Wall clock time and date at job start Tue Mar 31 2020 10:38:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86805 * 119.99515 * 2 1 4 4 H 1.48501 * 109.47172 * 269.99612 * 3 2 1 5 5 H 1.48499 * 109.47350 * 30.00058 * 3 2 1 6 6 H 1.48505 * 109.46686 * 149.99803 * 3 2 1 7 7 C 1.37871 * 120.00471 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00441 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99767 * 0.02562 * 7 2 1 10 10 C 1.53008 * 109.46927 * 179.97438 * 9 7 2 11 11 O 1.42897 * 109.46839 * 179.97438 * 10 9 7 12 12 C 1.35897 * 116.99798 * 179.97438 * 11 10 9 13 13 C 1.38800 * 120.02073 * 0.02562 * 12 11 10 14 14 C 1.38172 * 120.08324 * 179.97438 * 13 12 11 15 15 C 1.38165 * 120.12729 * 0.02562 * 14 13 12 16 16 C 1.38883 * 120.03883 * 0.25532 * 15 14 13 17 17 N 1.39916 * 120.04315 * 179.72345 * 16 15 14 18 18 C 1.34776 * 120.00158 * 33.33031 * 17 16 15 19 19 O 1.21294 * 119.99835 * 5.27073 * 18 17 16 20 20 C 1.50703 * 120.00466 * 185.27444 * 18 17 16 21 21 C 1.52991 * 109.47121 * 179.97438 * 20 18 17 22 22 H 1.09000 * 110.34726 * 54.29804 * 21 20 18 23 23 C 1.51102 * 110.39109 * 292.00959 * 21 20 18 24 24 C 1.30523 * 111.10608 * 224.75585 * 23 21 20 25 25 C 1.51096 * 111.10588 * 359.97438 * 24 23 21 26 26 C 1.54636 * 110.38542 * 176.58661 * 21 20 18 27 27 C 1.38590 * 120.01782 * 179.97438 * 12 11 10 28 28 H 0.96994 * 120.00242 * 0.02562 * 1 2 3 29 29 H 1.08999 * 109.47198 * 59.99742 * 9 7 2 30 30 H 1.08993 * 109.46974 * 299.99258 * 9 7 2 31 31 H 1.08999 * 109.47140 * 60.00016 * 10 9 7 32 32 H 1.08998 * 109.46933 * 300.00089 * 10 9 7 33 33 H 1.08003 * 119.95903 * 359.95304 * 13 12 11 34 34 H 1.08004 * 119.93503 * 179.97438 * 14 13 12 35 35 H 1.08004 * 119.97894 * 179.97438 * 15 14 13 36 36 H 0.97005 * 120.00309 * 213.32471 * 17 16 15 37 37 H 1.09001 * 109.47049 * 299.99682 * 20 18 17 38 38 H 1.08995 * 109.46674 * 59.99520 * 20 18 17 39 39 H 1.07999 * 124.44483 * 44.73145 * 23 21 20 40 40 H 1.08000 * 124.44786 * 180.02562 * 24 23 21 41 41 H 1.09001 * 110.38693 * 135.24854 * 25 24 23 42 42 H 1.09002 * 110.39277 * 257.51105 * 25 24 23 43 43 H 1.09002 * 111.04002 * 261.47921 * 26 21 20 44 44 H 1.08996 * 111.04008 * 25.41417 * 26 21 20 45 45 H 1.08001 * 120.06288 * 0.02562 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2456 -3.6620 0.0005 11 8 1.5311 -4.8996 0.0011 12 6 2.2713 -6.0392 0.0007 13 6 3.6575 -5.9670 0.0002 14 6 4.4113 -7.1250 0.0003 15 6 3.7882 -8.3581 0.0003 16 6 2.4016 -8.4364 -0.0052 17 7 1.7706 -9.6852 -0.0110 18 6 2.3346 -10.7283 0.6295 19 8 3.3382 -10.5634 1.2904 20 6 1.7183 -12.0996 0.5247 21 6 2.5478 -13.0949 1.3383 22 1 2.6605 -12.7449 2.3644 23 6 3.9021 -13.2976 0.6996 24 6 4.2186 -14.5633 0.6605 25 6 3.1285 -15.4157 1.2671 26 6 1.8865 -14.4926 1.3155 27 6 1.6426 -7.2743 0.0018 28 1 -0.4850 0.8400 -0.0004 29 1 0.6248 -2.5571 -0.8896 30 1 0.6243 -2.5567 0.8903 31 1 2.8722 -3.6042 0.8905 32 1 2.8722 -3.6042 -0.8894 33 1 4.1474 -5.0045 -0.0006 34 1 5.4898 -7.0660 -0.0005 35 1 4.3799 -9.2617 -0.0001 36 1 0.9270 -9.8002 -0.4760 37 1 0.7004 -12.0711 0.9135 38 1 1.6998 -12.4106 -0.5197 39 1 4.5260 -12.5000 0.3243 40 1 5.1392 -14.9504 0.2493 41 1 2.9320 -16.2846 0.6389 42 1 3.4078 -15.7306 2.2726 43 1 1.3041 -14.6648 2.2206 44 1 1.2700 -14.6193 0.4256 45 1 0.5642 -7.3324 0.0025 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000055569458.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:38:25 Heat of formation + Delta-G solvation = -63.121993 kcal Electronic energy + Delta-G solvation = -24477.054752 eV Core-core repulsion = 20844.709336 eV Total energy + Delta-G solvation = -3632.345417 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.75737 -40.73706 -39.42091 -38.23687 -35.72089 -35.36526 -32.72382 -32.60873 -31.05490 -30.09055 -29.72117 -27.10123 -26.47125 -24.01568 -23.76464 -22.46479 -21.43583 -21.23395 -19.69615 -19.47201 -18.46290 -18.13014 -17.20078 -16.99177 -16.93415 -16.86141 -16.78667 -16.43675 -15.88697 -15.75098 -14.98964 -14.61514 -14.47480 -14.34129 -14.28953 -13.77970 -13.27041 -13.24919 -12.96231 -12.86737 -12.76219 -12.67944 -12.65568 -12.55513 -12.13334 -12.06273 -11.98886 -11.75527 -11.67125 -11.57948 -11.40407 -11.24283 -10.82541 -10.61576 -9.77892 -9.47973 -9.00670 -8.26480 -6.39952 0.20196 0.45538 1.40038 1.41316 1.43322 1.54401 1.60234 1.89432 2.32938 2.57268 2.79639 3.08041 3.55334 3.73603 3.85077 3.96189 3.97097 4.14706 4.18913 4.24614 4.27933 4.37099 4.41042 4.51461 4.56877 4.58794 4.68596 4.69441 4.76961 4.77968 4.99909 5.01495 5.11669 5.22225 5.24495 5.30468 5.33577 5.38612 5.44542 5.47717 5.49808 5.68264 5.70595 5.88650 6.00649 6.07746 6.42598 6.51997 6.74666 7.13140 7.30125 8.86460 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.047717 B = 0.001822 C = 0.001773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.650995 B =15361.945521 C =15785.190911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.003 3.997 3 Si 0.975 3.025 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.261 1.261 7 C -0.547 4.547 8 H 0.070 0.930 9 C 0.028 3.972 10 C 0.083 3.917 11 O -0.336 6.336 12 C 0.132 3.868 13 C -0.234 4.234 14 C -0.060 4.060 15 C -0.172 4.172 16 C 0.184 3.816 17 N -0.664 5.664 18 C 0.509 3.491 19 O -0.553 6.553 20 C -0.121 4.121 21 C -0.056 4.056 22 H 0.070 0.930 23 C -0.167 4.167 24 C -0.176 4.176 25 C -0.102 4.102 26 C -0.115 4.115 27 C -0.192 4.192 28 H 0.267 0.733 29 H 0.001 0.999 30 H -0.001 1.001 31 H 0.059 0.941 32 H 0.063 0.937 33 H 0.132 0.868 34 H 0.150 0.850 35 H 0.133 0.867 36 H 0.428 0.572 37 H 0.127 0.873 38 H 0.122 0.878 39 H 0.104 0.896 40 H 0.127 0.873 41 H 0.082 0.918 42 H 0.075 0.925 43 H 0.084 0.916 44 H 0.090 0.910 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.503 -31.719 -0.880 32.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.196 4.196 3 Si 0.799 3.201 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.185 1.185 7 C -0.585 4.585 8 H 0.088 0.912 9 C -0.009 4.009 10 C 0.009 3.991 11 O -0.250 6.250 12 C 0.085 3.915 13 C -0.254 4.254 14 C -0.078 4.078 15 C -0.193 4.193 16 C 0.089 3.911 17 N -0.311 5.311 18 C 0.299 3.701 19 O -0.430 6.430 20 C -0.161 4.161 21 C -0.075 4.075 22 H 0.088 0.912 23 C -0.185 4.185 24 C -0.194 4.194 25 C -0.139 4.139 26 C -0.152 4.152 27 C -0.213 4.213 28 H 0.075 0.925 29 H 0.019 0.981 30 H 0.017 0.983 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.150 0.850 34 H 0.168 0.832 35 H 0.151 0.849 36 H 0.267 0.733 37 H 0.145 0.855 38 H 0.140 0.860 39 H 0.122 0.878 40 H 0.145 0.855 41 H 0.101 0.899 42 H 0.093 0.907 43 H 0.103 0.897 44 H 0.109 0.891 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 4.823 -31.555 -0.408 31.924 hybrid contribution 0.116 1.439 -0.146 1.451 sum 4.938 -30.116 -0.554 30.523 Atomic orbital electron populations 1.70114 1.07978 1.28195 1.50597 1.26018 0.95824 1.03602 0.94162 0.85297 0.78548 0.77627 0.78656 1.19512 1.20672 1.18462 1.21406 0.93854 0.91069 1.52163 0.91150 1.18973 0.94559 0.91271 0.96140 1.22899 0.95460 0.80063 1.00659 1.86074 1.37271 1.13612 1.88031 1.19131 0.90717 0.86634 0.94989 1.21468 0.92635 1.00729 1.10518 1.21052 1.00825 0.90647 0.95294 1.21066 0.93139 0.98618 1.06446 1.17360 0.91605 0.84737 0.97440 1.43590 1.26637 1.06978 1.53861 1.21664 0.84063 0.87307 0.77069 1.90728 1.26619 1.85365 1.40315 1.21805 1.01599 0.88040 1.04632 1.20834 0.92506 0.95548 0.98599 0.91225 1.23289 0.98086 0.96937 1.00223 1.23515 1.00196 0.95451 1.00197 1.21439 0.93166 0.98418 1.00916 1.22603 0.97076 0.91820 1.03742 1.20154 1.00824 0.88589 1.11772 0.92456 0.98077 0.98260 0.92254 0.91903 0.84990 0.83246 0.84934 0.73288 0.85491 0.86035 0.87776 0.85536 0.89902 0.90683 0.89689 0.89134 0.83979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.40 13.29 21.45 0.28 -56.11 16 2 C 0.00 0.15 5.46 84.65 0.46 0.61 16 3 Si 0.98 43.53 29.54 68.60 2.03 45.56 16 4 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 5 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 6 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 7 C -0.55 -30.92 9.11 25.60 0.23 -30.68 16 8 H 0.07 3.72 7.74 -2.91 -0.02 3.69 16 9 C 0.03 1.52 5.34 29.85 0.16 1.68 16 10 C 0.08 3.66 4.68 71.98 0.34 4.00 16 11 O -0.34 -14.17 10.13 -92.39 -0.94 -15.10 16 12 C 0.13 4.66 6.68 22.49 0.15 4.81 16 13 C -0.23 -7.46 9.04 22.39 0.20 -7.26 16 14 C -0.06 -1.63 10.03 22.24 0.22 -1.41 16 15 C -0.17 -4.72 8.65 22.41 0.19 -4.53 16 16 C 0.18 4.79 6.28 38.14 0.24 5.03 16 17 N -0.66 -11.96 5.34 -303.54 -1.62 -13.58 16 18 C 0.51 9.53 7.35 87.66 0.64 10.17 16 19 O -0.55 -15.04 12.48 -3.07 -0.04 -15.08 16 20 C -0.12 -1.20 5.11 29.85 0.15 -1.04 16 21 C -0.06 -0.74 2.52 -10.86 -0.03 -0.77 16 22 H 0.07 1.21 7.96 -2.39 -0.02 1.20 16 23 C -0.17 -2.76 9.23 26.27 0.24 -2.52 16 24 C -0.18 -2.37 10.78 26.26 0.28 -2.09 16 25 C -0.10 -0.99 6.81 30.60 0.21 -0.78 16 26 C -0.12 -0.92 6.72 31.78 0.21 -0.71 16 27 C -0.19 -5.72 9.90 22.49 0.22 -5.49 16 28 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 29 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 30 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 31 H 0.06 2.47 7.66 -2.39 -0.02 2.46 16 32 H 0.06 2.58 7.66 -2.39 -0.02 2.56 16 33 H 0.13 4.09 6.29 -2.91 -0.02 4.08 16 34 H 0.15 3.22 8.06 -2.91 -0.02 3.20 16 35 H 0.13 3.58 6.41 -2.91 -0.02 3.56 16 36 H 0.43 4.52 8.82 -92.70 -0.82 3.70 16 37 H 0.13 0.58 8.14 -2.39 -0.02 0.56 16 38 H 0.12 0.71 8.14 -2.39 -0.02 0.69 16 39 H 0.10 2.11 7.44 -2.91 -0.02 2.09 16 40 H 0.13 1.49 8.06 -2.91 -0.02 1.46 16 41 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 42 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 43 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 44 H 0.09 0.45 7.91 -2.39 -0.02 0.43 16 45 H 0.14 3.76 8.06 -2.91 -0.02 3.74 16 Total: -1.00 -72.67 373.15 4.03 -68.64 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: 0.17 Total: 16.66 kcal Atomic # 6 Polarization: -35.12 SS G_CDS: 4.14 Total: -30.98 kcal Atomic # 7 Polarization: -68.36 SS G_CDS: -1.34 Total: -69.69 kcal Atomic # 8 Polarization: -29.20 SS G_CDS: -0.97 Total: -30.18 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Total: -72.67 4.03 -68.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055569458.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.518 kcal (2) G-P(sol) polarization free energy of solvation -72.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds