Wall clock time and date at job start Tue Mar 31 2020 11:48:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38234 * 120.00169 * 2 1 4 4 C 1.38233 * 120.00281 * 179.97438 * 3 2 1 5 5 C 1.38232 * 119.99827 * 0.26379 * 4 3 2 6 6 C 1.50702 * 119.99944 * 179.72281 * 5 4 3 7 7 C 1.52999 * 109.46884 * 89.99931 * 6 5 4 8 8 N 1.46903 * 109.46949 * 180.02562 * 7 6 5 9 9 C 1.46899 * 111.00194 * 187.08260 * 8 7 6 10 10 C 1.53002 * 109.47182 * 177.16889 * 9 8 7 11 11 C 1.50701 * 109.46826 * 185.23795 * 10 9 8 12 12 H 1.07994 * 120.00044 * 0.02562 * 11 10 9 13 13 C 1.37886 * 119.99594 * 180.02562 * 11 10 9 14 14 N 1.31513 * 119.99552 * 359.97438 * 13 11 10 15 15 Si 1.86793 * 119.99823 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47032 * 359.97438 * 15 13 11 17 17 H 1.48503 * 109.47028 * 119.99969 * 15 13 11 18 18 H 1.48494 * 109.47262 * 239.99826 * 15 13 11 19 19 C 1.46899 * 111.00065 * 63.12985 * 8 7 6 20 20 C 1.53000 * 109.47071 * 63.03744 * 19 8 7 21 21 F 1.39905 * 109.47021 * 58.92375 * 20 19 8 22 22 F 1.39905 * 109.47112 * 178.92387 * 20 19 8 23 23 F 1.39896 * 109.47361 * 298.92131 * 20 19 8 24 24 C 1.38242 * 120.00029 * 359.48238 * 5 4 3 25 25 C 1.38229 * 119.99727 * 0.48871 * 24 5 4 26 26 H 1.09005 * 109.47182 * 89.99761 * 1 2 3 27 27 H 1.08998 * 109.47140 * 209.99844 * 1 2 3 28 28 H 1.08996 * 109.47193 * 329.99915 * 1 2 3 29 29 H 1.08001 * 119.99813 * 359.97438 * 3 2 1 30 30 H 1.08001 * 120.00027 * 179.97438 * 4 3 2 31 31 H 1.09000 * 109.46671 * 209.99402 * 6 5 4 32 32 H 1.08997 * 109.47100 * 329.99896 * 6 5 4 33 33 H 1.09000 * 109.47034 * 299.99248 * 7 6 5 34 34 H 1.09002 * 109.47709 * 59.99933 * 7 6 5 35 35 H 1.08995 * 109.47024 * 297.17499 * 9 8 7 36 36 H 1.08999 * 109.46804 * 57.17442 * 9 8 7 37 37 H 1.08998 * 109.47381 * 305.24040 * 10 9 8 38 38 H 1.08998 * 109.46900 * 65.24155 * 10 9 8 39 39 H 0.97008 * 119.99498 * 179.97438 * 14 13 11 40 40 H 1.08997 * 109.47458 * 183.03935 * 19 8 7 41 41 H 1.09001 * 109.47162 * 303.04094 * 19 8 7 42 42 H 1.07999 * 120.00065 * 180.26065 * 24 5 4 43 43 H 1.08001 * 120.00350 * 179.76244 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1971 0.0005 5 6 4.2717 0.0000 -0.0044 6 6 5.7787 0.0000 -0.0102 7 6 6.2941 -0.0028 1.4304 8 7 7.7631 -0.0021 1.4248 9 6 8.2948 -0.1738 2.7834 10 6 9.8225 -0.2388 2.7288 11 6 10.3617 -0.5432 4.1027 12 1 9.6828 -0.6773 4.9317 13 6 11.7220 -0.6504 4.3012 14 7 12.5487 -0.4876 3.2914 15 14 12.3904 -1.0283 6.0040 16 1 11.2619 -1.1657 6.9595 17 1 13.1619 -2.2966 5.9627 18 1 13.2788 0.0773 6.4437 19 6 8.2867 1.2228 0.8056 20 6 7.8615 2.4357 1.6355 21 9 8.3500 2.3028 2.9397 22 9 8.3807 3.6001 1.0594 23 9 6.4650 2.5134 1.6662 24 6 3.5805 -1.1972 0.0009 25 6 2.1982 -1.1972 0.0009 26 1 -0.3634 0.0000 -1.0277 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3633 0.8899 0.5138 29 1 1.6582 2.1324 -0.0004 30 1 4.1205 2.1325 0.0001 31 1 6.1400 -0.8890 -0.5270 32 1 6.1400 0.8910 -0.5236 33 1 5.9328 0.8863 1.9473 34 1 5.9327 -0.8937 1.9439 35 1 7.9889 0.6694 3.4026 36 1 7.9070 -1.0983 3.2111 37 1 10.1283 -1.0232 2.0364 38 1 10.2149 0.7194 2.3885 39 1 13.5057 -0.5626 3.4311 40 1 9.3748 1.1732 0.7656 41 1 7.8899 1.3171 -0.2053 42 1 4.1205 -2.1325 0.0012 43 1 1.6581 -2.1324 0.0012 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075886111.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:03 Heat of formation + Delta-G solvation = -142.633264 kcal Electronic energy + Delta-G solvation = -26943.408093 eV Core-core repulsion = 22765.758068 eV Total energy + Delta-G solvation = -4177.650024 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.151 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -51.27494 -48.76136 -48.67469 -40.42049 -39.01485 -35.55059 -34.71068 -32.18232 -31.76551 -31.18977 -29.43072 -27.14187 -25.57549 -24.79200 -23.56514 -22.97143 -21.91820 -21.36562 -19.74446 -19.64682 -18.53240 -18.04271 -17.11920 -16.79872 -16.55731 -16.44369 -16.16752 -15.96080 -15.65831 -15.46830 -15.11712 -15.05446 -14.84047 -14.52788 -14.30904 -14.29085 -14.19843 -14.00796 -13.62841 -13.39136 -13.25947 -13.10501 -12.95740 -12.89688 -12.79525 -12.51652 -12.30650 -11.99857 -11.88790 -11.74557 -11.47597 -11.32648 -11.21805 -10.51930 -9.78319 -9.39157 -9.29429 -8.18548 -6.27454 0.45029 0.54656 1.40233 1.40966 1.53511 1.79980 2.40145 2.62892 2.84269 2.89556 3.06333 3.15803 3.29517 3.89310 3.93614 4.06375 4.10870 4.20352 4.24409 4.26332 4.44781 4.50958 4.63201 4.65767 4.66751 4.71916 4.85995 4.86444 4.98054 5.00436 5.08299 5.14880 5.26459 5.34829 5.47144 5.55894 5.58899 5.74886 5.77536 5.79206 5.94339 6.04915 6.18581 6.29749 6.88127 7.40622 8.93529 Molecular weight = 315.15amu Principal moments of inertia in cm(-1) A = 0.019236 B = 0.003174 C = 0.002909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.266993 B = 8819.125785 C = 9621.768529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.102 4.102 3 C -0.130 4.130 4 C -0.122 4.122 5 C -0.093 4.093 6 C -0.067 4.067 7 C 0.027 3.973 8 N -0.520 5.520 9 C 0.041 3.959 10 C 0.040 3.960 11 C -0.538 4.538 12 H 0.056 0.944 13 C 0.004 3.996 14 N -0.929 5.929 15 Si 0.960 3.040 16 H -0.264 1.264 17 H -0.277 1.277 18 H -0.280 1.280 19 C 0.015 3.985 20 C 0.413 3.587 21 F -0.185 7.185 22 F -0.191 7.191 23 F -0.177 7.177 24 C -0.122 4.122 25 C -0.129 4.129 26 H 0.078 0.922 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.135 0.865 30 H 0.123 0.877 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.065 0.935 34 H 0.075 0.925 35 H 0.056 0.944 36 H 0.064 0.936 37 H -0.002 1.002 38 H -0.001 1.001 39 H 0.263 0.737 40 H 0.112 0.888 41 H 0.147 0.853 42 H 0.129 0.871 43 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.602 3.180 -9.196 23.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.102 4.102 3 C -0.148 4.148 4 C -0.140 4.140 5 C -0.094 4.094 6 C -0.105 4.105 7 C -0.100 4.100 8 N -0.241 5.241 9 C -0.085 4.085 10 C 0.003 3.997 11 C -0.577 4.577 12 H 0.074 0.926 13 C -0.194 4.194 14 N -0.569 5.569 15 Si 0.785 3.215 16 H -0.188 1.188 17 H -0.203 1.203 18 H -0.206 1.206 19 C -0.116 4.116 20 C 0.356 3.644 21 F -0.166 7.166 22 F -0.173 7.173 23 F -0.158 7.158 24 C -0.140 4.140 25 C -0.147 4.147 26 H 0.096 0.904 27 H 0.092 0.908 28 H 0.090 0.910 29 H 0.153 0.847 30 H 0.141 0.859 31 H 0.102 0.898 32 H 0.095 0.905 33 H 0.082 0.918 34 H 0.093 0.907 35 H 0.074 0.926 36 H 0.083 0.917 37 H 0.016 0.984 38 H 0.018 0.982 39 H 0.072 0.928 40 H 0.130 0.870 41 H 0.164 0.836 42 H 0.147 0.853 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -21.296 2.766 -9.487 23.477 hybrid contribution 0.631 0.717 1.497 1.776 sum -20.666 3.483 -7.990 22.428 Atomic orbital electron populations 1.20818 0.89570 1.03453 1.02992 1.20265 0.97438 0.93058 0.99408 1.21269 0.94049 0.98452 1.01041 1.21224 0.94728 0.97819 1.00260 1.19874 0.95308 0.93616 1.00585 1.20507 0.90618 1.03746 0.95592 1.22789 0.85634 1.03170 0.98393 1.62236 1.08627 1.31535 1.21713 1.22704 0.97085 1.01262 0.87465 1.18898 0.90020 0.95319 0.95504 1.21588 0.92219 1.48015 0.95831 0.92617 1.25862 0.97533 0.95211 1.00842 1.70085 1.03151 1.51087 1.32574 0.85475 0.78407 0.77833 0.79796 1.18836 1.20309 1.20563 1.23882 1.04974 0.83190 0.99568 1.22824 0.74732 0.86903 0.79933 1.93120 1.87833 1.95104 1.40583 1.93157 1.86740 1.53158 1.84230 1.93013 1.30217 1.96098 1.96509 1.21274 0.94711 0.97926 1.00062 1.21288 0.94079 0.98426 1.00870 0.90365 0.90829 0.90953 0.84749 0.85865 0.89840 0.90495 0.91777 0.90699 0.92631 0.91712 0.98366 0.98246 0.92825 0.87010 0.83561 0.85275 0.84521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.31 10.01 71.24 0.71 -0.60 16 2 C -0.10 -1.79 5.88 -19.87 -0.12 -1.91 16 3 C -0.13 -2.45 9.70 22.27 0.22 -2.23 16 4 C -0.12 -2.58 9.70 22.27 0.22 -2.36 16 5 C -0.09 -2.04 5.13 -19.86 -0.10 -2.14 16 6 C -0.07 -1.50 5.18 29.85 0.15 -1.34 16 7 C 0.03 0.73 4.43 86.30 0.38 1.12 16 8 N -0.52 -17.19 4.79 -896.23 -4.29 -21.48 16 9 C 0.04 1.70 4.34 86.30 0.37 2.07 16 10 C 0.04 2.05 4.31 29.85 0.13 2.18 16 11 C -0.54 -30.51 9.11 25.60 0.23 -30.27 16 12 H 0.06 3.07 7.74 -2.91 -0.02 3.05 16 13 C 0.00 0.20 5.46 84.66 0.46 0.67 16 14 N -0.93 -55.99 13.29 21.45 0.28 -55.70 16 15 Si 0.96 44.53 29.54 68.60 2.03 46.55 16 16 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 17 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 18 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 19 C 0.01 0.44 5.01 86.30 0.43 0.87 16 20 C 0.41 12.99 3.09 71.98 0.22 13.21 16 21 F -0.18 -7.18 12.97 44.97 0.58 -6.60 16 22 F -0.19 -5.90 17.32 44.97 0.78 -5.12 16 23 F -0.18 -5.03 13.75 44.97 0.62 -4.41 16 24 C -0.12 -2.50 9.70 22.27 0.22 -2.28 16 25 C -0.13 -2.36 9.70 22.27 0.22 -2.14 16 26 H 0.08 0.78 8.14 -2.38 -0.02 0.76 16 27 H 0.07 0.74 8.08 -2.39 -0.02 0.72 16 28 H 0.07 0.74 8.09 -2.39 -0.02 0.72 16 29 H 0.13 1.98 8.06 -2.91 -0.02 1.96 16 30 H 0.12 2.44 8.06 -2.91 -0.02 2.42 16 31 H 0.08 1.83 8.09 -2.39 -0.02 1.81 16 32 H 0.08 1.57 6.35 -2.39 -0.02 1.56 16 33 H 0.06 1.83 4.88 -2.39 -0.01 1.82 16 34 H 0.07 2.09 8.08 -2.39 -0.02 2.07 16 35 H 0.06 2.33 5.06 -2.39 -0.01 2.32 16 36 H 0.06 2.67 8.10 -2.39 -0.02 2.65 16 37 H 0.00 -0.12 8.14 -2.39 -0.02 -0.13 16 38 H 0.00 -0.04 6.20 -2.39 -0.01 -0.05 16 39 H 0.26 14.89 8.31 -92.70 -0.77 14.12 16 40 H 0.11 3.83 6.35 -2.39 -0.02 3.82 16 41 H 0.15 3.30 6.23 -2.39 -0.01 3.28 16 42 H 0.13 2.38 8.06 -2.91 -0.02 2.36 16 43 H 0.14 1.92 8.06 -2.91 -0.02 1.89 16 Total: -1.00 -64.40 353.82 4.76 -59.64 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: 1.01 Total: 12.28 kcal Atomic # 6 Polarization: -28.91 SS G_CDS: 3.75 Total: -25.16 kcal Atomic # 7 Polarization: -73.18 SS G_CDS: -4.01 Total: -77.19 kcal Atomic # 9 Polarization: -18.11 SS G_CDS: 1.98 Total: -16.12 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.55 kcal Total: -64.40 4.76 -59.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075886111.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.993 kcal (2) G-P(sol) polarization free energy of solvation -64.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds