Wall clock time and date at job start Tue Mar 31 2020 12:41:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52996 * 112.84166 * 2 1 4 4 C 1.53655 * 113.53692 * 131.00635 * 2 1 3 5 5 H 1.09001 * 113.53285 * 335.36394 * 4 2 1 6 6 N 1.46504 * 113.52953 * 204.79331 * 4 2 1 7 7 C 1.34780 * 119.99877 * 155.00202 * 6 4 2 8 8 O 1.21550 * 119.99728 * 359.97438 * 7 6 4 9 9 C 1.47877 * 120.00044 * 179.97438 * 7 6 4 10 10 C 1.39916 * 120.02666 * 359.97438 * 9 7 6 11 11 C 1.38333 * 120.36267 * 179.97438 * 10 9 7 12 12 C 1.37756 * 120.40659 * 359.97438 * 11 10 9 13 13 C 1.40752 * 120.04347 * 0.02806 * 12 11 10 14 14 C 1.41434 * 120.17550 * 179.97438 * 13 12 11 15 15 H 1.08000 * 119.99797 * 154.77399 * 14 13 12 16 16 C 1.39933 * 120.00084 * 334.76776 * 14 13 12 17 17 N 1.30823 * 120.00308 * 333.92446 * 16 14 13 18 18 Si 1.86803 * 119.99549 * 154.20167 * 16 14 13 19 19 H 1.48502 * 109.47039 * 179.72783 * 18 16 14 20 20 H 1.48502 * 109.47109 * 299.72187 * 18 16 14 21 21 H 1.48493 * 109.47477 * 59.72440 * 18 16 14 22 22 C 1.38997 * 120.02636 * 180.29278 * 9 7 6 23 23 C 1.53737 * 87.57729 * 90.11298 * 4 2 1 24 24 H 1.08998 * 116.36946 * 265.49573 * 23 4 2 25 25 C 1.54495 * 112.85884 * 128.22102 * 23 4 2 26 26 C 1.54462 * 104.13308 * 267.07122 * 25 23 4 27 27 O 1.44389 * 104.80438 * 24.13047 * 26 25 23 28 28 C 1.44247 * 105.40309 * 319.42143 * 27 26 25 29 29 H 1.09002 * 115.52502 * 270.86422 * 28 27 26 30 30 H 1.09004 * 109.47498 * 288.99540 * 1 2 3 31 31 H 1.09000 * 109.47554 * 48.99645 * 1 2 3 32 32 H 1.09000 * 109.47485 * 168.99970 * 1 2 3 33 33 H 1.09007 * 109.47175 * 191.00879 * 3 2 1 34 34 H 1.09006 * 109.47016 * 311.00223 * 3 2 1 35 35 H 1.08994 * 109.47759 * 71.00424 * 3 2 1 36 36 H 0.96995 * 120.00211 * 334.99193 * 6 4 2 37 37 H 1.08000 * 119.82126 * 0.02562 * 10 9 7 38 38 H 1.07997 * 119.79728 * 179.97438 * 11 10 9 39 39 H 1.08002 * 119.97692 * 179.97438 * 12 11 10 40 40 H 0.97002 * 120.00161 * 354.59463 * 17 16 14 41 41 H 1.08004 * 120.20535 * 0.02672 * 22 9 7 42 42 H 1.08996 * 110.50187 * 25.73187 * 25 23 4 43 43 H 1.08998 * 110.49952 * 148.41057 * 25 23 4 44 44 H 1.09000 * 110.37095 * 142.96528 * 26 25 23 45 45 H 1.09004 * 110.36881 * 265.18509 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1238 1.4100 0.0000 4 6 2.1435 -0.9243 1.0631 5 1 1.4845 -1.1098 1.9113 6 7 3.4951 -0.5316 1.4698 7 6 3.9629 -0.8848 2.6835 8 8 3.2633 -1.5287 3.4406 9 6 5.3273 -0.4888 3.0939 10 6 6.1333 0.2520 2.2225 11 6 7.4105 0.6265 2.5995 12 6 7.9035 0.2751 3.8369 13 6 7.1074 -0.4700 4.7269 14 6 7.6110 -0.8328 5.9978 15 1 6.9300 -1.0251 6.8137 16 6 8.9915 -0.9426 6.1981 17 7 9.7788 -1.2192 5.1905 18 14 9.7095 -0.7020 7.9058 19 1 11.1834 -0.8758 7.8521 20 1 9.3897 0.6653 8.3891 21 1 9.1264 -1.7040 8.8337 22 6 5.8126 -0.8580 4.3430 23 6 2.1204 -2.0435 0.0094 24 1 1.2511 -2.7011 0.0206 25 6 3.4882 -2.7432 -0.1532 26 6 4.1718 -1.9722 -1.3039 27 8 3.5434 -0.6722 -1.3014 28 6 2.1433 -0.9239 -1.0625 29 1 1.5377 -1.0923 -1.9531 30 1 -0.3634 0.3345 0.9717 31 1 -0.3634 0.6742 -0.7755 32 1 -0.3634 -1.0088 -0.1961 33 1 3.1946 1.3532 -0.1963 34 1 1.6435 2.0066 -0.7756 35 1 1.9567 1.8747 0.9716 36 1 4.0532 -0.0175 0.8657 37 1 5.7559 0.5337 1.2506 38 1 8.0249 1.1979 1.9195 39 1 8.9018 0.5708 4.1239 40 1 9.4002 -1.4253 4.3216 41 1 5.1961 -1.4346 5.0167 42 1 4.0720 -2.6577 0.7632 43 1 3.3516 -3.7902 -0.4236 44 1 5.2410 -1.8772 -1.1143 45 1 3.9991 -2.4773 -2.2542 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078159641.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:23 Heat of formation + Delta-G solvation = -60.942196 kcal Electronic energy + Delta-G solvation = -26932.553354 eV Core-core repulsion = 23300.302460 eV Total energy + Delta-G solvation = -3632.250894 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.71095 -40.57645 -39.02066 -37.15610 -35.87600 -34.57790 -32.96094 -31.79675 -31.38957 -29.86178 -28.21713 -27.13688 -26.20724 -24.10612 -24.00081 -22.85082 -21.80130 -21.26932 -20.27788 -19.54390 -18.11697 -17.54487 -17.03221 -16.92651 -16.66661 -16.23659 -15.93770 -15.87299 -15.74378 -15.37055 -14.82319 -14.51489 -14.34046 -14.27130 -14.12098 -13.83031 -13.73706 -13.23714 -13.10545 -13.04395 -12.84241 -12.76221 -12.42678 -12.16985 -12.13236 -11.98941 -11.94516 -11.93376 -11.47934 -11.41793 -11.09376 -11.03487 -10.89458 -10.50151 -10.09857 -9.74033 -9.62077 -9.23414 -6.54663 0.18680 0.81427 1.49906 1.57240 1.79763 1.98730 2.11055 2.31392 2.65932 2.66898 3.15612 3.43923 3.51887 3.62421 3.85916 3.91066 4.08103 4.15974 4.20405 4.22466 4.34085 4.36509 4.39684 4.52353 4.64634 4.70897 4.77523 4.78961 4.84041 4.89329 4.91725 4.97797 4.98608 5.08268 5.09437 5.15360 5.23838 5.35333 5.39881 5.49912 5.61384 5.64526 5.69821 5.78458 5.90254 6.11044 6.20126 6.55860 6.67451 6.81319 7.20178 7.98467 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.025020 B = 0.003231 C = 0.003153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.826501 B = 8665.046300 C = 8878.862924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.077 4.077 3 C -0.135 4.135 4 C 0.119 3.881 5 H 0.082 0.918 6 N -0.683 5.683 7 C 0.563 3.437 8 O -0.587 6.587 9 C -0.110 4.110 10 C -0.200 4.200 11 C -0.086 4.086 12 C -0.212 4.212 13 C 0.065 3.935 14 C -0.560 4.560 15 H 0.067 0.933 16 C 0.008 3.992 17 N -0.811 5.811 18 Si 1.117 2.883 19 H -0.267 1.267 20 H -0.262 1.262 21 H -0.262 1.262 22 C -0.187 4.187 23 C -0.150 4.150 24 H 0.136 0.864 25 C -0.150 4.150 26 C 0.051 3.949 27 O -0.374 6.374 28 C 0.065 3.935 29 H 0.120 0.880 30 H 0.061 0.939 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.053 0.947 34 H 0.076 0.924 35 H 0.047 0.953 36 H 0.412 0.588 37 H 0.131 0.869 38 H 0.133 0.867 39 H 0.098 0.902 40 H 0.284 0.716 41 H 0.086 0.914 42 H 0.044 0.956 43 H 0.088 0.912 44 H 0.087 0.913 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.477 1.668 -15.342 20.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.078 4.078 3 C -0.192 4.192 4 C 0.013 3.987 5 H 0.101 0.899 6 N -0.335 5.335 7 C 0.353 3.647 8 O -0.469 6.469 9 C -0.114 4.114 10 C -0.219 4.219 11 C -0.104 4.104 12 C -0.232 4.232 13 C 0.062 3.938 14 C -0.588 4.588 15 H 0.085 0.915 16 C -0.208 4.208 17 N -0.434 5.434 18 Si 0.933 3.067 19 H -0.191 1.191 20 H -0.187 1.187 21 H -0.186 1.186 22 C -0.207 4.207 23 C -0.170 4.170 24 H 0.154 0.846 25 C -0.188 4.188 26 C -0.025 4.025 27 O -0.293 6.293 28 C 0.007 3.993 29 H 0.138 0.862 30 H 0.080 0.920 31 H 0.102 0.898 32 H 0.093 0.907 33 H 0.072 0.928 34 H 0.095 0.905 35 H 0.066 0.934 36 H 0.253 0.747 37 H 0.148 0.852 38 H 0.151 0.849 39 H 0.117 0.883 40 H 0.096 0.904 41 H 0.104 0.896 42 H 0.063 0.937 43 H 0.107 0.893 44 H 0.105 0.895 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -12.403 1.476 -14.094 18.832 hybrid contribution -1.022 -0.359 -0.632 1.254 sum -13.425 1.117 -14.726 19.958 Atomic orbital electron populations 1.21548 0.89512 1.03700 1.03185 1.22261 0.97480 0.94814 0.93206 1.21589 1.01009 0.94781 1.01850 1.22129 0.83572 0.96255 0.96710 0.89936 1.45523 1.16317 1.55847 1.15805 1.18610 0.86477 0.78094 0.81554 1.90652 1.59997 1.42004 1.54225 1.19664 0.93461 1.02242 0.95985 1.20752 0.95188 1.06269 0.99715 1.20932 0.95433 0.98552 0.95530 1.21345 1.00882 1.04332 0.96656 1.17899 0.91912 0.90510 0.93486 1.20767 0.95778 1.45440 0.96833 0.91489 1.28421 0.93790 0.89778 1.08845 1.70588 1.40337 1.28382 1.04100 0.83013 0.76259 0.78848 0.68552 1.19079 1.18699 1.18632 1.21131 0.97824 1.05434 0.96351 1.24576 0.99198 0.96336 0.96883 0.84575 1.22822 0.95967 1.00961 0.99022 1.23521 0.97967 0.83074 0.97956 1.88945 1.19426 1.27766 1.93126 1.24291 0.83784 0.94718 0.96489 0.86239 0.92008 0.89848 0.90666 0.92774 0.90478 0.93365 0.74748 0.85154 0.84875 0.88344 0.90367 0.89619 0.93680 0.89291 0.89516 0.89866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.57 9.08 71.98 0.65 -0.91 16 2 C -0.08 -1.41 1.31 -51.77 -0.07 -1.48 16 3 C -0.13 -2.66 8.46 71.98 0.61 -2.05 16 4 C 0.12 3.08 3.66 45.46 0.17 3.25 16 5 H 0.08 2.47 7.41 -2.39 -0.02 2.45 16 6 N -0.68 -21.60 3.10 -443.13 -1.37 -22.98 16 7 C 0.56 23.74 7.05 86.80 0.61 24.35 16 8 O -0.59 -28.55 15.93 -3.87 -0.06 -28.61 16 9 C -0.11 -5.11 5.87 -20.14 -0.12 -5.22 16 10 C -0.20 -8.10 9.55 22.70 0.22 -7.88 16 11 C -0.09 -3.68 10.01 22.18 0.22 -3.46 16 12 C -0.21 -10.75 7.96 22.77 0.18 -10.57 16 13 C 0.06 3.56 5.30 -21.32 -0.11 3.45 16 14 C -0.56 -31.39 8.98 23.47 0.21 -31.18 16 15 H 0.07 3.75 7.96 -2.91 -0.02 3.73 16 16 C 0.01 0.42 4.92 85.25 0.42 0.84 16 17 N -0.81 -43.72 12.32 21.82 0.27 -43.45 16 18 Si 1.12 43.73 30.00 68.60 2.06 45.79 16 19 H -0.27 -10.05 7.11 99.48 0.71 -9.34 16 20 H -0.26 -9.72 7.11 99.48 0.71 -9.01 16 21 H -0.26 -9.61 7.11 99.48 0.71 -8.90 16 22 C -0.19 -10.04 9.34 23.01 0.21 -9.82 16 23 C -0.15 -3.03 4.67 -9.35 -0.04 -3.08 16 24 H 0.14 2.13 8.04 -2.39 -0.02 2.11 16 25 C -0.15 -3.41 6.26 31.60 0.20 -3.21 16 26 C 0.05 1.01 7.61 72.48 0.55 1.57 16 27 O -0.37 -8.07 8.50 -148.98 -1.27 -9.33 16 28 C 0.06 1.12 4.72 31.48 0.15 1.27 16 29 H 0.12 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 31 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.07 0.77 7.65 -2.39 -0.02 0.75 16 33 H 0.05 1.21 5.75 -2.38 -0.01 1.19 16 34 H 0.08 1.21 8.14 -2.38 -0.02 1.19 16 35 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.41 12.11 3.90 -92.71 -0.36 11.75 16 37 H 0.13 4.29 6.38 -2.91 -0.02 4.27 16 38 H 0.13 4.68 8.06 -2.91 -0.02 4.65 16 39 H 0.10 5.14 6.48 -2.91 -0.02 5.12 16 40 H 0.28 15.85 6.71 -92.71 -0.62 15.23 16 41 H 0.09 4.85 7.64 -2.91 -0.02 4.83 16 42 H 0.04 1.39 6.46 -2.39 -0.02 1.38 16 43 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 44 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 45 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 Total: -1.00 -66.95 353.49 4.48 -62.47 By element: Atomic # 1 Polarization: 39.46 SS G_CDS: 0.79 Total: 40.25 kcal Atomic # 6 Polarization: -48.21 SS G_CDS: 4.06 Total: -44.15 kcal Atomic # 7 Polarization: -65.32 SS G_CDS: -1.10 Total: -66.42 kcal Atomic # 8 Polarization: -36.62 SS G_CDS: -1.33 Total: -37.94 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.06 Total: 45.79 kcal Total: -66.95 4.48 -62.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078159641.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.530 kcal (2) G-P(sol) polarization free energy of solvation -66.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds