Wall clock time and date at job start Tue Mar 31 2020 12:41:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 113.52791 * 2 1 4 4 C 1.56571 * 114.55282 * 134.20728 * 2 1 3 5 5 H 1.08994 * 114.55753 * 271.09109 * 4 2 1 6 6 N 1.46496 * 114.55772 * 44.84118 * 4 2 1 7 7 C 1.34781 * 119.99784 * 269.64595 * 6 4 2 8 8 O 1.21551 * 120.00081 * 0.02562 * 7 6 4 9 9 C 1.47879 * 119.99974 * 180.02562 * 7 6 4 10 10 C 1.39925 * 120.02621 * 0.02562 * 9 7 6 11 11 C 1.38331 * 120.35592 * 179.97438 * 10 9 7 12 12 C 1.37752 * 120.41595 * 359.71858 * 11 10 9 13 13 C 1.40752 * 120.03645 * 0.55668 * 12 11 10 14 14 C 1.41436 * 120.17852 * 179.72010 * 13 12 11 15 15 H 1.08003 * 120.00329 * 154.25705 * 14 13 12 16 16 C 1.39938 * 119.99920 * 334.26243 * 14 13 12 17 17 N 1.30827 * 119.99907 * 332.51967 * 16 14 13 18 18 Si 1.86804 * 120.00266 * 152.51937 * 16 14 13 19 19 H 1.48495 * 109.47082 * 179.97438 * 18 16 14 20 20 H 1.48502 * 109.46943 * 300.00262 * 18 16 14 21 21 H 1.48495 * 109.46840 * 59.99597 * 18 16 14 22 22 C 1.38996 * 120.02592 * 180.02562 * 9 7 6 23 23 C 1.50334 * 81.35873 * 157.96476 * 4 2 1 24 24 H 1.09002 * 114.28297 * 71.03713 * 23 4 2 25 25 C 1.52091 * 127.07179 * 226.76761 * 23 4 2 26 26 C 1.55779 * 101.84272 * 118.96533 * 25 23 4 27 27 O 1.46079 * 105.44717 * 353.08537 * 26 25 23 28 28 C 1.40076 * 103.53895 * 329.95557 * 27 26 25 29 29 H 1.08997 * 110.77336 * 293.94126 * 28 27 26 30 30 H 1.08998 * 109.47607 * 285.78991 * 1 2 3 31 31 H 1.08995 * 109.47435 * 45.79577 * 1 2 3 32 32 H 1.09011 * 109.47198 * 165.78993 * 1 2 3 33 33 H 1.08997 * 109.46880 * 207.12514 * 3 2 1 34 34 H 1.09000 * 109.47466 * 327.11869 * 3 2 1 35 35 H 1.08999 * 109.47474 * 87.11871 * 3 2 1 36 36 H 0.96999 * 120.00787 * 89.65116 * 6 4 2 37 37 H 1.07993 * 119.82265 * 359.95533 * 10 9 7 38 38 H 1.08000 * 119.78931 * 180.02562 * 11 10 9 39 39 H 1.07994 * 119.98518 * 180.30265 * 12 11 10 40 40 H 0.96999 * 119.99698 * 353.80346 * 17 16 14 41 41 H 1.08003 * 120.20024 * 359.97438 * 22 9 7 42 42 H 1.09000 * 111.49391 * 0.68969 * 25 23 4 43 43 H 1.08993 * 110.70430 * 236.89000 * 25 23 4 44 44 H 1.08993 * 110.25672 * 234.09159 * 26 25 23 45 45 H 1.09000 * 110.25070 * 112.07154 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1407 1.4028 0.0000 4 6 2.1806 -0.9930 1.0209 5 1 2.3517 -0.5753 2.0129 6 7 1.5742 -2.3264 1.0441 7 6 0.5513 -2.5869 1.8822 8 8 0.1316 -1.7155 2.6183 9 6 -0.0604 -3.9330 1.9061 10 6 0.4226 -4.9368 1.0593 11 6 -0.1442 -6.1985 1.0765 12 6 -1.1865 -6.4833 1.9309 13 6 -1.6896 -5.4848 2.7859 14 6 -2.7635 -5.7722 3.6602 15 1 -2.8858 -5.2039 4.5704 16 6 -3.6676 -6.7931 3.3459 17 7 -3.8836 -7.1137 2.0961 18 14 -4.5660 -7.6981 4.7109 19 1 -5.4602 -8.7252 4.1188 20 1 -3.5775 -8.3562 5.6026 21 1 -5.3748 -6.7318 5.4965 22 6 -1.1157 -4.2022 2.7698 23 6 3.3399 -0.8503 0.0744 24 1 3.8327 0.1212 0.1125 25 6 4.1919 -1.9680 -0.5068 26 6 3.9379 -1.8022 -2.0347 27 8 2.8947 -0.7859 -2.1477 28 6 2.1504 -0.9479 -0.9722 29 1 1.6451 -1.9137 -0.9646 30 1 -0.3634 0.2796 0.9888 31 1 -0.3634 0.7165 -0.7366 32 1 -0.3634 -0.9963 -0.2523 33 1 3.1243 1.3707 -0.4685 34 1 1.4945 2.0805 -0.5579 35 1 2.2384 1.7566 1.0263 36 1 1.9089 -3.0218 0.4565 37 1 1.2421 -4.7252 0.3886 38 1 0.2361 -6.9666 0.4193 39 1 -1.6206 -7.4721 1.9420 40 1 -3.4874 -6.5864 1.3847 41 1 -1.4915 -3.4306 3.4255 42 1 3.8571 -2.9462 -0.1615 43 1 5.2444 -1.8137 -0.2692 44 1 3.5957 -2.7434 -2.4648 45 1 4.8469 -1.4667 -2.5341 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078159639.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:19 Heat of formation + Delta-G solvation = 10.522237 kcal Electronic energy + Delta-G solvation = -26716.234805 eV Core-core repulsion = 23087.082842 eV Total energy + Delta-G solvation = -3629.151963 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.59234 -40.69549 -39.07641 -37.75075 -35.87969 -34.73802 -32.78778 -31.78561 -31.44796 -29.90733 -28.52799 -27.10027 -25.90277 -24.36498 -24.29461 -22.84988 -21.77654 -21.07289 -20.12562 -19.85864 -18.30707 -17.64500 -17.05841 -16.76267 -16.57558 -16.27871 -16.09340 -15.90092 -15.44369 -15.40552 -15.21216 -14.78841 -14.45691 -14.35710 -14.22580 -13.85285 -13.69497 -13.18908 -13.11998 -12.82976 -12.75747 -12.69251 -12.42463 -12.32867 -12.14737 -12.04868 -11.94559 -11.81382 -11.72691 -11.42764 -11.05031 -10.91345 -10.79684 -10.37255 -9.86781 -9.73051 -9.60013 -9.24110 -6.53829 0.18602 0.82098 1.50068 1.56773 1.79648 1.94940 1.98896 2.05218 2.31171 2.64556 3.08040 3.19304 3.46226 3.65266 3.80092 3.84255 3.93668 4.07958 4.12414 4.22637 4.31621 4.35496 4.40716 4.46599 4.59970 4.69036 4.71726 4.72604 4.80446 4.87060 4.89242 4.92245 4.97757 5.01533 5.07770 5.14445 5.22871 5.24483 5.25668 5.44760 5.61342 5.63086 5.69972 5.78269 5.89204 6.10428 6.20106 6.44286 6.67740 6.81227 7.14629 7.97490 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.024888 B = 0.003131 C = 0.002954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.778804 B = 8941.955862 C = 9474.868431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.063 4.063 3 C -0.123 4.123 4 C 0.144 3.856 5 H 0.097 0.903 6 N -0.695 5.695 7 C 0.569 3.431 8 O -0.570 6.570 9 C -0.111 4.111 10 C -0.203 4.203 11 C -0.087 4.087 12 C -0.213 4.213 13 C 0.064 3.936 14 C -0.562 4.562 15 H 0.067 0.933 16 C 0.010 3.990 17 N -0.809 5.809 18 Si 1.115 2.885 19 H -0.267 1.267 20 H -0.262 1.262 21 H -0.262 1.262 22 C -0.185 4.185 23 C -0.173 4.173 24 H 0.152 0.848 25 C -0.140 4.140 26 C 0.042 3.958 27 O -0.377 6.377 28 C 0.016 3.984 29 H 0.078 0.922 30 H 0.050 0.950 31 H 0.067 0.933 32 H 0.033 0.967 33 H 0.084 0.916 34 H 0.066 0.934 35 H 0.074 0.926 36 H 0.411 0.589 37 H 0.136 0.864 38 H 0.134 0.866 39 H 0.096 0.904 40 H 0.283 0.717 41 H 0.087 0.913 42 H 0.075 0.925 43 H 0.102 0.898 44 H 0.070 0.930 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.842 8.948 -7.283 19.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.064 4.064 3 C -0.180 4.180 4 C 0.039 3.961 5 H 0.115 0.885 6 N -0.348 5.348 7 C 0.359 3.641 8 O -0.450 6.450 9 C -0.114 4.114 10 C -0.223 4.223 11 C -0.105 4.105 12 C -0.233 4.233 13 C 0.062 3.938 14 C -0.590 4.590 15 H 0.085 0.915 16 C -0.207 4.207 17 N -0.431 5.431 18 Si 0.932 3.068 19 H -0.192 1.192 20 H -0.187 1.187 21 H -0.186 1.186 22 C -0.206 4.206 23 C -0.191 4.191 24 H 0.170 0.830 25 C -0.177 4.177 26 C -0.034 4.034 27 O -0.296 6.296 28 C -0.043 4.043 29 H 0.095 0.905 30 H 0.069 0.931 31 H 0.086 0.914 32 H 0.052 0.948 33 H 0.102 0.898 34 H 0.085 0.915 35 H 0.093 0.907 36 H 0.251 0.749 37 H 0.154 0.846 38 H 0.152 0.848 39 H 0.114 0.886 40 H 0.095 0.905 41 H 0.105 0.895 42 H 0.094 0.906 43 H 0.120 0.880 44 H 0.088 0.912 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 14.484 8.454 -6.744 18.076 hybrid contribution 0.648 0.716 -0.430 1.057 sum 15.132 9.170 -7.175 19.093 Atomic orbital electron populations 1.21654 0.94661 1.00915 1.01703 1.22404 0.94909 0.96202 0.92932 1.21758 1.01313 0.91664 1.03306 1.21417 0.93254 0.83165 0.98276 0.88504 1.45570 1.34831 1.13160 1.41269 1.18505 0.79275 0.87410 0.78940 1.90676 1.63238 1.48375 1.42702 1.19661 0.98325 0.93248 1.00200 1.20788 1.04364 0.93389 1.03718 1.20940 0.95176 0.96858 0.97533 1.21328 1.01002 0.98082 1.02889 1.17898 0.92943 0.90862 0.92108 1.20760 1.11220 1.19265 1.07705 0.91460 1.28396 0.95621 0.94934 1.01763 1.70588 1.34317 1.36853 1.01379 0.83037 0.75915 0.76034 0.71858 1.19170 1.18667 1.18626 1.21136 1.00660 0.95841 1.02948 1.24816 0.94187 1.02963 0.97181 0.83030 1.22417 1.02111 0.98400 0.94784 1.24373 0.91039 0.91678 0.96269 1.88464 1.43035 1.57050 1.41036 1.24302 0.97056 0.99217 0.83691 0.90470 0.93065 0.91361 0.94814 0.89782 0.91453 0.90729 0.74932 0.84611 0.84845 0.88602 0.90484 0.89469 0.90608 0.87953 0.91161 0.87110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.75 8.35 71.98 0.60 -3.15 16 2 C -0.06 -1.46 1.58 -59.94 -0.09 -1.55 16 3 C -0.12 -2.13 8.71 71.98 0.63 -1.51 16 4 C 0.14 3.48 3.94 36.68 0.14 3.63 16 5 H 0.10 2.51 8.02 -2.39 -0.02 2.49 16 6 N -0.69 -19.74 3.96 -486.81 -1.93 -21.67 16 7 C 0.57 22.24 6.98 86.80 0.61 22.84 16 8 O -0.57 -25.78 15.55 -3.87 -0.06 -25.84 16 9 C -0.11 -4.87 5.87 -20.13 -0.12 -4.99 16 10 C -0.20 -7.68 9.55 22.70 0.22 -7.47 16 11 C -0.09 -3.55 10.01 22.18 0.22 -3.32 16 12 C -0.21 -10.52 8.03 22.77 0.18 -10.34 16 13 C 0.06 3.48 5.27 -21.32 -0.11 3.36 16 14 C -0.56 -30.94 8.96 23.47 0.21 -30.73 16 15 H 0.07 3.71 7.98 -2.91 -0.02 3.68 16 16 C 0.01 0.50 4.88 85.25 0.42 0.92 16 17 N -0.81 -43.14 12.34 21.82 0.27 -42.87 16 18 Si 1.11 43.18 30.01 68.60 2.06 45.23 16 19 H -0.27 -10.01 7.11 99.48 0.71 -9.30 16 20 H -0.26 -9.59 7.11 99.48 0.71 -8.88 16 21 H -0.26 -9.50 7.11 99.48 0.71 -8.79 16 22 C -0.19 -9.61 9.34 23.01 0.21 -9.40 16 23 C -0.17 -3.02 4.27 -17.71 -0.08 -3.10 16 24 H 0.15 2.17 5.32 -2.39 -0.01 2.16 16 25 C -0.14 -1.90 6.64 31.25 0.21 -1.69 16 26 C 0.04 0.61 7.76 72.94 0.57 1.18 16 27 O -0.38 -8.33 11.46 -141.41 -1.62 -9.96 16 28 C 0.02 0.36 3.92 22.77 0.09 0.45 16 29 H 0.08 1.93 5.73 -2.39 -0.01 1.92 16 30 H 0.05 1.64 7.77 -2.39 -0.02 1.62 16 31 H 0.07 1.69 8.00 -2.39 -0.02 1.67 16 32 H 0.03 1.08 7.51 -2.38 -0.02 1.07 16 33 H 0.08 1.22 6.01 -2.39 -0.01 1.21 16 34 H 0.07 1.13 7.91 -2.39 -0.02 1.12 16 35 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.41 9.87 4.33 -92.71 -0.40 9.47 16 37 H 0.14 3.84 6.38 -2.91 -0.02 3.83 16 38 H 0.13 4.43 8.06 -2.91 -0.02 4.41 16 39 H 0.10 4.91 6.59 -2.91 -0.02 4.89 16 40 H 0.28 15.66 6.91 -92.71 -0.64 15.02 16 41 H 0.09 4.77 7.64 -2.91 -0.02 4.75 16 42 H 0.08 1.05 6.99 -2.39 -0.02 1.03 16 43 H 0.10 0.98 8.14 -2.39 -0.02 0.97 16 44 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 45 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -65.80 352.40 3.37 -62.43 By element: Atomic # 1 Polarization: 36.80 SS G_CDS: 0.74 Total: 37.54 kcal Atomic # 6 Polarization: -48.78 SS G_CDS: 3.90 Total: -44.87 kcal Atomic # 7 Polarization: -62.88 SS G_CDS: -1.66 Total: -64.54 kcal Atomic # 8 Polarization: -34.11 SS G_CDS: -1.68 Total: -35.79 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.06 Total: 45.23 kcal Total: -65.80 3.37 -62.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078159639.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.953 kcal (2) G-P(sol) polarization free energy of solvation -65.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.431 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds