Wall clock time and date at job start Tue Mar 31 2020 10:38:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86805 * 119.99515 * 2 1 4 4 H 1.48501 * 109.47172 * 269.99612 * 3 2 1 5 5 H 1.48499 * 109.47350 * 30.00058 * 3 2 1 6 6 H 1.48505 * 109.46686 * 149.99803 * 3 2 1 7 7 C 1.37871 * 120.00471 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00441 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99767 * 0.02562 * 7 2 1 10 10 C 1.53008 * 109.46927 * 179.97438 * 9 7 2 11 11 O 1.42897 * 109.46839 * 179.97438 * 10 9 7 12 12 C 1.35897 * 116.99798 * 179.97438 * 11 10 9 13 13 C 1.38800 * 120.02073 * 0.02562 * 12 11 10 14 14 C 1.38172 * 120.08324 * 179.97438 * 13 12 11 15 15 C 1.38165 * 120.12729 * 0.02562 * 14 13 12 16 16 C 1.38883 * 120.03883 * 0.25532 * 15 14 13 17 17 N 1.39916 * 120.04315 * 179.72345 * 16 15 14 18 18 C 1.34776 * 120.00158 * 33.33031 * 17 16 15 19 19 O 1.21294 * 119.99835 * 5.27073 * 18 17 16 20 20 C 1.50703 * 120.00466 * 185.27444 * 18 17 16 21 21 C 1.52991 * 109.47121 * 179.97438 * 20 18 17 22 22 H 1.09000 * 110.34726 * 54.29804 * 21 20 18 23 23 C 1.51102 * 110.39109 * 292.00959 * 21 20 18 24 24 C 1.30523 * 111.10608 * 224.75585 * 23 21 20 25 25 C 1.51096 * 111.10588 * 359.97438 * 24 23 21 26 26 C 1.54636 * 110.38542 * 176.58661 * 21 20 18 27 27 C 1.38590 * 120.01782 * 179.97438 * 12 11 10 28 28 H 0.96994 * 120.00242 * 0.02562 * 1 2 3 29 29 H 1.08999 * 109.47198 * 59.99742 * 9 7 2 30 30 H 1.08993 * 109.46974 * 299.99258 * 9 7 2 31 31 H 1.08999 * 109.47140 * 60.00016 * 10 9 7 32 32 H 1.08998 * 109.46933 * 300.00089 * 10 9 7 33 33 H 1.08003 * 119.95903 * 359.95304 * 13 12 11 34 34 H 1.08004 * 119.93503 * 179.97438 * 14 13 12 35 35 H 1.08004 * 119.97894 * 179.97438 * 15 14 13 36 36 H 0.97005 * 120.00309 * 213.32471 * 17 16 15 37 37 H 1.09001 * 109.47049 * 299.99682 * 20 18 17 38 38 H 1.08995 * 109.46674 * 59.99520 * 20 18 17 39 39 H 1.07999 * 124.44483 * 44.73145 * 23 21 20 40 40 H 1.08000 * 124.44786 * 180.02562 * 24 23 21 41 41 H 1.09001 * 110.38693 * 135.24854 * 25 24 23 42 42 H 1.09002 * 110.39277 * 257.51105 * 25 24 23 43 43 H 1.09002 * 111.04002 * 261.47921 * 26 21 20 44 44 H 1.08996 * 111.04008 * 25.41417 * 26 21 20 45 45 H 1.08001 * 120.06288 * 0.02562 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2456 -3.6620 0.0005 11 8 1.5311 -4.8996 0.0011 12 6 2.2713 -6.0392 0.0007 13 6 3.6575 -5.9670 0.0002 14 6 4.4113 -7.1250 0.0003 15 6 3.7882 -8.3581 0.0003 16 6 2.4016 -8.4364 -0.0052 17 7 1.7706 -9.6852 -0.0110 18 6 2.3346 -10.7283 0.6295 19 8 3.3382 -10.5634 1.2904 20 6 1.7183 -12.0996 0.5247 21 6 2.5478 -13.0949 1.3383 22 1 2.6605 -12.7449 2.3644 23 6 3.9021 -13.2976 0.6996 24 6 4.2186 -14.5633 0.6605 25 6 3.1285 -15.4157 1.2671 26 6 1.8865 -14.4926 1.3155 27 6 1.6426 -7.2743 0.0018 28 1 -0.4850 0.8400 -0.0004 29 1 0.6248 -2.5571 -0.8896 30 1 0.6243 -2.5567 0.8903 31 1 2.8722 -3.6042 0.8905 32 1 2.8722 -3.6042 -0.8894 33 1 4.1474 -5.0045 -0.0006 34 1 5.4898 -7.0660 -0.0005 35 1 4.3799 -9.2617 -0.0001 36 1 0.9270 -9.8002 -0.4760 37 1 0.7004 -12.0711 0.9135 38 1 1.6998 -12.4106 -0.5197 39 1 4.5260 -12.5000 0.3243 40 1 5.1392 -14.9504 0.2493 41 1 2.9320 -16.2846 0.6389 42 1 3.4078 -15.7306 2.2726 43 1 1.3041 -14.6648 2.2206 44 1 1.2700 -14.6193 0.4256 45 1 0.5642 -7.3324 0.0025 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055569458.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:38:26 Heat of formation + Delta-G solvation = -44.875592 kcal Electronic energy + Delta-G solvation = -24476.263529 eV Core-core repulsion = 20844.709336 eV Total energy + Delta-G solvation = -3631.554193 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.82275 -39.58492 -38.65789 -37.03878 -34.63258 -33.37090 -32.09119 -30.89902 -29.67123 -29.27895 -28.83605 -25.96403 -25.02135 -22.65074 -22.60424 -21.06943 -20.70344 -20.25284 -19.05753 -18.22154 -17.41587 -16.47416 -16.26541 -16.05180 -15.88403 -15.53333 -15.31092 -15.17730 -14.85653 -14.43697 -14.19893 -13.54399 -13.29259 -12.91529 -12.71540 -12.43559 -12.32611 -12.23657 -12.20810 -11.88745 -11.68407 -11.61219 -11.50416 -11.35307 -11.14616 -10.92538 -10.80095 -10.53337 -10.30613 -9.98955 -9.79314 -9.66029 -9.30787 -9.21708 -8.46452 -8.32043 -7.77199 -6.11024 -4.15685 1.32481 1.67886 1.99383 2.43757 2.79178 3.27200 3.33263 3.36225 3.87055 3.96835 4.15177 4.22790 4.40977 4.45051 4.54520 4.82372 4.96248 5.00041 5.05805 5.16152 5.24680 5.25472 5.35804 5.36023 5.43466 5.46872 5.52884 5.56196 5.65756 5.78088 5.80627 5.89800 6.03306 6.04484 6.25347 6.31511 6.36058 6.54236 6.59589 6.61304 6.73205 6.99004 7.22238 7.49398 7.63050 7.80076 7.91685 8.04324 8.23033 8.89875 9.48743 11.00497 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.047717 B = 0.001822 C = 0.001773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.650995 B =15361.945521 C =15785.190911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.061 3.939 3 Si 0.899 3.101 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.527 4.527 8 H 0.059 0.941 9 C 0.025 3.975 10 C 0.065 3.935 11 O -0.315 6.315 12 C 0.163 3.837 13 C -0.224 4.224 14 C -0.062 4.062 15 C -0.169 4.169 16 C 0.178 3.822 17 N -0.674 5.674 18 C 0.511 3.489 19 O -0.514 6.514 20 C -0.131 4.131 21 C -0.055 4.055 22 H 0.091 0.909 23 C -0.143 4.143 24 C -0.180 4.180 25 C -0.100 4.100 26 C -0.122 4.122 27 C -0.190 4.190 28 H 0.263 0.737 29 H 0.028 0.972 30 H 0.028 0.972 31 H 0.052 0.948 32 H 0.052 0.948 33 H 0.132 0.868 34 H 0.124 0.876 35 H 0.129 0.871 36 H 0.410 0.590 37 H 0.098 0.902 38 H 0.098 0.902 39 H 0.125 0.875 40 H 0.122 0.878 41 H 0.068 0.932 42 H 0.073 0.927 43 H 0.074 0.926 44 H 0.073 0.927 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.959 -30.027 -0.531 30.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.142 4.142 3 Si 0.726 3.274 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.565 4.565 8 H 0.077 0.923 9 C -0.012 4.012 10 C -0.009 4.009 11 O -0.228 6.228 12 C 0.116 3.884 13 C -0.243 4.243 14 C -0.081 4.081 15 C -0.190 4.190 16 C 0.084 3.916 17 N -0.319 5.319 18 C 0.299 3.701 19 O -0.388 6.388 20 C -0.171 4.171 21 C -0.073 4.073 22 H 0.110 0.890 23 C -0.161 4.161 24 C -0.198 4.198 25 C -0.137 4.137 26 C -0.160 4.160 27 C -0.211 4.211 28 H 0.073 0.927 29 H 0.046 0.954 30 H 0.046 0.954 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.149 0.851 34 H 0.142 0.858 35 H 0.147 0.853 36 H 0.246 0.754 37 H 0.116 0.884 38 H 0.117 0.883 39 H 0.143 0.857 40 H 0.140 0.860 41 H 0.087 0.913 42 H 0.092 0.908 43 H 0.093 0.907 44 H 0.092 0.908 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 4.295 -29.819 -0.042 30.126 hybrid contribution 0.260 1.105 -0.264 1.166 sum 4.555 -28.713 -0.306 29.074 Atomic orbital electron populations 1.69975 1.06097 1.26968 1.49715 1.24988 0.94910 0.99386 0.94893 0.86483 0.79749 0.82911 0.78214 1.20496 1.21048 1.19755 1.20976 0.93082 0.90206 1.52240 0.92325 1.19132 0.94188 0.89021 0.98876 1.23354 0.97097 0.80643 0.99800 1.86159 1.36560 1.13174 1.86880 1.18820 0.89924 0.87080 0.92618 1.21389 0.93087 0.99945 1.09915 1.20779 0.99545 0.91361 0.96428 1.20859 0.92639 0.98452 1.07018 1.17294 0.91650 0.83698 0.98949 1.43566 1.26040 1.08333 1.53938 1.20883 0.84706 0.86224 0.78288 1.90741 1.24739 1.84736 1.38595 1.21742 1.00914 0.91262 1.03223 1.20839 0.92649 0.94030 0.99821 0.89047 1.23299 0.97126 0.96986 0.98727 1.23257 0.99706 0.95499 1.01347 1.21370 0.93486 0.98096 1.00725 1.22593 0.97233 0.93732 1.02402 1.20001 1.00026 0.88981 1.12073 0.92714 0.95393 0.95375 0.93019 0.93005 0.85057 0.85786 0.85276 0.75404 0.88355 0.88337 0.85699 0.86038 0.91317 0.90829 0.90708 0.90812 0.85144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.39 13.29 55.43 0.74 -25.66 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.90 21.26 29.54 -169.99 -5.02 16.24 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 7 C -0.53 -14.68 9.11 -34.44 -0.31 -15.00 16 8 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 9 C 0.02 0.65 5.34 -27.88 -0.15 0.50 16 10 C 0.07 1.39 4.68 37.16 0.17 1.57 16 11 O -0.31 -6.46 10.13 -19.42 -0.20 -6.65 16 12 C 0.16 2.87 6.68 -39.24 -0.26 2.61 16 13 C -0.22 -3.60 9.04 -39.40 -0.36 -3.95 16 14 C -0.06 -0.88 10.03 -39.63 -0.40 -1.28 16 15 C -0.17 -2.40 8.65 -39.37 -0.34 -2.74 16 16 C 0.18 2.41 6.28 -83.72 -0.53 1.88 16 17 N -0.67 -6.66 5.34 -9.88 -0.05 -6.71 16 18 C 0.51 5.16 7.35 -10.98 -0.08 5.08 16 19 O -0.51 -7.07 12.48 5.55 0.07 -7.00 16 20 C -0.13 -0.82 5.11 -27.89 -0.14 -0.96 16 21 C -0.05 -0.40 2.52 -90.72 -0.23 -0.63 16 22 H 0.09 0.82 7.96 -51.93 -0.41 0.40 16 23 C -0.14 -1.22 9.23 -35.70 -0.33 -1.55 16 24 C -0.18 -1.32 10.78 -35.70 -0.38 -1.71 16 25 C -0.10 -0.59 6.81 -26.72 -0.18 -0.77 16 26 C -0.12 -0.66 6.72 -24.91 -0.17 -0.83 16 27 C -0.19 -2.86 9.90 -39.24 -0.39 -3.25 16 28 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 29 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.05 1.06 7.66 -51.93 -0.40 0.66 16 32 H 0.05 1.05 7.66 -51.93 -0.40 0.65 16 33 H 0.13 2.05 6.29 -52.48 -0.33 1.72 16 34 H 0.12 1.44 8.06 -52.48 -0.42 1.02 16 35 H 0.13 1.79 6.41 -52.48 -0.34 1.45 16 36 H 0.41 2.67 8.82 -40.82 -0.36 2.31 16 37 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.13 1.23 7.44 -52.49 -0.39 0.84 16 40 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 41 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.07 0.33 7.91 -51.93 -0.41 -0.08 16 45 H 0.13 1.76 8.06 -52.49 -0.42 1.34 16 LS Contribution 373.15 15.07 5.62 5.62 Total: -1.00 -32.63 373.15 -9.82 -42.45 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -6.81 Total: 1.13 kcal Atomic # 6 Polarization: -15.24 SS G_CDS: -4.17 Total: -19.42 kcal Atomic # 7 Polarization: -33.06 SS G_CDS: 0.68 Total: -32.37 kcal Atomic # 8 Polarization: -13.52 SS G_CDS: -0.13 Total: -13.65 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.63 -9.82 -42.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055569458.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.426 kcal (2) G-P(sol) polarization free energy of solvation -32.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds