Wall clock time and date at job start Tue Mar 31 2020 12:41:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 113.52791 * 2 1 4 4 C 1.56571 * 114.55282 * 134.20728 * 2 1 3 5 5 H 1.08994 * 114.55753 * 271.09109 * 4 2 1 6 6 N 1.46496 * 114.55772 * 44.84118 * 4 2 1 7 7 C 1.34781 * 119.99784 * 269.64595 * 6 4 2 8 8 O 1.21551 * 120.00081 * 0.02562 * 7 6 4 9 9 C 1.47879 * 119.99974 * 180.02562 * 7 6 4 10 10 C 1.39925 * 120.02621 * 0.02562 * 9 7 6 11 11 C 1.38331 * 120.35592 * 179.97438 * 10 9 7 12 12 C 1.37752 * 120.41595 * 359.71858 * 11 10 9 13 13 C 1.40752 * 120.03645 * 0.55668 * 12 11 10 14 14 C 1.41436 * 120.17852 * 179.72010 * 13 12 11 15 15 H 1.08003 * 120.00329 * 154.25705 * 14 13 12 16 16 C 1.39938 * 119.99920 * 334.26243 * 14 13 12 17 17 N 1.30827 * 119.99907 * 332.51967 * 16 14 13 18 18 Si 1.86804 * 120.00266 * 152.51937 * 16 14 13 19 19 H 1.48495 * 109.47082 * 179.97438 * 18 16 14 20 20 H 1.48502 * 109.46943 * 300.00262 * 18 16 14 21 21 H 1.48495 * 109.46840 * 59.99597 * 18 16 14 22 22 C 1.38996 * 120.02592 * 180.02562 * 9 7 6 23 23 C 1.50334 * 81.35873 * 157.96476 * 4 2 1 24 24 H 1.09002 * 114.28297 * 71.03713 * 23 4 2 25 25 C 1.52091 * 127.07179 * 226.76761 * 23 4 2 26 26 C 1.55779 * 101.84272 * 118.96533 * 25 23 4 27 27 O 1.46079 * 105.44717 * 353.08537 * 26 25 23 28 28 C 1.40076 * 103.53895 * 329.95557 * 27 26 25 29 29 H 1.08997 * 110.77336 * 293.94126 * 28 27 26 30 30 H 1.08998 * 109.47607 * 285.78991 * 1 2 3 31 31 H 1.08995 * 109.47435 * 45.79577 * 1 2 3 32 32 H 1.09011 * 109.47198 * 165.78993 * 1 2 3 33 33 H 1.08997 * 109.46880 * 207.12514 * 3 2 1 34 34 H 1.09000 * 109.47466 * 327.11869 * 3 2 1 35 35 H 1.08999 * 109.47474 * 87.11871 * 3 2 1 36 36 H 0.96999 * 120.00787 * 89.65116 * 6 4 2 37 37 H 1.07993 * 119.82265 * 359.95533 * 10 9 7 38 38 H 1.08000 * 119.78931 * 180.02562 * 11 10 9 39 39 H 1.07994 * 119.98518 * 180.30265 * 12 11 10 40 40 H 0.96999 * 119.99698 * 353.80346 * 17 16 14 41 41 H 1.08003 * 120.20024 * 359.97438 * 22 9 7 42 42 H 1.09000 * 111.49391 * 0.68969 * 25 23 4 43 43 H 1.08993 * 110.70430 * 236.89000 * 25 23 4 44 44 H 1.08993 * 110.25672 * 234.09159 * 26 25 23 45 45 H 1.09000 * 110.25070 * 112.07154 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1407 1.4028 0.0000 4 6 2.1806 -0.9930 1.0209 5 1 2.3517 -0.5753 2.0129 6 7 1.5742 -2.3264 1.0441 7 6 0.5513 -2.5869 1.8822 8 8 0.1316 -1.7155 2.6183 9 6 -0.0604 -3.9330 1.9061 10 6 0.4226 -4.9368 1.0593 11 6 -0.1442 -6.1985 1.0765 12 6 -1.1865 -6.4833 1.9309 13 6 -1.6896 -5.4848 2.7859 14 6 -2.7635 -5.7722 3.6602 15 1 -2.8858 -5.2039 4.5704 16 6 -3.6676 -6.7931 3.3459 17 7 -3.8836 -7.1137 2.0961 18 14 -4.5660 -7.6981 4.7109 19 1 -5.4602 -8.7252 4.1188 20 1 -3.5775 -8.3562 5.6026 21 1 -5.3748 -6.7318 5.4965 22 6 -1.1157 -4.2022 2.7698 23 6 3.3399 -0.8503 0.0744 24 1 3.8327 0.1212 0.1125 25 6 4.1919 -1.9680 -0.5068 26 6 3.9379 -1.8022 -2.0347 27 8 2.8947 -0.7859 -2.1477 28 6 2.1504 -0.9479 -0.9722 29 1 1.6451 -1.9137 -0.9646 30 1 -0.3634 0.2796 0.9888 31 1 -0.3634 0.7165 -0.7366 32 1 -0.3634 -0.9963 -0.2523 33 1 3.1243 1.3707 -0.4685 34 1 1.4945 2.0805 -0.5579 35 1 2.2384 1.7566 1.0263 36 1 1.9089 -3.0218 0.4565 37 1 1.2421 -4.7252 0.3886 38 1 0.2361 -6.9666 0.4193 39 1 -1.6206 -7.4721 1.9420 40 1 -3.4874 -6.5864 1.3847 41 1 -1.4915 -3.4306 3.4255 42 1 3.8571 -2.9462 -0.1615 43 1 5.2444 -1.8137 -0.2692 44 1 3.5957 -2.7434 -2.4648 45 1 4.8469 -1.4667 -2.5341 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078159639.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:20 Heat of formation + Delta-G solvation = 26.136080 kcal Electronic energy + Delta-G solvation = -26715.557738 eV Core-core repulsion = 23087.082842 eV Total energy + Delta-G solvation = -3628.474896 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.61584 -39.13165 -37.42065 -36.66114 -34.07295 -33.38217 -31.86764 -29.95618 -29.77509 -28.87913 -27.58319 -25.26425 -24.76818 -23.46780 -22.79708 -21.05547 -20.23243 -20.12190 -18.80180 -18.42460 -16.81008 -16.52893 -15.96681 -15.60755 -15.18454 -14.84775 -14.58703 -14.50568 -14.22408 -14.02253 -13.69495 -13.63885 -13.33843 -12.87929 -12.66516 -12.45723 -12.22535 -12.02925 -11.96868 -11.76418 -11.46249 -11.35336 -11.14260 -11.02721 -10.92552 -10.77274 -10.69915 -10.45824 -10.27507 -10.02030 -9.62514 -9.35927 -9.31222 -9.06267 -8.65893 -7.88839 -7.80310 -7.31045 -4.56260 1.95881 2.64506 2.89649 3.11716 3.16749 3.28519 3.32551 3.60578 3.95658 4.03330 4.18883 4.49072 4.53472 4.58269 4.76855 4.87062 5.02796 5.07956 5.26694 5.29695 5.34021 5.38552 5.51048 5.53882 5.64864 5.71847 5.73216 5.82856 5.86276 5.92897 5.94668 6.00777 6.05240 6.15754 6.39633 6.60925 6.62073 6.72236 6.74825 6.81529 7.11111 7.43718 7.51511 7.59516 7.69791 7.77896 8.03628 8.10834 8.58043 8.65134 8.73381 9.93325 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.024888 B = 0.003131 C = 0.002954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.778804 B = 8941.955862 C = 9474.868431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.062 4.062 3 C -0.127 4.127 4 C 0.159 3.841 5 H 0.103 0.897 6 N -0.716 5.716 7 C 0.568 3.432 8 O -0.539 6.539 9 C -0.107 4.107 10 C -0.228 4.228 11 C -0.088 4.088 12 C -0.202 4.202 13 C 0.087 3.913 14 C -0.519 4.519 15 H 0.079 0.921 16 C 0.041 3.959 17 N -0.790 5.790 18 Si 1.064 2.936 19 H -0.273 1.273 20 H -0.273 1.273 21 H -0.274 1.274 22 C -0.154 4.154 23 C -0.198 4.198 24 H 0.134 0.866 25 C -0.141 4.141 26 C 0.046 3.954 27 O -0.359 6.359 28 C 0.025 3.975 29 H 0.093 0.907 30 H 0.070 0.930 31 H 0.054 0.946 32 H 0.057 0.943 33 H 0.069 0.931 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.401 0.599 37 H 0.089 0.911 38 H 0.095 0.905 39 H 0.108 0.892 40 H 0.299 0.701 41 H 0.109 0.891 42 H 0.075 0.925 43 H 0.079 0.921 44 H 0.065 0.935 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.829 8.752 -5.839 16.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.064 4.064 3 C -0.184 4.184 4 C 0.052 3.948 5 H 0.121 0.879 6 N -0.371 5.371 7 C 0.359 3.641 8 O -0.417 6.417 9 C -0.110 4.110 10 C -0.249 4.249 11 C -0.106 4.106 12 C -0.222 4.222 13 C 0.084 3.916 14 C -0.546 4.546 15 H 0.098 0.902 16 C -0.182 4.182 17 N -0.412 5.412 18 Si 0.887 3.113 19 H -0.198 1.198 20 H -0.199 1.199 21 H -0.200 1.200 22 C -0.174 4.174 23 C -0.216 4.216 24 H 0.152 0.848 25 C -0.179 4.179 26 C -0.030 4.030 27 O -0.277 6.277 28 C -0.033 4.033 29 H 0.110 0.890 30 H 0.089 0.911 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.239 0.761 37 H 0.107 0.893 38 H 0.113 0.887 39 H 0.126 0.874 40 H 0.112 0.888 41 H 0.127 0.873 42 H 0.094 0.906 43 H 0.097 0.903 44 H 0.083 0.917 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 11.420 8.244 -5.260 15.035 hybrid contribution 1.399 0.652 -0.722 1.704 sum 12.819 8.896 -5.982 16.711 Atomic orbital electron populations 1.21698 0.92764 1.02096 1.02581 1.22306 0.96339 0.94706 0.93062 1.21746 1.00788 0.93469 1.02434 1.21244 0.91436 0.84309 0.97772 0.87914 1.45824 1.36593 1.11755 1.42945 1.18829 0.78370 0.88597 0.78332 1.90688 1.62023 1.47853 1.41113 1.19342 0.99206 0.91356 1.01076 1.20279 1.04695 0.94722 1.05155 1.20516 0.96512 0.95399 0.98186 1.21283 0.99902 0.98869 1.02132 1.17633 0.92461 0.90083 0.91395 1.20602 1.09505 1.17255 1.07244 0.90246 1.27060 0.95770 0.94910 1.00439 1.70470 1.33236 1.36311 1.01185 0.83648 0.76568 0.76762 0.74279 1.19801 1.19868 1.19977 1.21186 0.98509 0.96396 1.01330 1.24824 0.95026 1.01351 1.00403 0.84842 1.22358 1.01074 0.99163 0.95322 1.24163 0.91052 0.91933 0.95854 1.88476 1.42288 1.55992 1.40969 1.24468 0.96049 1.00178 0.82608 0.88995 0.91074 0.92708 0.92436 0.91233 0.91804 0.91611 0.76092 0.89330 0.88650 0.87426 0.88806 0.87283 0.90616 0.90263 0.91669 0.89267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.90 8.35 37.16 0.31 -1.59 16 2 C -0.06 -0.77 1.58 -166.48 -0.26 -1.03 16 3 C -0.13 -1.26 8.71 37.16 0.32 -0.94 16 4 C 0.16 2.06 3.94 -80.77 -0.32 1.74 16 5 H 0.10 1.40 8.02 -51.93 -0.42 0.99 16 6 N -0.72 -10.76 3.96 -67.84 -0.27 -11.03 16 7 C 0.57 11.09 6.98 -12.31 -0.09 11.01 16 8 O -0.54 -11.84 15.55 5.32 0.08 -11.75 16 9 C -0.11 -2.33 5.87 -105.04 -0.62 -2.94 16 10 C -0.23 -4.59 9.55 -38.92 -0.37 -4.96 16 11 C -0.09 -1.87 10.01 -39.72 -0.40 -2.27 16 12 C -0.20 -4.90 8.03 -38.81 -0.31 -5.21 16 13 C 0.09 2.24 5.27 -106.87 -0.56 1.68 16 14 C -0.52 -13.48 8.96 -37.73 -0.34 -13.82 16 15 H 0.08 2.03 7.98 -52.48 -0.42 1.61 16 16 C 0.04 1.01 4.88 -17.34 -0.08 0.92 16 17 N -0.79 -20.30 12.34 55.55 0.69 -19.62 16 18 Si 1.06 20.98 30.01 -169.99 -5.10 15.88 16 19 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 20 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 21 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 22 C -0.15 -3.79 9.34 -38.44 -0.36 -4.15 16 23 C -0.20 -2.07 4.27 -101.29 -0.43 -2.50 16 24 H 0.13 1.25 5.32 -51.93 -0.28 0.97 16 25 C -0.14 -1.27 6.64 -25.71 -0.17 -1.44 16 26 C 0.05 0.43 7.76 38.64 0.30 0.73 16 27 O -0.36 -4.52 11.46 -33.12 -0.38 -4.90 16 28 C 0.03 0.32 3.92 -38.81 -0.15 0.16 16 29 H 0.09 1.24 5.73 -51.93 -0.30 0.95 16 30 H 0.07 1.10 7.77 -51.93 -0.40 0.70 16 31 H 0.05 0.69 8.00 -51.93 -0.42 0.27 16 32 H 0.06 0.91 7.51 -51.92 -0.39 0.52 16 33 H 0.07 0.64 6.01 -51.93 -0.31 0.32 16 34 H 0.06 0.61 7.91 -51.93 -0.41 0.20 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.40 5.41 4.33 -40.82 -0.18 5.24 16 37 H 0.09 1.46 6.38 -52.49 -0.33 1.13 16 38 H 0.10 1.76 8.06 -52.49 -0.42 1.34 16 39 H 0.11 2.68 6.59 -52.49 -0.35 2.33 16 40 H 0.30 7.87 6.91 -40.82 -0.28 7.59 16 41 H 0.11 2.75 7.64 -52.48 -0.40 2.34 16 42 H 0.08 0.69 6.99 -51.93 -0.36 0.33 16 43 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 45 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 352.40 15.07 5.31 5.31 Total: -1.00 -28.32 352.40 -9.36 -37.68 By element: Atomic # 1 Polarization: 19.21 SS G_CDS: -6.15 Total: 13.05 kcal Atomic # 6 Polarization: -21.08 SS G_CDS: -3.53 Total: -24.61 kcal Atomic # 7 Polarization: -31.07 SS G_CDS: 0.42 Total: -30.65 kcal Atomic # 8 Polarization: -16.36 SS G_CDS: -0.30 Total: -16.65 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.10 Total: 15.88 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -28.32 -9.36 -37.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078159639.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.815 kcal (2) G-P(sol) polarization free energy of solvation -28.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.679 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds