Wall clock time and date at job start Tue Mar 31 2020 10:38:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31520 * 1
3 3 Si 1.86805 * 119.99515 * 2 1
4 4 H 1.48501 * 109.47172 * 269.99612 * 3 2 1
5 5 H 1.48499 * 109.47350 * 30.00058 * 3 2 1
6 6 H 1.48505 * 109.46686 * 149.99803 * 3 2 1
7 7 C 1.37871 * 120.00471 * 179.97438 * 2 1 3
8 8 H 1.07997 * 120.00441 * 180.02562 * 7 2 1
9 9 C 1.50703 * 119.99767 * 0.02562 * 7 2 1
10 10 C 1.53008 * 109.46927 * 179.97438 * 9 7 2
11 11 O 1.42897 * 109.46839 * 179.97438 * 10 9 7
12 12 C 1.35897 * 116.99798 * 179.97438 * 11 10 9
13 13 C 1.38800 * 120.02073 * 0.02562 * 12 11 10
14 14 C 1.38172 * 120.08324 * 179.97438 * 13 12 11
15 15 C 1.38165 * 120.12729 * 0.02562 * 14 13 12
16 16 C 1.38883 * 120.03883 * 0.25532 * 15 14 13
17 17 N 1.39916 * 120.04315 * 179.72345 * 16 15 14
18 18 C 1.34776 * 120.00158 * 33.33031 * 17 16 15
19 19 O 1.21294 * 119.99835 * 5.27073 * 18 17 16
20 20 C 1.50703 * 120.00466 * 185.27444 * 18 17 16
21 21 C 1.52991 * 109.47121 * 179.97438 * 20 18 17
22 22 H 1.09000 * 110.34726 * 54.29804 * 21 20 18
23 23 C 1.51102 * 110.39109 * 292.00959 * 21 20 18
24 24 C 1.30523 * 111.10608 * 224.75585 * 23 21 20
25 25 C 1.51096 * 111.10588 * 359.97438 * 24 23 21
26 26 C 1.54636 * 110.38542 * 176.58661 * 21 20 18
27 27 C 1.38590 * 120.01782 * 179.97438 * 12 11 10
28 28 H 0.96994 * 120.00242 * 0.02562 * 1 2 3
29 29 H 1.08999 * 109.47198 * 59.99742 * 9 7 2
30 30 H 1.08993 * 109.46974 * 299.99258 * 9 7 2
31 31 H 1.08999 * 109.47140 * 60.00016 * 10 9 7
32 32 H 1.08998 * 109.46933 * 300.00089 * 10 9 7
33 33 H 1.08003 * 119.95903 * 359.95304 * 13 12 11
34 34 H 1.08004 * 119.93503 * 179.97438 * 14 13 12
35 35 H 1.08004 * 119.97894 * 179.97438 * 15 14 13
36 36 H 0.97005 * 120.00309 * 213.32471 * 17 16 15
37 37 H 1.09001 * 109.47049 * 299.99682 * 20 18 17
38 38 H 1.08995 * 109.46674 * 59.99520 * 20 18 17
39 39 H 1.07999 * 124.44483 * 44.73145 * 23 21 20
40 40 H 1.08000 * 124.44786 * 180.02562 * 24 23 21
41 41 H 1.09001 * 110.38693 * 135.24854 * 25 24 23
42 42 H 1.09002 * 110.39277 * 257.51105 * 25 24 23
43 43 H 1.09002 * 111.04002 * 261.47921 * 26 21 20
44 44 H 1.08996 * 111.04008 * 25.41417 * 26 21 20
45 45 H 1.08001 * 120.06288 * 0.02562 * 27 12 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2491 1.6179 0.0000
4 1 2.4966 2.0465 -1.4001
5 1 1.4465 2.6527 0.7000
6 1 3.5466 1.4403 0.7001
7 6 2.0046 -1.1939 0.0005
8 1 3.0846 -1.1939 0.0010
9 6 1.2512 -2.4991 0.0005
10 6 2.2456 -3.6620 0.0005
11 8 1.5311 -4.8996 0.0011
12 6 2.2713 -6.0392 0.0007
13 6 3.6575 -5.9670 0.0002
14 6 4.4113 -7.1250 0.0003
15 6 3.7882 -8.3581 0.0003
16 6 2.4016 -8.4364 -0.0052
17 7 1.7706 -9.6852 -0.0110
18 6 2.3346 -10.7283 0.6295
19 8 3.3382 -10.5634 1.2904
20 6 1.7183 -12.0996 0.5247
21 6 2.5478 -13.0949 1.3383
22 1 2.6605 -12.7449 2.3644
23 6 3.9021 -13.2976 0.6996
24 6 4.2186 -14.5633 0.6605
25 6 3.1285 -15.4157 1.2671
26 6 1.8865 -14.4926 1.3155
27 6 1.6426 -7.2743 0.0018
28 1 -0.4850 0.8400 -0.0004
29 1 0.6248 -2.5571 -0.8896
30 1 0.6243 -2.5567 0.8903
31 1 2.8722 -3.6042 0.8905
32 1 2.8722 -3.6042 -0.8894
33 1 4.1474 -5.0045 -0.0006
34 1 5.4898 -7.0660 -0.0005
35 1 4.3799 -9.2617 -0.0001
36 1 0.9270 -9.8002 -0.4760
37 1 0.7004 -12.0711 0.9135
38 1 1.6998 -12.4106 -0.5197
39 1 4.5260 -12.5000 0.3243
40 1 5.1392 -14.9504 0.2493
41 1 2.9320 -16.2846 0.6389
42 1 3.4078 -15.7306 2.2726
43 1 1.3041 -14.6648 2.2206
44 1 1.2700 -14.6193 0.4256
45 1 0.5642 -7.3324 0.0025
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000055569458.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:38:25
Heat of formation + Delta-G solvation = -63.121993 kcal
Electronic energy + Delta-G solvation = -24477.054752 eV
Core-core repulsion = 20844.709336 eV
Total energy + Delta-G solvation = -3632.345417 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 315.162 amu
Computer time = 0.93 seconds
Orbital eigenvalues (eV)
-41.75737 -40.73706 -39.42091 -38.23687 -35.72089 -35.36526 -32.72382 -32.60873
-31.05490 -30.09055 -29.72117 -27.10123 -26.47125 -24.01568 -23.76464 -22.46479
-21.43583 -21.23395 -19.69615 -19.47201 -18.46290 -18.13014 -17.20078 -16.99177
-16.93415 -16.86141 -16.78667 -16.43675 -15.88697 -15.75098 -14.98964 -14.61514
-14.47480 -14.34129 -14.28953 -13.77970 -13.27041 -13.24919 -12.96231 -12.86737
-12.76219 -12.67944 -12.65568 -12.55513 -12.13334 -12.06273 -11.98886 -11.75527
-11.67125 -11.57948 -11.40407 -11.24283 -10.82541 -10.61576 -9.77892 -9.47973
-9.00670 -8.26480 -6.39952 0.20196 0.45538 1.40038 1.41316 1.43322
1.54401 1.60234 1.89432 2.32938 2.57268 2.79639 3.08041 3.55334
3.73603 3.85077 3.96189 3.97097 4.14706 4.18913 4.24614 4.27933
4.37099 4.41042 4.51461 4.56877 4.58794 4.68596 4.69441 4.76961
4.77968 4.99909 5.01495 5.11669 5.22225 5.24495 5.30468 5.33577
5.38612 5.44542 5.47717 5.49808 5.68264 5.70595 5.88650 6.00649
6.07746 6.42598 6.51997 6.74666 7.13140 7.30125 8.86460
Molecular weight = 315.16amu
Principal moments of inertia in cm(-1)
A = 0.047717 B = 0.001822 C = 0.001773
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 586.650995 B =15361.945521 C =15785.190911
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.930 5.930
2 C 0.003 3.997
3 Si 0.975 3.025
4 H -0.270 1.270
5 H -0.281 1.281
6 H -0.261 1.261
7 C -0.547 4.547
8 H 0.070 0.930
9 C 0.028 3.972
10 C 0.083 3.917
11 O -0.336 6.336
12 C 0.132 3.868
13 C -0.234 4.234
14 C -0.060 4.060
15 C -0.172 4.172
16 C 0.184 3.816
17 N -0.664 5.664
18 C 0.509 3.491
19 O -0.553 6.553
20 C -0.121 4.121
21 C -0.056 4.056
22 H 0.070 0.930
23 C -0.167 4.167
24 C -0.176 4.176
25 C -0.102 4.102
26 C -0.115 4.115
27 C -0.192 4.192
28 H 0.267 0.733
29 H 0.001 0.999
30 H -0.001 1.001
31 H 0.059 0.941
32 H 0.063 0.937
33 H 0.132 0.868
34 H 0.150 0.850
35 H 0.133 0.867
36 H 0.428 0.572
37 H 0.127 0.873
38 H 0.122 0.878
39 H 0.104 0.896
40 H 0.127 0.873
41 H 0.082 0.918
42 H 0.075 0.925
43 H 0.084 0.916
44 H 0.090 0.910
45 H 0.142 0.858
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.503 -31.719 -0.880 32.049
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.569 5.569
2 C -0.196 4.196
3 Si 0.799 3.201
4 H -0.195 1.195
5 H -0.207 1.207
6 H -0.185 1.185
7 C -0.585 4.585
8 H 0.088 0.912
9 C -0.009 4.009
10 C 0.009 3.991
11 O -0.250 6.250
12 C 0.085 3.915
13 C -0.254 4.254
14 C -0.078 4.078
15 C -0.193 4.193
16 C 0.089 3.911
17 N -0.311 5.311
18 C 0.299 3.701
19 O -0.430 6.430
20 C -0.161 4.161
21 C -0.075 4.075
22 H 0.088 0.912
23 C -0.185 4.185
24 C -0.194 4.194
25 C -0.139 4.139
26 C -0.152 4.152
27 C -0.213 4.213
28 H 0.075 0.925
29 H 0.019 0.981
30 H 0.017 0.983
31 H 0.077 0.923
32 H 0.081 0.919
33 H 0.150 0.850
34 H 0.168 0.832
35 H 0.151 0.849
36 H 0.267 0.733
37 H 0.145 0.855
38 H 0.140 0.860
39 H 0.122 0.878
40 H 0.145 0.855
41 H 0.101 0.899
42 H 0.093 0.907
43 H 0.103 0.897
44 H 0.109 0.891
45 H 0.160 0.840
Dipole moment (debyes) X Y Z Total
from point charges 4.823 -31.555 -0.408 31.924
hybrid contribution 0.116 1.439 -0.146 1.451
sum 4.938 -30.116 -0.554 30.523
Atomic orbital electron populations
1.70114 1.07978 1.28195 1.50597 1.26018 0.95824 1.03602 0.94162
0.85297 0.78548 0.77627 0.78656 1.19512 1.20672 1.18462 1.21406
0.93854 0.91069 1.52163 0.91150 1.18973 0.94559 0.91271 0.96140
1.22899 0.95460 0.80063 1.00659 1.86074 1.37271 1.13612 1.88031
1.19131 0.90717 0.86634 0.94989 1.21468 0.92635 1.00729 1.10518
1.21052 1.00825 0.90647 0.95294 1.21066 0.93139 0.98618 1.06446
1.17360 0.91605 0.84737 0.97440 1.43590 1.26637 1.06978 1.53861
1.21664 0.84063 0.87307 0.77069 1.90728 1.26619 1.85365 1.40315
1.21805 1.01599 0.88040 1.04632 1.20834 0.92506 0.95548 0.98599
0.91225 1.23289 0.98086 0.96937 1.00223 1.23515 1.00196 0.95451
1.00197 1.21439 0.93166 0.98418 1.00916 1.22603 0.97076 0.91820
1.03742 1.20154 1.00824 0.88589 1.11772 0.92456 0.98077 0.98260
0.92254 0.91903 0.84990 0.83246 0.84934 0.73288 0.85491 0.86035
0.87776 0.85536 0.89902 0.90683 0.89689 0.89134 0.83979
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -56.40 13.29 21.45 0.28 -56.11 16
2 C 0.00 0.15 5.46 84.65 0.46 0.61 16
3 Si 0.98 43.53 29.54 68.60 2.03 45.56 16
4 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16
5 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16
6 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16
7 C -0.55 -30.92 9.11 25.60 0.23 -30.68 16
8 H 0.07 3.72 7.74 -2.91 -0.02 3.69 16
9 C 0.03 1.52 5.34 29.85 0.16 1.68 16
10 C 0.08 3.66 4.68 71.98 0.34 4.00 16
11 O -0.34 -14.17 10.13 -92.39 -0.94 -15.10 16
12 C 0.13 4.66 6.68 22.49 0.15 4.81 16
13 C -0.23 -7.46 9.04 22.39 0.20 -7.26 16
14 C -0.06 -1.63 10.03 22.24 0.22 -1.41 16
15 C -0.17 -4.72 8.65 22.41 0.19 -4.53 16
16 C 0.18 4.79 6.28 38.14 0.24 5.03 16
17 N -0.66 -11.96 5.34 -303.54 -1.62 -13.58 16
18 C 0.51 9.53 7.35 87.66 0.64 10.17 16
19 O -0.55 -15.04 12.48 -3.07 -0.04 -15.08 16
20 C -0.12 -1.20 5.11 29.85 0.15 -1.04 16
21 C -0.06 -0.74 2.52 -10.86 -0.03 -0.77 16
22 H 0.07 1.21 7.96 -2.39 -0.02 1.20 16
23 C -0.17 -2.76 9.23 26.27 0.24 -2.52 16
24 C -0.18 -2.37 10.78 26.26 0.28 -2.09 16
25 C -0.10 -0.99 6.81 30.60 0.21 -0.78 16
26 C -0.12 -0.92 6.72 31.78 0.21 -0.71 16
27 C -0.19 -5.72 9.90 22.49 0.22 -5.49 16
28 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16
29 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16
30 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16
31 H 0.06 2.47 7.66 -2.39 -0.02 2.46 16
32 H 0.06 2.58 7.66 -2.39 -0.02 2.56 16
33 H 0.13 4.09 6.29 -2.91 -0.02 4.08 16
34 H 0.15 3.22 8.06 -2.91 -0.02 3.20 16
35 H 0.13 3.58 6.41 -2.91 -0.02 3.56 16
36 H 0.43 4.52 8.82 -92.70 -0.82 3.70 16
37 H 0.13 0.58 8.14 -2.39 -0.02 0.56 16
38 H 0.12 0.71 8.14 -2.39 -0.02 0.69 16
39 H 0.10 2.11 7.44 -2.91 -0.02 2.09 16
40 H 0.13 1.49 8.06 -2.91 -0.02 1.46 16
41 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16
42 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16
43 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16
44 H 0.09 0.45 7.91 -2.39 -0.02 0.43 16
45 H 0.14 3.76 8.06 -2.91 -0.02 3.74 16
Total: -1.00 -72.67 373.15 4.03 -68.64
By element:
Atomic # 1 Polarization: 16.49 SS G_CDS: 0.17 Total: 16.66 kcal
Atomic # 6 Polarization: -35.12 SS G_CDS: 4.14 Total: -30.98 kcal
Atomic # 7 Polarization: -68.36 SS G_CDS: -1.34 Total: -69.69 kcal
Atomic # 8 Polarization: -29.20 SS G_CDS: -0.97 Total: -30.18 kcal
Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal
Total: -72.67 4.03 -68.64 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000055569458.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 5.518 kcal
(2) G-P(sol) polarization free energy of solvation -72.666 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.148 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.026 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.640 kcal
(6) G-S(sol) free energy of system = (1) + (5) -63.122 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.93 seconds