Wall clock time and date at job start Tue Mar 31 2020 12:12:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38288 * 119.92386 * 2 1 4 4 C 1.38104 * 120.06982 * 180.25701 * 3 2 1 5 5 C 1.38892 * 119.92525 * 359.51546 * 4 3 2 6 6 N 1.39857 * 120.07063 * 180.27447 * 5 4 3 7 7 C 1.46495 * 119.99995 * 172.56383 * 6 5 4 8 8 C 1.50695 * 109.47130 * 94.03438 * 7 6 5 9 9 H 1.07999 * 120.00147 * 0.02562 * 8 7 6 10 10 C 1.37877 * 120.00116 * 179.97438 * 8 7 6 11 11 N 1.31514 * 120.00024 * 0.02562 * 10 8 7 12 12 Si 1.86807 * 119.99949 * 179.97438 * 10 8 7 13 13 H 1.48504 * 109.46875 * 90.00722 * 12 10 8 14 14 H 1.48502 * 109.46929 * 209.99977 * 12 10 8 15 15 H 1.48492 * 109.47343 * 330.00702 * 12 10 8 16 16 C 1.34772 * 119.99618 * 352.56646 * 6 5 4 17 17 O 1.21747 * 120.00733 * 3.93798 * 16 6 5 18 18 C 1.41767 * 119.99834 * 183.93724 * 16 6 5 19 19 C 1.33480 * 118.78819 * 278.35334 * 18 16 6 20 20 C 1.50702 * 118.46231 * 0.41177 * 19 18 16 21 21 O 1.34353 * 123.07431 * 180.38723 * 19 18 16 22 22 C 1.45355 * 117.48157 * 343.69482 * 21 19 18 23 23 C 1.53479 * 108.26649 * 47.48030 * 22 21 19 24 24 C 1.50413 * 118.78931 * 98.08152 * 18 16 6 25 25 C 1.38883 * 119.85975 * 0.25303 * 5 4 3 26 26 C 1.38115 * 119.92535 * 0.02562 * 25 5 4 27 27 H 1.09001 * 109.46918 * 270.20185 * 1 2 3 28 28 H 1.08999 * 109.47217 * 30.20912 * 1 2 3 29 29 H 1.09004 * 109.47177 * 150.20842 * 1 2 3 30 30 H 1.07999 * 119.96219 * 0.05020 * 3 2 1 31 31 H 1.07995 * 120.03983 * 179.79564 * 4 3 2 32 32 H 1.08999 * 109.47444 * 214.03785 * 7 6 5 33 33 H 1.09007 * 109.47383 * 334.03551 * 7 6 5 34 34 H 0.97006 * 119.99818 * 179.97438 * 11 10 8 35 35 H 1.09003 * 109.47330 * 94.66297 * 20 19 18 36 36 H 1.09005 * 109.46946 * 214.66558 * 20 19 18 37 37 H 1.09007 * 109.46999 * 334.66347 * 20 19 18 38 38 H 1.09006 * 109.70432 * 167.17112 * 22 21 19 39 39 H 1.08994 * 109.70347 * 287.73876 * 22 21 19 40 40 H 1.09001 * 109.70352 * 56.98114 * 23 22 21 41 41 H 1.09000 * 109.70495 * 177.55793 * 23 22 21 42 42 H 1.09002 * 109.45774 * 282.36588 * 24 18 16 43 43 H 1.09001 * 109.45622 * 42.30364 * 24 18 16 44 44 H 1.07999 * 120.04097 * 180.02562 * 25 5 4 45 45 H 1.07998 * 119.96222 * 179.97438 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1985 0.0000 4 6 3.5779 1.2021 -0.0054 5 6 4.2739 0.0001 -0.0006 6 7 5.6724 0.0002 -0.0002 7 6 6.4049 -1.2572 0.1690 8 6 6.7430 -1.8276 -1.1842 9 1 6.4427 -1.3055 -2.0807 10 6 7.4367 -3.0155 -1.2779 11 7 7.8028 -3.6510 -0.1863 12 14 7.8552 -3.7229 -2.9555 13 1 9.1754 -3.2046 -3.3958 14 1 7.9090 -5.2044 -2.8685 15 1 6.8141 -3.3220 -3.9355 16 6 6.3462 1.1570 -0.1554 17 8 5.7397 2.2104 -0.2241 18 6 7.7614 1.1473 -0.2388 19 6 8.4714 1.0882 0.8900 20 6 7.7316 1.0249 2.2014 21 8 9.8148 1.0819 0.9117 22 6 10.5043 0.7789 -0.3315 23 6 9.8743 1.6217 -1.4488 24 6 8.4074 1.1978 -1.5962 25 6 3.5780 -1.2018 0.0043 26 6 2.1969 -1.1984 0.0038 27 1 -0.3633 0.0036 1.0277 28 1 -0.3633 0.8881 -0.5171 29 1 -0.3634 -0.8919 -0.5106 30 1 1.6550 2.1328 0.0008 31 1 4.1161 2.1383 -0.0087 32 1 7.3239 -1.0705 0.7246 33 1 5.7863 -1.9671 0.7182 34 1 8.2905 -4.4870 -0.2523 35 1 7.6224 -0.0156 2.5072 36 1 8.2917 1.5702 2.9611 37 1 6.7455 1.4746 2.0843 38 1 11.5614 1.0271 -0.2354 39 1 10.3953 -0.2805 -0.5634 40 1 9.9315 2.6786 -1.1886 41 1 10.4032 1.4446 -2.3854 42 1 8.3553 0.2127 -2.0600 43 1 7.8834 1.9210 -2.2210 44 1 4.1163 -2.1381 0.0084 45 1 1.6552 -2.1327 0.0071 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123958808.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:04 Heat of formation + Delta-G solvation = -38.872180 kcal Electronic energy + Delta-G solvation = -27482.034636 eV Core-core repulsion = 23850.740771 eV Total energy + Delta-G solvation = -3631.293866 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.29239 -40.72976 -39.37297 -37.01389 -35.13755 -34.66437 -34.28109 -32.42836 -31.77106 -29.40923 -29.24393 -27.56948 -26.12735 -25.30887 -24.01007 -23.29378 -22.67991 -21.31898 -19.56094 -18.68178 -18.40617 -18.18543 -17.17507 -16.92336 -16.48939 -16.35677 -15.99203 -15.79218 -15.17877 -15.04849 -14.88635 -14.54273 -14.45847 -14.39644 -14.13327 -14.06497 -13.89734 -13.47066 -13.34818 -13.19675 -13.18334 -12.95531 -12.84961 -12.66082 -12.52572 -12.24580 -12.08616 -11.91683 -11.81942 -11.67278 -11.50890 -10.72044 -10.64900 -10.26515 -9.77796 -9.18857 -8.64948 -8.20789 -6.36149 0.36490 0.57595 0.84843 1.35859 1.39376 1.47815 1.61302 2.22289 2.30085 2.41159 2.99508 3.07239 3.60743 3.76742 3.93234 3.99461 4.12439 4.17874 4.23370 4.30539 4.37827 4.43886 4.49635 4.51117 4.56198 4.59165 4.64391 4.73491 4.81851 4.91639 4.93005 4.94094 4.96181 5.11926 5.18406 5.20789 5.26703 5.27353 5.34372 5.50340 5.57164 5.64941 5.77357 5.86019 5.98875 6.33283 6.34207 6.46708 6.73954 7.16075 7.33606 8.82745 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.010951 B = 0.005976 C = 0.004414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2556.316408 B = 4684.063883 C = 6342.161941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.122 4.122 3 C -0.106 4.106 4 C -0.192 4.192 5 C 0.130 3.870 6 N -0.534 5.534 7 C 0.250 3.750 8 C -0.532 4.532 9 H 0.045 0.955 10 C 0.031 3.969 11 N -0.915 5.915 12 Si 0.947 3.053 13 H -0.266 1.266 14 H -0.280 1.280 15 H -0.277 1.277 16 C 0.583 3.417 17 O -0.564 6.564 18 C -0.290 4.290 19 C 0.133 3.867 20 C -0.114 4.114 21 O -0.317 6.317 22 C 0.053 3.947 23 C -0.141 4.141 24 C -0.061 4.061 25 C -0.161 4.161 26 C -0.103 4.103 27 H 0.078 0.922 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.143 0.857 31 H 0.166 0.834 32 H 0.039 0.961 33 H 0.026 0.974 34 H 0.268 0.732 35 H 0.082 0.918 36 H 0.105 0.895 37 H 0.066 0.934 38 H 0.143 0.857 39 H 0.058 0.942 40 H 0.083 0.917 41 H 0.109 0.891 42 H 0.067 0.933 43 H 0.066 0.934 44 H 0.115 0.885 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.934 7.084 1.026 7.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.123 4.123 3 C -0.124 4.124 4 C -0.211 4.211 5 C 0.035 3.965 6 N -0.253 5.253 7 C 0.130 3.870 8 C -0.570 4.570 9 H 0.063 0.937 10 C -0.170 4.170 11 N -0.554 5.554 12 Si 0.773 3.227 13 H -0.191 1.191 14 H -0.205 1.205 15 H -0.202 1.202 16 C 0.377 3.623 17 O -0.447 6.447 18 C -0.294 4.294 19 C 0.084 3.916 20 C -0.170 4.170 21 O -0.230 6.230 22 C -0.020 4.020 23 C -0.179 4.179 24 C -0.098 4.098 25 C -0.181 4.181 26 C -0.121 4.121 27 H 0.097 0.903 28 H 0.093 0.907 29 H 0.092 0.908 30 H 0.160 0.840 31 H 0.182 0.818 32 H 0.056 0.944 33 H 0.044 0.956 34 H 0.078 0.922 35 H 0.100 0.900 36 H 0.124 0.876 37 H 0.085 0.915 38 H 0.160 0.840 39 H 0.077 0.923 40 H 0.102 0.898 41 H 0.128 0.872 42 H 0.085 0.915 43 H 0.085 0.915 44 H 0.133 0.867 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -1.902 7.458 1.228 7.794 hybrid contribution 0.312 -1.064 -1.115 1.572 sum -1.590 6.395 0.113 6.590 Atomic orbital electron populations 1.20735 0.88628 1.03444 1.02965 1.20244 0.97803 0.92413 1.01875 1.21247 0.92949 0.98625 0.99579 1.22721 0.95719 0.99224 1.03437 1.18425 0.82828 0.95247 1.00005 1.46104 1.04424 1.09874 1.64874 1.19273 0.91443 0.79092 0.97170 1.21357 1.36531 1.06988 0.92162 0.93674 1.25489 0.95190 0.96560 0.99775 1.69998 1.39108 1.17323 1.28981 0.85711 0.78956 0.77757 0.80301 1.19142 1.20544 1.20191 1.17098 0.88571 0.82356 0.74306 1.90360 1.69536 1.32320 1.52506 1.19627 0.92742 1.19557 0.97477 1.20812 0.83252 0.92469 0.95057 1.20964 0.98765 1.03876 0.93404 1.86076 1.15489 1.84090 1.37316 1.23734 0.97356 0.99423 0.81488 1.22172 0.94355 1.00698 1.00631 1.20181 0.96079 1.01717 0.91854 1.21072 0.95455 0.96439 1.05149 1.21052 0.92316 0.98926 0.99837 0.90344 0.90676 0.90845 0.83950 0.81778 0.94352 0.95631 0.92237 0.89974 0.87636 0.91483 0.83965 0.92332 0.89798 0.87224 0.91459 0.91525 0.86705 0.84021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.05 10.01 71.24 0.71 -1.34 16 2 C -0.12 -3.65 5.88 -19.84 -0.12 -3.76 16 3 C -0.11 -3.45 9.69 22.25 0.22 -3.23 16 4 C -0.19 -7.73 9.04 22.39 0.20 -7.53 16 5 C 0.13 5.73 6.49 38.17 0.25 5.98 16 6 N -0.53 -24.58 2.69 -645.13 -1.73 -26.31 16 7 C 0.25 12.33 4.23 85.63 0.36 12.69 16 8 C -0.53 -27.84 8.51 25.60 0.22 -27.63 16 9 H 0.04 2.47 7.81 -2.91 -0.02 2.45 16 10 C 0.03 1.59 5.46 84.65 0.46 2.05 16 11 N -0.92 -49.50 13.29 21.45 0.28 -49.21 16 12 Si 0.95 41.34 29.54 68.60 2.03 43.37 16 13 H -0.27 -11.05 7.11 99.48 0.71 -10.35 16 14 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 15 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 16 C 0.58 26.04 4.54 85.11 0.39 26.42 16 17 O -0.56 -26.22 13.48 -4.50 -0.06 -26.28 16 18 C -0.29 -11.72 4.03 -20.16 -0.08 -11.80 16 19 C 0.13 4.92 5.68 24.61 0.14 5.06 16 20 C -0.11 -3.83 9.21 71.24 0.66 -3.17 16 21 O -0.32 -10.55 10.41 -76.21 -0.79 -11.34 16 22 C 0.05 1.46 7.15 72.14 0.52 1.98 16 23 C -0.14 -3.75 6.24 30.89 0.19 -3.55 16 24 C -0.06 -2.20 5.90 29.89 0.18 -2.02 16 25 C -0.16 -6.63 9.15 22.40 0.20 -6.43 16 26 C -0.10 -3.43 9.69 22.25 0.22 -3.21 16 27 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.07 1.32 8.09 -2.39 -0.02 1.30 16 29 H 0.07 1.32 8.08 -2.38 -0.02 1.30 16 30 H 0.14 3.74 8.06 -2.91 -0.02 3.72 16 31 H 0.17 7.11 4.54 -61.57 -0.28 6.83 16 32 H 0.04 1.95 5.01 -2.39 -0.01 1.94 16 33 H 0.03 1.35 6.31 -2.38 -0.02 1.33 16 34 H 0.27 13.76 8.31 -92.70 -0.77 12.99 16 35 H 0.08 2.86 7.35 -2.39 -0.02 2.84 16 36 H 0.10 2.86 8.14 -2.38 -0.02 2.84 16 37 H 0.07 2.41 6.56 -2.38 -0.02 2.40 16 38 H 0.14 2.70 8.14 -2.38 -0.02 2.68 16 39 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 40 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 41 H 0.11 2.29 8.14 -2.39 -0.02 2.27 16 42 H 0.07 2.73 7.45 -2.39 -0.02 2.71 16 43 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 44 H 0.11 5.16 6.28 -2.91 -0.02 5.14 16 45 H 0.14 3.89 8.06 -2.91 -0.02 3.87 16 Total: -1.00 -63.35 360.52 5.16 -58.19 By element: Atomic # 1 Polarization: 30.36 SS G_CDS: 0.73 Total: 31.09 kcal Atomic # 6 Polarization: -24.21 SS G_CDS: 4.71 Total: -19.49 kcal Atomic # 7 Polarization: -74.07 SS G_CDS: -1.45 Total: -75.52 kcal Atomic # 8 Polarization: -36.77 SS G_CDS: -0.85 Total: -37.62 kcal Atomic # 14 Polarization: 41.34 SS G_CDS: 2.03 Total: 43.37 kcal Total: -63.35 5.16 -58.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123958808.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.315 kcal (2) G-P(sol) polarization free energy of solvation -63.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds