Wall clock time and date at job start Tue Mar 31 2020 12:11:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38133 * 120.03591 * 2 1 4 4 C 1.38260 * 120.07050 * 180.23501 * 3 2 1 5 5 C 1.38305 * 120.15666 * 359.78783 * 4 3 2 6 6 C 1.50700 * 119.96678 * 179.97438 * 5 4 3 7 7 F 1.39897 * 109.46847 * 269.97603 * 6 5 4 8 8 F 1.39899 * 109.47093 * 29.97870 * 6 5 4 9 9 F 1.39901 * 109.47248 * 149.97624 * 6 5 4 10 10 C 1.38090 * 120.06979 * 359.97438 * 5 4 3 11 11 C 1.38887 * 120.03881 * 179.76747 * 2 1 3 12 12 N 1.39675 * 120.07726 * 0.02562 * 11 2 1 13 13 C 1.46499 * 120.00042 * 179.72498 * 12 11 2 14 14 C 1.53003 * 109.46708 * 180.02562 * 13 12 11 15 15 C 1.53003 * 109.46870 * 299.99298 * 14 13 12 16 16 C 1.53000 * 109.47499 * 59.99732 * 14 13 12 17 17 C 1.53000 * 109.46990 * 180.02562 * 14 13 12 18 18 C 1.50698 * 109.47356 * 179.97438 * 17 14 13 19 19 H 1.07998 * 119.99756 * 359.97438 * 18 17 14 20 20 C 1.37878 * 120.00089 * 180.02562 * 18 17 14 21 21 N 1.31513 * 120.00095 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99896 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47263 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47346 * 119.99950 * 22 20 18 25 25 H 1.48501 * 109.47057 * 239.99805 * 22 20 18 26 26 H 1.08996 * 109.46787 * 270.22790 * 1 2 3 27 27 H 1.08996 * 109.47244 * 30.23390 * 1 2 3 28 28 H 1.08998 * 109.46904 * 150.23730 * 1 2 3 29 29 H 1.07999 * 119.95955 * 359.97438 * 3 2 1 30 30 H 1.08001 * 119.92433 * 179.76049 * 4 3 2 31 31 H 1.07993 * 120.03383 * 180.02562 * 10 5 4 32 32 H 0.97005 * 119.99698 * 359.72138 * 12 11 2 33 33 H 1.08998 * 109.47134 * 299.99404 * 13 12 11 34 34 H 1.08994 * 109.47397 * 59.99696 * 13 12 11 35 35 H 1.09007 * 109.46830 * 60.00773 * 15 14 13 36 36 H 1.09005 * 109.46980 * 180.02562 * 15 14 13 37 37 H 1.08994 * 109.47292 * 300.00516 * 15 14 13 38 38 H 1.08992 * 109.46855 * 59.99654 * 16 14 13 39 39 H 1.08995 * 109.47095 * 179.97438 * 16 14 13 40 40 H 1.08998 * 109.46768 * 299.99888 * 16 14 13 41 41 H 1.09005 * 109.47033 * 299.99952 * 17 14 13 42 42 H 1.08999 * 109.47677 * 59.99180 * 17 14 13 43 43 H 0.96996 * 120.00083 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1958 0.0000 4 6 3.5810 1.1967 -0.0049 5 6 4.2766 0.0012 -0.0054 6 6 5.7835 0.0071 -0.0113 7 9 6.2446 0.0059 -1.3322 8 9 6.2480 1.1527 0.6438 9 9 6.2570 -1.1318 0.6489 10 6 3.5916 -1.1978 -0.0005 11 6 2.2023 -1.2023 0.0049 12 7 1.5064 -2.4133 0.0093 13 6 2.2414 -3.6806 0.0083 14 6 1.2494 -4.8454 0.0131 15 6 0.3740 -4.7646 1.2653 16 6 0.3653 -4.7677 -1.2332 17 6 2.0170 -6.1690 0.0127 18 6 1.0400 -7.3163 0.0181 19 1 -0.0221 -7.1211 0.0218 20 6 1.5022 -8.6153 0.0193 21 7 2.7957 -8.8531 0.0153 22 14 0.2911 -10.0376 0.0266 23 1 -1.0957 -9.5068 0.0310 24 1 0.4989 -10.8709 -1.1848 25 1 0.5075 -10.8657 1.2402 26 1 -0.3633 0.0041 1.0276 27 1 -0.3633 0.8878 -0.5174 28 1 -0.3633 -0.8921 -0.5101 29 1 1.6584 2.1311 -0.0004 30 1 4.1192 2.1330 -0.0088 31 1 4.1353 -2.1309 -0.0004 32 1 0.5363 -2.4152 0.0130 33 1 2.8647 -3.7384 -0.8840 34 1 2.8716 -3.7358 0.8959 35 1 -0.1729 -3.8217 1.2660 36 1 -0.3324 -5.5948 1.2690 37 1 1.0038 -4.8200 2.1531 38 1 0.9890 -4.8252 -2.1252 39 1 -0.3410 -5.5978 -1.2300 40 1 -0.1815 -3.8248 -1.2324 41 1 2.6411 -6.2268 -0.8791 42 1 2.6466 -6.2242 0.9008 43 1 3.1208 -9.7670 0.0157 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000162963403.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:51 Heat of formation + Delta-G solvation = -162.054671 kcal Electronic energy + Delta-G solvation = -26576.104471 eV Core-core repulsion = 22397.612271 eV Total energy + Delta-G solvation = -4178.492200 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.151 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -51.17932 -48.69686 -48.65153 -40.91593 -38.99172 -35.89462 -34.46546 -33.83992 -30.54762 -29.34120 -28.76543 -27.98220 -27.41585 -25.56002 -24.88944 -22.78421 -22.15675 -20.01135 -19.51471 -19.38800 -19.24917 -18.38044 -17.30563 -16.78435 -16.39706 -16.27925 -15.89141 -15.57390 -15.50565 -15.15385 -15.08704 -14.92941 -14.85280 -14.81354 -14.80687 -14.38924 -14.34230 -13.99626 -13.95409 -13.40423 -13.20982 -13.13796 -12.89432 -12.70850 -12.63718 -12.36065 -12.32898 -12.21228 -12.05160 -11.91999 -11.62422 -11.06329 -10.99662 -10.84980 -10.52844 -9.90149 -8.37536 -8.15341 -6.22651 0.02571 0.54994 1.40273 1.41869 1.53006 1.66547 2.39448 2.48765 2.60819 2.75945 3.07252 3.19529 3.43239 3.86514 3.94351 4.02905 4.08092 4.17585 4.21583 4.38923 4.53010 4.69764 4.71975 4.73118 4.75886 4.80468 4.87445 4.95125 5.10340 5.11840 5.15134 5.25918 5.34322 5.41752 5.48485 5.49681 5.51187 5.54573 5.79325 5.79593 5.89141 6.23211 6.34216 6.82603 6.92842 7.45233 8.97205 Molecular weight = 315.15amu Principal moments of inertia in cm(-1) A = 0.017098 B = 0.003189 C = 0.002786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1637.186923 B = 8778.198261 C =10049.053933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.135 4.135 3 C -0.070 4.070 4 C -0.135 4.135 5 C -0.152 4.152 6 C 0.508 3.492 7 F -0.183 7.183 8 F -0.175 7.175 9 F -0.187 7.187 10 C -0.172 4.172 11 C 0.208 3.792 12 N -0.727 5.727 13 C 0.143 3.857 14 C -0.064 4.064 15 C -0.120 4.120 16 C -0.120 4.120 17 C 0.040 3.960 18 C -0.514 4.514 19 H 0.070 0.930 20 C -0.003 4.003 21 N -0.937 5.937 22 Si 0.955 3.045 23 H -0.258 1.258 24 H -0.284 1.284 25 H -0.284 1.284 26 H 0.080 0.920 27 H 0.091 0.909 28 H 0.062 0.938 29 H 0.165 0.835 30 H 0.147 0.853 31 H 0.117 0.883 32 H 0.409 0.591 33 H 0.046 0.954 34 H 0.046 0.954 35 H 0.065 0.935 36 H 0.052 0.948 37 H 0.037 0.963 38 H 0.037 0.963 39 H 0.052 0.948 40 H 0.065 0.935 41 H -0.013 1.013 42 H -0.013 1.013 43 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.374 23.304 -0.004 23.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.140 4.140 3 C -0.088 4.088 4 C -0.155 4.155 5 C -0.154 4.154 6 C 0.454 3.546 7 F -0.164 7.164 8 F -0.156 7.156 9 F -0.168 7.168 10 C -0.196 4.196 11 C 0.103 3.897 12 N -0.359 5.359 13 C 0.018 3.982 14 C -0.064 4.064 15 C -0.177 4.177 16 C -0.177 4.177 17 C 0.003 3.997 18 C -0.552 4.552 19 H 0.088 0.912 20 C -0.200 4.200 21 N -0.578 5.578 22 Si 0.781 3.219 23 H -0.182 1.182 24 H -0.210 1.210 25 H -0.210 1.210 26 H 0.099 0.901 27 H 0.110 0.890 28 H 0.081 0.919 29 H 0.183 0.817 30 H 0.165 0.835 31 H 0.135 0.865 32 H 0.248 0.752 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.084 0.916 36 H 0.071 0.929 37 H 0.056 0.944 38 H 0.056 0.944 39 H 0.071 0.929 40 H 0.084 0.916 41 H 0.006 0.994 42 H 0.006 0.994 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -3.125 22.970 -0.005 23.182 hybrid contribution 0.372 -1.604 -0.002 1.647 sum -2.753 21.366 -0.007 21.543 Atomic orbital electron populations 1.20750 0.88874 1.03778 1.03271 1.19943 0.97682 0.91042 1.05287 1.21110 0.92768 0.98176 0.96726 1.20894 0.95281 0.96257 1.03054 1.19666 0.89592 0.96469 1.09643 1.18464 0.89513 0.73221 0.73435 1.93203 1.90701 1.96166 1.36343 1.93170 1.90548 1.50636 1.81292 1.93184 1.90378 1.51987 1.81269 1.20367 0.93537 0.97320 1.08354 1.17702 0.90467 0.86945 0.94617 1.44815 1.08631 1.01634 1.80773 1.21262 0.94394 0.82800 0.99748 1.20670 0.95502 0.93569 0.96705 1.21667 0.99054 1.01074 0.95895 1.21662 0.99012 1.01070 0.95939 1.18969 0.94538 0.91780 0.94426 1.21622 0.93786 0.91129 1.48633 0.91179 1.25907 0.96581 1.02042 0.95495 1.70113 1.14495 1.20600 1.52640 0.85533 0.79783 0.79249 0.77312 1.18188 1.21030 1.21040 0.90135 0.89021 0.91947 0.81710 0.83515 0.86511 0.75181 0.93581 0.93525 0.91614 0.92901 0.94378 0.94380 0.92889 0.91638 0.99440 0.99430 0.93178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.43 9.57 71.24 0.68 -0.75 16 2 C -0.13 -2.54 5.90 -19.73 -0.12 -2.65 16 3 C -0.07 -1.11 9.70 22.25 0.22 -0.90 16 4 C -0.13 -2.57 9.40 22.29 0.21 -2.36 16 5 C -0.15 -3.72 5.45 -19.88 -0.11 -3.83 16 6 C 0.51 12.82 3.36 71.24 0.24 13.06 16 7 F -0.18 -4.79 17.30 44.97 0.78 -4.01 16 8 F -0.18 -4.05 16.46 44.97 0.74 -3.31 16 9 F -0.19 -5.31 16.46 44.97 0.74 -4.57 16 10 C -0.17 -4.72 8.66 22.40 0.19 -4.53 16 11 C 0.21 5.14 6.63 38.21 0.25 5.40 16 12 N -0.73 -18.60 5.03 -339.42 -1.71 -20.30 16 13 C 0.14 4.64 3.80 86.38 0.33 4.97 16 14 C -0.06 -2.34 0.54 -52.18 -0.03 -2.37 16 15 C -0.12 -3.97 8.05 71.98 0.58 -3.39 16 16 C -0.12 -3.97 8.05 71.98 0.58 -3.39 16 17 C 0.04 2.01 4.04 29.85 0.12 2.13 16 18 C -0.51 -27.24 7.65 25.60 0.20 -27.04 16 19 H 0.07 3.51 5.68 -2.91 -0.02 3.49 16 20 C 0.00 -0.18 5.46 84.66 0.46 0.28 16 21 N -0.94 -56.42 13.29 21.45 0.28 -56.13 16 22 Si 0.96 43.34 29.54 68.60 2.03 45.36 16 23 H -0.26 -10.96 7.11 99.48 0.71 -10.26 16 24 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 25 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 26 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.09 0.82 8.09 -2.39 -0.02 0.80 16 28 H 0.06 0.85 6.55 -2.39 -0.02 0.83 16 29 H 0.17 1.46 8.06 -2.91 -0.02 1.44 16 30 H 0.15 2.18 7.60 -2.91 -0.02 2.16 16 31 H 0.12 3.54 6.28 -2.91 -0.02 3.52 16 32 H 0.41 8.98 4.16 -92.70 -0.39 8.60 16 33 H 0.05 1.59 7.95 -2.39 -0.02 1.57 16 34 H 0.05 1.62 7.95 -2.39 -0.02 1.60 16 35 H 0.07 1.69 6.86 -2.38 -0.02 1.67 16 36 H 0.05 1.90 6.61 -2.38 -0.02 1.89 16 37 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.05 1.91 6.62 -2.39 -0.02 1.89 16 40 H 0.06 1.68 6.86 -2.39 -0.02 1.67 16 41 H -0.01 -0.70 8.14 -2.38 -0.02 -0.72 16 42 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 43 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 Total: -1.00 -62.85 353.94 7.32 -55.53 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: 0.65 Total: 12.82 kcal Atomic # 6 Polarization: -29.19 SS G_CDS: 3.81 Total: -25.38 kcal Atomic # 7 Polarization: -75.01 SS G_CDS: -1.42 Total: -76.44 kcal Atomic # 9 Polarization: -14.15 SS G_CDS: 2.26 Total: -11.89 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.36 kcal Total: -62.85 7.32 -55.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162963403.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.526 kcal (2) G-P(sol) polarization free energy of solvation -62.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds