Wall clock time and date at job start Tue Mar 31 2020 12:12:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38288 * 119.92386 * 2 1 4 4 C 1.38104 * 120.06982 * 180.25701 * 3 2 1 5 5 C 1.38892 * 119.92525 * 359.51546 * 4 3 2 6 6 N 1.39857 * 120.07063 * 180.27447 * 5 4 3 7 7 C 1.46495 * 119.99995 * 172.56383 * 6 5 4 8 8 C 1.50695 * 109.47130 * 94.03438 * 7 6 5 9 9 H 1.07999 * 120.00147 * 0.02562 * 8 7 6 10 10 C 1.37877 * 120.00116 * 179.97438 * 8 7 6 11 11 N 1.31514 * 120.00024 * 0.02562 * 10 8 7 12 12 Si 1.86807 * 119.99949 * 179.97438 * 10 8 7 13 13 H 1.48504 * 109.46875 * 90.00722 * 12 10 8 14 14 H 1.48502 * 109.46929 * 209.99977 * 12 10 8 15 15 H 1.48492 * 109.47343 * 330.00702 * 12 10 8 16 16 C 1.34772 * 119.99618 * 352.56646 * 6 5 4 17 17 O 1.21747 * 120.00733 * 3.93798 * 16 6 5 18 18 C 1.41767 * 119.99834 * 183.93724 * 16 6 5 19 19 C 1.33480 * 118.78819 * 278.35334 * 18 16 6 20 20 C 1.50702 * 118.46231 * 0.41177 * 19 18 16 21 21 O 1.34353 * 123.07431 * 180.38723 * 19 18 16 22 22 C 1.45355 * 117.48157 * 343.69482 * 21 19 18 23 23 C 1.53479 * 108.26649 * 47.48030 * 22 21 19 24 24 C 1.50413 * 118.78931 * 98.08152 * 18 16 6 25 25 C 1.38883 * 119.85975 * 0.25303 * 5 4 3 26 26 C 1.38115 * 119.92535 * 0.02562 * 25 5 4 27 27 H 1.09001 * 109.46918 * 270.20185 * 1 2 3 28 28 H 1.08999 * 109.47217 * 30.20912 * 1 2 3 29 29 H 1.09004 * 109.47177 * 150.20842 * 1 2 3 30 30 H 1.07999 * 119.96219 * 0.05020 * 3 2 1 31 31 H 1.07995 * 120.03983 * 179.79564 * 4 3 2 32 32 H 1.08999 * 109.47444 * 214.03785 * 7 6 5 33 33 H 1.09007 * 109.47383 * 334.03551 * 7 6 5 34 34 H 0.97006 * 119.99818 * 179.97438 * 11 10 8 35 35 H 1.09003 * 109.47330 * 94.66297 * 20 19 18 36 36 H 1.09005 * 109.46946 * 214.66558 * 20 19 18 37 37 H 1.09007 * 109.46999 * 334.66347 * 20 19 18 38 38 H 1.09006 * 109.70432 * 167.17112 * 22 21 19 39 39 H 1.08994 * 109.70347 * 287.73876 * 22 21 19 40 40 H 1.09001 * 109.70352 * 56.98114 * 23 22 21 41 41 H 1.09000 * 109.70495 * 177.55793 * 23 22 21 42 42 H 1.09002 * 109.45774 * 282.36588 * 24 18 16 43 43 H 1.09001 * 109.45622 * 42.30364 * 24 18 16 44 44 H 1.07999 * 120.04097 * 180.02562 * 25 5 4 45 45 H 1.07998 * 119.96222 * 179.97438 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1985 0.0000 4 6 3.5779 1.2021 -0.0054 5 6 4.2739 0.0001 -0.0006 6 7 5.6724 0.0002 -0.0002 7 6 6.4049 -1.2572 0.1690 8 6 6.7430 -1.8276 -1.1842 9 1 6.4427 -1.3055 -2.0807 10 6 7.4367 -3.0155 -1.2779 11 7 7.8028 -3.6510 -0.1863 12 14 7.8552 -3.7229 -2.9555 13 1 9.1754 -3.2046 -3.3958 14 1 7.9090 -5.2044 -2.8685 15 1 6.8141 -3.3220 -3.9355 16 6 6.3462 1.1570 -0.1554 17 8 5.7397 2.2104 -0.2241 18 6 7.7614 1.1473 -0.2388 19 6 8.4714 1.0882 0.8900 20 6 7.7316 1.0249 2.2014 21 8 9.8148 1.0819 0.9117 22 6 10.5043 0.7789 -0.3315 23 6 9.8743 1.6217 -1.4488 24 6 8.4074 1.1978 -1.5962 25 6 3.5780 -1.2018 0.0043 26 6 2.1969 -1.1984 0.0038 27 1 -0.3633 0.0036 1.0277 28 1 -0.3633 0.8881 -0.5171 29 1 -0.3634 -0.8919 -0.5106 30 1 1.6550 2.1328 0.0008 31 1 4.1161 2.1383 -0.0087 32 1 7.3239 -1.0705 0.7246 33 1 5.7863 -1.9671 0.7182 34 1 8.2905 -4.4870 -0.2523 35 1 7.6224 -0.0156 2.5072 36 1 8.2917 1.5702 2.9611 37 1 6.7455 1.4746 2.0843 38 1 11.5614 1.0271 -0.2354 39 1 10.3953 -0.2805 -0.5634 40 1 9.9315 2.6786 -1.1886 41 1 10.4032 1.4446 -2.3854 42 1 8.3553 0.2127 -2.0600 43 1 7.8834 1.9210 -2.2210 44 1 4.1163 -2.1381 0.0084 45 1 1.6552 -2.1327 0.0071 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123958808.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:04 Heat of formation + Delta-G solvation = -25.061627 kcal Electronic energy + Delta-G solvation = -27481.435766 eV Core-core repulsion = 23850.740771 eV Total energy + Delta-G solvation = -3630.694995 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.74536 -39.32944 -37.91371 -35.32074 -33.74934 -33.00331 -32.73248 -31.04672 -30.30928 -27.93724 -27.55491 -26.25033 -24.78049 -23.48913 -22.61708 -21.76878 -21.31575 -19.85193 -18.11496 -16.96359 -16.71459 -16.50055 -15.78515 -15.42661 -15.04799 -14.75882 -14.45936 -14.27125 -13.74989 -13.63143 -13.50894 -13.31285 -13.03253 -12.83248 -12.71113 -12.63666 -12.35174 -12.14784 -11.90483 -11.85443 -11.69379 -11.50886 -11.27655 -11.05076 -10.88566 -10.77399 -10.53150 -10.47309 -10.27660 -10.20252 -10.00272 -9.04812 -8.72939 -8.61300 -8.31585 -7.71987 -7.06703 -6.25275 -4.32159 1.83846 2.04158 2.31469 3.14899 3.18174 3.24208 3.29497 3.55380 3.90729 4.26364 4.47263 4.94665 5.01864 5.07593 5.21168 5.31873 5.33683 5.41850 5.53830 5.62398 5.63622 5.67588 5.75051 5.80900 5.82352 5.85976 5.98773 6.00638 6.12596 6.16255 6.17389 6.27308 6.31657 6.47736 6.57777 6.63584 6.73974 6.84090 6.98007 7.01187 7.10509 7.20169 7.35494 7.66273 7.73631 7.87609 7.95385 8.15895 8.69949 8.84196 9.33807 10.81086 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.010951 B = 0.005976 C = 0.004414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2556.316408 B = 4684.063883 C = 6342.161941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.133 4.133 3 C -0.107 4.107 4 C -0.178 4.178 5 C 0.164 3.836 6 N -0.530 5.530 7 C 0.229 3.771 8 C -0.530 4.530 9 H 0.061 0.939 10 C 0.068 3.932 11 N -0.889 5.889 12 Si 0.892 3.108 13 H -0.278 1.278 14 H -0.284 1.284 15 H -0.272 1.272 16 C 0.585 3.415 17 O -0.546 6.546 18 C -0.259 4.259 19 C 0.126 3.874 20 C -0.116 4.116 21 O -0.314 6.314 22 C 0.059 3.941 23 C -0.152 4.152 24 C -0.060 4.060 25 C -0.143 4.143 26 C -0.103 4.103 27 H 0.060 0.940 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.113 0.887 31 H 0.179 0.821 32 H 0.048 0.952 33 H 0.044 0.956 34 H 0.266 0.734 35 H 0.088 0.912 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.100 0.900 39 H 0.078 0.922 40 H 0.072 0.928 41 H 0.081 0.919 42 H 0.092 0.908 43 H 0.071 0.929 44 H 0.137 0.863 45 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.438 6.596 1.465 6.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.134 4.134 3 C -0.126 4.126 4 C -0.197 4.197 5 C 0.068 3.932 6 N -0.249 5.249 7 C 0.110 3.890 8 C -0.569 4.569 9 H 0.079 0.921 10 C -0.135 4.135 11 N -0.527 5.527 12 Si 0.719 3.281 13 H -0.204 1.204 14 H -0.210 1.210 15 H -0.197 1.197 16 C 0.377 3.623 17 O -0.428 6.428 18 C -0.263 4.263 19 C 0.078 3.922 20 C -0.172 4.172 21 O -0.227 6.227 22 C -0.015 4.015 23 C -0.189 4.189 24 C -0.098 4.098 25 C -0.164 4.164 26 C -0.122 4.122 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.131 0.869 31 H 0.195 0.805 32 H 0.066 0.934 33 H 0.062 0.938 34 H 0.075 0.925 35 H 0.106 0.894 36 H 0.095 0.905 37 H 0.098 0.902 38 H 0.118 0.882 39 H 0.096 0.904 40 H 0.090 0.910 41 H 0.099 0.901 42 H 0.110 0.890 43 H 0.089 0.911 44 H 0.155 0.845 45 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -1.400 6.966 1.669 7.299 hybrid contribution 0.260 -0.926 -1.289 1.608 sum -1.141 6.040 0.380 6.158 Atomic orbital electron populations 1.20657 0.92155 1.01855 1.01368 1.19770 0.95375 0.93541 1.04710 1.20897 0.94043 0.96724 1.00911 1.22773 0.94306 1.00349 1.02317 1.18116 0.83031 0.94172 0.97862 1.46178 1.03870 1.10395 1.64418 1.19692 0.92213 0.78728 0.98327 1.21332 1.36567 1.06830 0.92129 0.92062 1.24875 0.95407 0.96422 0.96809 1.69915 1.38490 1.16938 1.27356 0.86578 0.78953 0.78409 0.84139 1.20428 1.20975 1.19691 1.16816 0.87826 0.82762 0.74866 1.90376 1.68910 1.32024 1.51537 1.19474 0.93415 1.17343 0.96090 1.20583 0.82507 0.94217 0.94880 1.20968 0.99070 1.04002 0.93181 1.86075 1.16370 1.84569 1.35681 1.23446 0.95457 1.00339 0.82292 1.22179 0.97045 1.00340 0.99354 1.20189 0.93397 1.03152 0.93020 1.21103 0.94027 0.97715 1.03506 1.20717 0.93476 0.97013 1.00999 0.92119 0.92323 0.92261 0.86892 0.80461 0.93430 0.93793 0.92452 0.89362 0.90523 0.90233 0.88173 0.90401 0.90961 0.90063 0.88958 0.91075 0.84527 0.86630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.26 10.01 36.01 0.36 -0.90 16 2 C -0.13 -2.13 5.88 -104.59 -0.62 -2.74 16 3 C -0.11 -1.82 9.69 -39.61 -0.38 -2.20 16 4 C -0.18 -3.52 9.04 -39.39 -0.36 -3.87 16 5 C 0.16 3.46 6.49 -83.72 -0.54 2.92 16 6 N -0.53 -11.53 2.69 -117.90 -0.32 -11.84 16 7 C 0.23 5.34 4.23 -5.20 -0.02 5.32 16 8 C -0.53 -13.31 8.51 -34.44 -0.29 -13.60 16 9 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 10 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 11 N -0.89 -23.55 13.29 55.43 0.74 -22.81 16 12 Si 0.89 19.96 29.54 -169.99 -5.02 14.94 16 13 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 14 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 15 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 16 C 0.58 12.43 4.54 -14.91 -0.07 12.36 16 17 O -0.55 -12.15 13.48 5.15 0.07 -12.08 16 18 C -0.26 -5.06 4.03 -105.08 -0.42 -5.49 16 19 C 0.13 2.30 5.68 -35.97 -0.20 2.10 16 20 C -0.12 -1.91 9.21 36.01 0.33 -1.57 16 21 O -0.31 -5.36 10.41 -14.90 -0.15 -5.51 16 22 C 0.06 0.85 7.15 37.41 0.27 1.12 16 23 C -0.15 -2.12 6.24 -26.28 -0.16 -2.28 16 24 C -0.06 -1.07 5.90 -27.82 -0.16 -1.23 16 25 C -0.14 -2.85 9.15 -39.39 -0.36 -3.21 16 26 C -0.10 -1.77 9.69 -39.61 -0.38 -2.15 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.06 0.65 8.09 -51.93 -0.42 0.23 16 29 H 0.06 0.66 8.08 -51.93 -0.42 0.24 16 30 H 0.11 1.64 8.06 -52.49 -0.42 1.21 16 31 H 0.18 3.70 4.54 -56.19 -0.26 3.44 16 32 H 0.05 1.14 5.01 -51.93 -0.26 0.88 16 33 H 0.04 1.08 6.31 -51.93 -0.33 0.75 16 34 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 35 H 0.09 1.47 7.35 -51.93 -0.38 1.09 16 36 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.08 1.37 6.56 -51.92 -0.34 1.03 16 38 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 40 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 41 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.09 1.79 7.45 -51.93 -0.39 1.41 16 43 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 44 H 0.14 2.88 6.28 -52.49 -0.33 2.55 16 45 H 0.12 1.70 8.06 -52.49 -0.42 1.28 16 LS Contribution 360.52 15.07 5.43 5.43 Total: -1.00 -28.28 360.52 -8.84 -37.12 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: -6.47 Total: 8.56 kcal Atomic # 6 Polarization: -10.69 SS G_CDS: -3.12 Total: -13.81 kcal Atomic # 7 Polarization: -35.07 SS G_CDS: 0.42 Total: -34.65 kcal Atomic # 8 Polarization: -17.50 SS G_CDS: -0.09 Total: -17.59 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.02 Total: 14.94 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -28.28 -8.84 -37.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123958808.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.060 kcal (2) G-P(sol) polarization free energy of solvation -28.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds