 -37.52513 -36.22564 -33.30740 -33.12795 -32.24078 -30.62579 -30.11841 -29.65346 -28.42979 -25.62531 -25.04300 -24.22935 -22.59898 -21.92312 -20.90982 -20.32914 -19.28433 -17.95870 -17.04046 -16.62195 -16.47875 -15.47564 -15.18460 -14.79505 -14.52638 -14.18426 -14.12500 -13.70030 -13.63731 -13.58226 -13.47915 -13.33154 -12.98766 -12.90420 -12.67328 -12.57657 -12.48624 -12.36399 -11.97701 -11.94799 -11.74287 -11.60750 -11.22833 -11.02336 -10.74065 -10.61176 -10.54215 -10.40849 -9.67000 -9.31782 -8.82554 -8.37993 -8.25698 -8.13605 -7.15831 -6.44016 -4.02777 1.55793 2.25592 2.30999 2.46815 2.76180 3.13022 3.13955 3.18600 3.97444 4.19657 4.46414 4.61343 4.68159 4.84058 4.94884 5.11100 5.15141 5.17728 5.20817 5.24400 5.27834 5.33378 5.35570 5.39637 5.52007 5.52776 5.60622 5.66923 5.77361 5.82485 5.91513 5.91991 6.02233 6.09490 6.21323 6.25137 6.45891 6.46045 6.73942 6.93086 7.02184 7.07347 7.17840 7.30113 7.39057 7.46007 7.54295 7.86056 8.01234 9.01713 9.72572 10.74130 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.018093 B = 0.002434 C = 0.002286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.207033 B =11499.905691 C =12243.913838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.024 4.024 3 C -0.188 4.188 4 C -0.171 4.171 5 C 0.154 3.846 6 H 0.047 0.953 7 C -0.134 4.134 8 N -0.676 5.676 9 C 0.118 3.882 10 C -0.183 4.183 11 C -0.066 4.066 12 C -0.235 4.235 13 C 0.156 3.844 14 O -0.178 6.178 15 C -0.391 4.391 16 H 0.091 0.909 17 C 0.039 3.961 18 N -0.863 5.863 19 Si 0.941 3.059 20 H -0.273 1.273 21 H -0.277 1.277 22 H -0.268 1.268 23 C -0.195 4.195 24 C -0.051 4.051 25 C -0.020 4.020 26 C -0.072 4.072 27 O -0.177 6.177 28 H 0.072 0.928 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.153 0.847 32 H 0.057 0.943 33 H 0.051 0.949 34 H 0.063 0.937 35 H 0.344 0.656 36 H 0.071 0.929 37 H 0.026 0.974 38 H 0.102 0.898 39 H 0.125 0.875 40 H 0.270 0.730 41 H 0.116 0.884 42 H 0.111 0.889 43 H 0.078 0.922 44 H 0.074 0.926 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.705 -22.903 -8.862 24.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.074 4.074 3 C -0.207 4.207 4 C -0.173 4.173 5 C 0.044 3.956 6 H 0.064 0.936 7 C -0.192 4.192 8 N -0.308 5.308 9 C -0.010 4.010 10 C -0.185 4.185 11 C -0.085 4.085 12 C -0.254 4.254 13 C 0.102 3.898 14 O -0.082 6.082 15 C -0.468 4.468 16 H 0.109 0.891 17 C -0.165 4.165 18 N -0.498 5.498 19 Si 0.765 3.235 20 H -0.199 1.199 21 H -0.203 1.203 22 H -0.192 1.192 23 C -0.214 4.214 24 C -0.070 4.070 25 C -0.070 4.070 26 C -0.129 4.129 27 O -0.074 6.074 28 H 0.091 0.909 29 H 0.103 0.897 30 H 0.103 0.897 31 H 0.171 0.829 32 H 0.076 0.924 33 H 0.070 0.930 34 H 0.082 0.918 35 H 0.164 0.836 36 H 0.089 0.911 37 H 0.045 0.955 38 H 0.120 0.880 39 H 0.143 0.857 40 H 0.080 0.920 41 H 0.134 0.866 42 H 0.129 0.871 43 H 0.097 0.903 44 H 0.093 0.907 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -0.813 -22.386 -9.516 24.338 hybrid contribution -0.085 -0.273 1.810 1.832 sum -0.897 -22.658 -7.706 23.950 Atomic orbital electron populations 1.20280 0.85172 1.03635 1.03712 1.22380 0.93903 0.84065 1.07022 1.21446 0.91758 0.99755 1.07766 1.20253 0.95771 0.92784 1.08487 1.19812 0.91560 0.87782 0.96434 0.93559 1.21758 1.01350 1.00827 0.95218 1.60647 1.10479 1.20281 1.39442 1.20675 0.91478 0.92280 0.96601 1.19101 1.11202 0.93895 0.94265 1.20586 0.97350 0.96280 0.94237 1.21111 1.10634 0.92397 1.01247 1.19405 0.91552 0.86245 0.92582 1.83979 1.74454 1.24571 1.25166 1.21319 1.49701 0.94700 0.81065 0.89122 1.25286 0.96806 0.94138 1.00303 1.70037 1.45565 0.97949 1.36250 0.85720 0.78630 0.78432 0.80688 1.19897 1.20256 1.19225 1.20225 1.09366 0.97888 0.93920 1.20461 0.97323 0.91264 0.97962 1.22085 0.83338 0.94083 1.07511 1.20289 0.91545 0.97680 1.03355 1.83932 1.16184 1.35146 1.72180 0.90913 0.89654 0.89736 0.82933 0.92358 0.93034 0.91815 0.83647 0.91078 0.95543 0.88017 0.85694 0.92036 0.86592 0.87061 0.90309 0.90702 0.89419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.53 10.42 36.01 0.38 -0.15 16 2 C -0.02 -0.27 7.32 -35.62 -0.26 -0.53 16 3 C -0.19 -2.23 9.77 -39.70 -0.39 -2.62 16 4 C -0.17 -1.99 5.09 -104.74 -0.53 -2.52 16 5 C 0.15 1.71 2.62 -68.86 -0.18 1.53 16 6 H 0.05 0.49 7.68 -51.93 -0.40 0.09 16 7 C -0.13 -1.37 9.40 37.16 0.35 -1.02 16 8 N -0.68 -8.80 6.07 -109.21 -0.66 -9.47 16 9 C 0.12 1.61 5.61 -4.97 -0.03 1.58 16 10 C -0.18 -3.13 5.40 -104.58 -0.56 -3.70 16 11 C -0.07 -1.21 9.69 -39.61 -0.38 -1.59 16 12 C -0.23 -5.13 9.17 -39.39 -0.36 -5.49 16 13 C 0.16 3.81 6.65 -39.11 -0.26 3.55 16 14 O -0.18 -5.14 9.76 0.05 0.00 -5.14 16 15 C -0.39 -11.02 9.49 30.89 0.29 -10.73 16 16 H 0.09 2.36 5.20 -52.49 -0.27 2.09 16 17 C 0.04 1.07 5.49 -17.51 -0.10 0.98 16 18 N -0.86 -25.46 13.67 55.48 0.76 -24.70 16 19 Si 0.94 20.61 29.55 -169.99 -5.02 15.59 16 20 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 21 H -0.28 -5.95 7.11 56.52 0.40 -5.54 16 22 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 23 C -0.19 -4.17 9.99 -39.39 -0.39 -4.57 16 24 C -0.05 -0.93 9.69 -39.60 -0.38 -1.32 16 25 C -0.02 -0.22 7.32 -35.63 -0.26 -0.48 16 26 C -0.07 -0.52 10.11 36.00 0.36 -0.16 16 27 O -0.18 -2.09 10.65 5.71 0.06 -2.03 16 28 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.15 1.80 8.01 -52.49 -0.42 1.38 16 32 H 0.06 0.58 7.45 -51.93 -0.39 0.19 16 33 H 0.05 0.44 7.76 -51.93 -0.40 0.04 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.34 4.71 7.75 -39.29 -0.30 4.41 16 36 H 0.07 0.91 7.38 -51.93 -0.38 0.53 16 37 H 0.03 0.34 8.00 -51.93 -0.42 -0.07 16 38 H 0.10 1.62 8.06 -52.49 -0.42 1.19 16 39 H 0.13 2.75 5.64 -52.49 -0.30 2.45 16 40 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 41 H 0.12 2.41 8.06 -52.49 -0.42 1.99 16 42 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 43 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.09 0.53 7.49 -51.93 -0.39 0.15 16 LS Contribution 377.94 15.07 5.70 5.70 Total: -1.00 -31.60 377.94 -8.49 -40.09 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: -6.61 Total: 7.18 kcal Atomic # 6 Polarization: -24.51 SS G_CDS: -2.71 Total: -27.22 kcal Atomic # 7 Polarization: -34.26 SS G_CDS: 0.10 Total: -34.17 kcal Atomic # 8 Polarization: -7.23 SS G_CDS: 0.06 Total: -7.17 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -31.60 -8.49 -40.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044729769.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.629 kcal (2) G-P(sol) polarization free energy of solvation -31.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds