Wall clock time and date at job start Tue Mar 31 2020 12:11:51
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50703 * 1
3 3 C 1.38133 * 120.03591 * 2 1
4 4 C 1.38260 * 120.07050 * 180.23501 * 3 2 1
5 5 C 1.38305 * 120.15666 * 359.78783 * 4 3 2
6 6 C 1.50700 * 119.96678 * 179.97438 * 5 4 3
7 7 F 1.39897 * 109.46847 * 269.97603 * 6 5 4
8 8 F 1.39899 * 109.47093 * 29.97870 * 6 5 4
9 9 F 1.39901 * 109.47248 * 149.97624 * 6 5 4
10 10 C 1.38090 * 120.06979 * 359.97438 * 5 4 3
11 11 C 1.38887 * 120.03881 * 179.76747 * 2 1 3
12 12 N 1.39675 * 120.07726 * 0.02562 * 11 2 1
13 13 C 1.46499 * 120.00042 * 179.72498 * 12 11 2
14 14 C 1.53003 * 109.46708 * 180.02562 * 13 12 11
15 15 C 1.53003 * 109.46870 * 299.99298 * 14 13 12
16 16 C 1.53000 * 109.47499 * 59.99732 * 14 13 12
17 17 C 1.53000 * 109.46990 * 180.02562 * 14 13 12
18 18 C 1.50698 * 109.47356 * 179.97438 * 17 14 13
19 19 H 1.07998 * 119.99756 * 359.97438 * 18 17 14
20 20 C 1.37878 * 120.00089 * 180.02562 * 18 17 14
21 21 N 1.31513 * 120.00095 * 359.97438 * 20 18 17
22 22 Si 1.86800 * 119.99896 * 179.97438 * 20 18 17
23 23 H 1.48499 * 109.47263 * 359.97438 * 22 20 18
24 24 H 1.48497 * 109.47346 * 119.99950 * 22 20 18
25 25 H 1.48501 * 109.47057 * 239.99805 * 22 20 18
26 26 H 1.08996 * 109.46787 * 270.22790 * 1 2 3
27 27 H 1.08996 * 109.47244 * 30.23390 * 1 2 3
28 28 H 1.08998 * 109.46904 * 150.23730 * 1 2 3
29 29 H 1.07999 * 119.95955 * 359.97438 * 3 2 1
30 30 H 1.08001 * 119.92433 * 179.76049 * 4 3 2
31 31 H 1.07993 * 120.03383 * 180.02562 * 10 5 4
32 32 H 0.97005 * 119.99698 * 359.72138 * 12 11 2
33 33 H 1.08998 * 109.47134 * 299.99404 * 13 12 11
34 34 H 1.08994 * 109.47397 * 59.99696 * 13 12 11
35 35 H 1.09007 * 109.46830 * 60.00773 * 15 14 13
36 36 H 1.09005 * 109.46980 * 180.02562 * 15 14 13
37 37 H 1.08994 * 109.47292 * 300.00516 * 15 14 13
38 38 H 1.08992 * 109.46855 * 59.99654 * 16 14 13
39 39 H 1.08995 * 109.47095 * 179.97438 * 16 14 13
40 40 H 1.08998 * 109.46768 * 299.99888 * 16 14 13
41 41 H 1.09005 * 109.47033 * 299.99952 * 17 14 13
42 42 H 1.08999 * 109.47677 * 59.99180 * 17 14 13
43 43 H 0.96996 * 120.00083 * 180.02562 * 21 20 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1984 1.1958 0.0000
4 6 3.5810 1.1967 -0.0049
5 6 4.2766 0.0012 -0.0054
6 6 5.7835 0.0071 -0.0113
7 9 6.2446 0.0059 -1.3322
8 9 6.2480 1.1527 0.6438
9 9 6.2570 -1.1318 0.6489
10 6 3.5916 -1.1978 -0.0005
11 6 2.2023 -1.2023 0.0049
12 7 1.5064 -2.4133 0.0093
13 6 2.2414 -3.6806 0.0083
14 6 1.2494 -4.8454 0.0131
15 6 0.3740 -4.7646 1.2653
16 6 0.3653 -4.7677 -1.2332
17 6 2.0170 -6.1690 0.0127
18 6 1.0400 -7.3163 0.0181
19 1 -0.0221 -7.1211 0.0218
20 6 1.5022 -8.6153 0.0193
21 7 2.7957 -8.8531 0.0153
22 14 0.2911 -10.0376 0.0266
23 1 -1.0957 -9.5068 0.0310
24 1 0.4989 -10.8709 -1.1848
25 1 0.5075 -10.8657 1.2402
26 1 -0.3633 0.0041 1.0276
27 1 -0.3633 0.8878 -0.5174
28 1 -0.3633 -0.8921 -0.5101
29 1 1.6584 2.1311 -0.0004
30 1 4.1192 2.1330 -0.0088
31 1 4.1353 -2.1309 -0.0004
32 1 0.5363 -2.4152 0.0130
33 1 2.8647 -3.7384 -0.8840
34 1 2.8716 -3.7358 0.8959
35 1 -0.1729 -3.8217 1.2660
36 1 -0.3324 -5.5948 1.2690
37 1 1.0038 -4.8200 2.1531
38 1 0.9890 -4.8252 -2.1252
39 1 -0.3410 -5.5978 -1.2300
40 1 -0.1815 -3.8248 -1.2324
41 1 2.6411 -6.2268 -0.8791
42 1 2.6466 -6.2242 0.9008
43 1 3.1208 -9.7670 0.0157
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000162963403.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:11:51
Heat of formation + Delta-G solvation = -162.054671 kcal
Electronic energy + Delta-G solvation = -26576.104471 eV
Core-core repulsion = 22397.612271 eV
Total energy + Delta-G solvation = -4178.492200 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 315.151 amu
Computer time = 0.82 seconds
Orbital eigenvalues (eV)
-51.17932 -48.69686 -48.65153 -40.91593 -38.99172 -35.89462 -34.46546 -33.83992
-30.54762 -29.34120 -28.76543 -27.98220 -27.41585 -25.56002 -24.88944 -22.78421
-22.15675 -20.01135 -19.51471 -19.38800 -19.24917 -18.38044 -17.30563 -16.78435
-16.39706 -16.27925 -15.89141 -15.57390 -15.50565 -15.15385 -15.08704 -14.92941
-14.85280 -14.81354 -14.80687 -14.38924 -14.34230 -13.99626 -13.95409 -13.40423
-13.20982 -13.13796 -12.89432 -12.70850 -12.63718 -12.36065 -12.32898 -12.21228
-12.05160 -11.91999 -11.62422 -11.06329 -10.99662 -10.84980 -10.52844 -9.90149
-8.37536 -8.15341 -6.22651 0.02571 0.54994 1.40273 1.41869 1.53006
1.66547 2.39448 2.48765 2.60819 2.75945 3.07252 3.19529 3.43239
3.86514 3.94351 4.02905 4.08092 4.17585 4.21583 4.38923 4.53010
4.69764 4.71975 4.73118 4.75886 4.80468 4.87445 4.95125 5.10340
5.11840 5.15134 5.25918 5.34322 5.41752 5.48485 5.49681 5.51187
5.54573 5.79325 5.79593 5.89141 6.23211 6.34216 6.82603 6.92842
7.45233 8.97205
Molecular weight = 315.15amu
Principal moments of inertia in cm(-1)
A = 0.017098 B = 0.003189 C = 0.002786
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1637.186923 B = 8778.198261 C =10049.053933
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.110 4.110
2 C -0.135 4.135
3 C -0.070 4.070
4 C -0.135 4.135
5 C -0.152 4.152
6 C 0.508 3.492
7 F -0.183 7.183
8 F -0.175 7.175
9 F -0.187 7.187
10 C -0.172 4.172
11 C 0.208 3.792
12 N -0.727 5.727
13 C 0.143 3.857
14 C -0.064 4.064
15 C -0.120 4.120
16 C -0.120 4.120
17 C 0.040 3.960
18 C -0.514 4.514
19 H 0.070 0.930
20 C -0.003 4.003
21 N -0.937 5.937
22 Si 0.955 3.045
23 H -0.258 1.258
24 H -0.284 1.284
25 H -0.284 1.284
26 H 0.080 0.920
27 H 0.091 0.909
28 H 0.062 0.938
29 H 0.165 0.835
30 H 0.147 0.853
31 H 0.117 0.883
32 H 0.409 0.591
33 H 0.046 0.954
34 H 0.046 0.954
35 H 0.065 0.935
36 H 0.052 0.948
37 H 0.037 0.963
38 H 0.037 0.963
39 H 0.052 0.948
40 H 0.065 0.935
41 H -0.013 1.013
42 H -0.013 1.013
43 H 0.259 0.741
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.374 23.304 -0.004 23.547
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.167 4.167
2 C -0.140 4.140
3 C -0.088 4.088
4 C -0.155 4.155
5 C -0.154 4.154
6 C 0.454 3.546
7 F -0.164 7.164
8 F -0.156 7.156
9 F -0.168 7.168
10 C -0.196 4.196
11 C 0.103 3.897
12 N -0.359 5.359
13 C 0.018 3.982
14 C -0.064 4.064
15 C -0.177 4.177
16 C -0.177 4.177
17 C 0.003 3.997
18 C -0.552 4.552
19 H 0.088 0.912
20 C -0.200 4.200
21 N -0.578 5.578
22 Si 0.781 3.219
23 H -0.182 1.182
24 H -0.210 1.210
25 H -0.210 1.210
26 H 0.099 0.901
27 H 0.110 0.890
28 H 0.081 0.919
29 H 0.183 0.817
30 H 0.165 0.835
31 H 0.135 0.865
32 H 0.248 0.752
33 H 0.064 0.936
34 H 0.065 0.935
35 H 0.084 0.916
36 H 0.071 0.929
37 H 0.056 0.944
38 H 0.056 0.944
39 H 0.071 0.929
40 H 0.084 0.916
41 H 0.006 0.994
42 H 0.006 0.994
43 H 0.068 0.932
Dipole moment (debyes) X Y Z Total
from point charges -3.125 22.970 -0.005 23.182
hybrid contribution 0.372 -1.604 -0.002 1.647
sum -2.753 21.366 -0.007 21.543
Atomic orbital electron populations
1.20750 0.88874 1.03778 1.03271 1.19943 0.97682 0.91042 1.05287
1.21110 0.92768 0.98176 0.96726 1.20894 0.95281 0.96257 1.03054
1.19666 0.89592 0.96469 1.09643 1.18464 0.89513 0.73221 0.73435
1.93203 1.90701 1.96166 1.36343 1.93170 1.90548 1.50636 1.81292
1.93184 1.90378 1.51987 1.81269 1.20367 0.93537 0.97320 1.08354
1.17702 0.90467 0.86945 0.94617 1.44815 1.08631 1.01634 1.80773
1.21262 0.94394 0.82800 0.99748 1.20670 0.95502 0.93569 0.96705
1.21667 0.99054 1.01074 0.95895 1.21662 0.99012 1.01070 0.95939
1.18969 0.94538 0.91780 0.94426 1.21622 0.93786 0.91129 1.48633
0.91179 1.25907 0.96581 1.02042 0.95495 1.70113 1.14495 1.20600
1.52640 0.85533 0.79783 0.79249 0.77312 1.18188 1.21030 1.21040
0.90135 0.89021 0.91947 0.81710 0.83515 0.86511 0.75181 0.93581
0.93525 0.91614 0.92901 0.94378 0.94380 0.92889 0.91638 0.99440
0.99430 0.93178
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -1.43 9.57 71.24 0.68 -0.75 16
2 C -0.13 -2.54 5.90 -19.73 -0.12 -2.65 16
3 C -0.07 -1.11 9.70 22.25 0.22 -0.90 16
4 C -0.13 -2.57 9.40 22.29 0.21 -2.36 16
5 C -0.15 -3.72 5.45 -19.88 -0.11 -3.83 16
6 C 0.51 12.82 3.36 71.24 0.24 13.06 16
7 F -0.18 -4.79 17.30 44.97 0.78 -4.01 16
8 F -0.18 -4.05 16.46 44.97 0.74 -3.31 16
9 F -0.19 -5.31 16.46 44.97 0.74 -4.57 16
10 C -0.17 -4.72 8.66 22.40 0.19 -4.53 16
11 C 0.21 5.14 6.63 38.21 0.25 5.40 16
12 N -0.73 -18.60 5.03 -339.42 -1.71 -20.30 16
13 C 0.14 4.64 3.80 86.38 0.33 4.97 16
14 C -0.06 -2.34 0.54 -52.18 -0.03 -2.37 16
15 C -0.12 -3.97 8.05 71.98 0.58 -3.39 16
16 C -0.12 -3.97 8.05 71.98 0.58 -3.39 16
17 C 0.04 2.01 4.04 29.85 0.12 2.13 16
18 C -0.51 -27.24 7.65 25.60 0.20 -27.04 16
19 H 0.07 3.51 5.68 -2.91 -0.02 3.49 16
20 C 0.00 -0.18 5.46 84.66 0.46 0.28 16
21 N -0.94 -56.42 13.29 21.45 0.28 -56.13 16
22 Si 0.96 43.34 29.54 68.60 2.03 45.36 16
23 H -0.26 -10.96 7.11 99.48 0.71 -10.26 16
24 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16
25 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16
26 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16
27 H 0.09 0.82 8.09 -2.39 -0.02 0.80 16
28 H 0.06 0.85 6.55 -2.39 -0.02 0.83 16
29 H 0.17 1.46 8.06 -2.91 -0.02 1.44 16
30 H 0.15 2.18 7.60 -2.91 -0.02 2.16 16
31 H 0.12 3.54 6.28 -2.91 -0.02 3.52 16
32 H 0.41 8.98 4.16 -92.70 -0.39 8.60 16
33 H 0.05 1.59 7.95 -2.39 -0.02 1.57 16
34 H 0.05 1.62 7.95 -2.39 -0.02 1.60 16
35 H 0.07 1.69 6.86 -2.38 -0.02 1.67 16
36 H 0.05 1.90 6.61 -2.38 -0.02 1.89 16
37 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16
38 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16
39 H 0.05 1.91 6.62 -2.39 -0.02 1.89 16
40 H 0.06 1.68 6.86 -2.39 -0.02 1.67 16
41 H -0.01 -0.70 8.14 -2.38 -0.02 -0.72 16
42 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16
43 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16
Total: -1.00 -62.85 353.94 7.32 -55.53
By element:
Atomic # 1 Polarization: 12.17 SS G_CDS: 0.65 Total: 12.82 kcal
Atomic # 6 Polarization: -29.19 SS G_CDS: 3.81 Total: -25.38 kcal
Atomic # 7 Polarization: -75.01 SS G_CDS: -1.42 Total: -76.44 kcal
Atomic # 9 Polarization: -14.15 SS G_CDS: 2.26 Total: -11.89 kcal
Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.36 kcal
Total: -62.85 7.32 -55.53 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000162963403.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -106.526 kcal
(2) G-P(sol) polarization free energy of solvation -62.846 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.372 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.317 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.528 kcal
(6) G-S(sol) free energy of system = (1) + (5) -162.055 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.82 seconds