Wall clock time and date at job start Tue Mar 31 2020 11:24:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38744 * 119.65549 * 2 1 4 4 C 1.36741 * 120.41547 * 179.74308 * 3 2 1 5 5 C 1.39407 * 119.71923 * 0.25449 * 4 3 2 6 6 C 1.46776 * 134.37054 * 179.97438 * 5 4 3 7 7 C 1.50696 * 126.90746 * 0.02562 * 6 5 4 8 8 C 1.50702 * 109.47161 * 84.99927 * 7 6 5 9 9 O 1.21283 * 120.00320 * 0.02562 * 8 7 6 10 10 N 1.34777 * 120.00054 * 179.97438 * 8 7 6 11 11 C 1.46501 * 120.00129 * 180.02562 * 10 8 7 12 12 C 1.52999 * 109.47515 * 180.02562 * 11 10 8 13 13 C 1.52993 * 109.47419 * 179.97438 * 12 11 10 14 14 C 1.50706 * 109.47132 * 179.97438 * 13 12 11 15 15 H 1.07995 * 119.99715 * 359.97438 * 14 13 12 16 16 C 1.37878 * 119.99999 * 180.02562 * 14 13 12 17 17 N 1.31516 * 120.00068 * 180.02562 * 16 14 13 18 18 Si 1.86802 * 119.99820 * 359.97438 * 16 14 13 19 19 H 1.48499 * 109.47227 * 90.00630 * 18 16 14 20 20 H 1.48505 * 109.47025 * 210.00020 * 18 16 14 21 21 H 1.48498 * 109.47538 * 330.00041 * 18 16 14 22 22 C 1.33994 * 106.18660 * 179.97438 * 6 5 4 23 23 O 1.34459 * 110.15123 * 0.02562 * 22 6 5 24 24 C 1.34799 * 110.89002 * 359.97438 * 23 22 6 25 25 C 1.37854 * 119.66211 * 180.27470 * 2 1 3 26 26 C 1.50704 * 120.08560 * 359.97438 * 25 2 1 27 27 H 1.08999 * 109.46831 * 90.00427 * 1 2 3 28 28 H 1.09006 * 109.47311 * 209.99882 * 1 2 3 29 29 H 1.08999 * 109.47631 * 330.00048 * 1 2 3 30 30 H 1.08002 * 119.79400 * 0.02562 * 3 2 1 31 31 H 1.08001 * 120.14113 * 180.28191 * 4 3 2 32 32 H 1.09001 * 109.47076 * 204.99718 * 7 6 5 33 33 H 1.08999 * 109.47545 * 325.00240 * 7 6 5 34 34 H 0.97004 * 120.00200 * 359.97438 * 10 8 7 35 35 H 1.09001 * 109.46693 * 299.99816 * 11 10 8 36 36 H 1.08994 * 109.47684 * 59.99796 * 11 10 8 37 37 H 1.09005 * 109.46719 * 300.00022 * 12 11 10 38 38 H 1.09002 * 109.46928 * 59.99459 * 12 11 10 39 39 H 1.09001 * 109.46962 * 299.99687 * 13 12 11 40 40 H 1.09002 * 109.47292 * 59.99952 * 13 12 11 41 41 H 0.96997 * 119.99766 * 179.97438 * 17 16 14 42 42 H 1.08002 * 124.92585 * 179.97438 * 22 6 5 43 43 H 1.08996 * 109.47259 * 270.28998 * 26 25 2 44 44 H 1.08997 * 109.46914 * 30.29460 * 26 25 2 45 45 H 1.09002 * 109.46795 * 150.29010 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1934 1.2057 0.0000 4 6 3.5607 1.2238 0.0053 5 6 4.2678 0.0224 0.0053 6 6 5.6927 -0.3299 0.0095 7 6 6.8604 0.6225 0.0160 8 6 7.1664 1.0326 1.4335 9 8 6.5019 0.5941 2.3485 10 7 8.1791 1.8857 1.6846 11 6 8.4769 2.2839 3.0627 12 6 9.6624 3.2510 3.0693 13 6 9.9730 3.6673 4.5084 14 6 11.1412 4.6195 4.5149 15 1 11.6149 4.8992 3.5856 16 6 11.6058 5.1325 5.7073 17 7 12.6248 5.9638 5.7130 18 14 10.7867 4.6480 7.3148 19 1 11.4501 3.4379 7.8633 20 1 10.9082 5.7630 8.2880 21 1 9.3509 4.3579 7.0711 22 6 5.7463 -1.6688 0.0076 23 8 4.5036 -2.1822 0.0021 24 6 3.5785 -1.2018 0.0007 25 6 2.1892 -1.1979 -0.0057 26 6 1.4299 -2.4997 -0.0114 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3634 0.8899 0.5138 30 1 1.6445 2.1358 0.0004 31 1 4.0906 2.1649 0.0099 32 1 7.7322 0.1314 -0.4163 33 1 6.6121 1.5060 -0.5721 34 1 8.7113 2.2356 0.9529 35 1 7.6053 2.7752 3.4952 36 1 8.7251 1.4004 3.6507 37 1 10.5342 2.7601 2.6365 38 1 9.4138 4.1346 2.4814 39 1 9.1012 4.1584 4.9407 40 1 10.2215 2.7840 5.0966 41 1 12.9514 6.3250 6.5519 42 1 6.6559 -2.2512 0.0094 43 1 1.2428 -2.8156 1.0148 44 1 0.4802 -2.3641 -0.5288 45 1 2.0177 -3.2609 -0.5245 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171509458.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:37 Heat of formation + Delta-G solvation = -35.143965 kcal Electronic energy + Delta-G solvation = -24780.434735 eV Core-core repulsion = 21149.302537 eV Total energy + Delta-G solvation = -3631.132198 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 2.95 seconds Orbital eigenvalues (eV) -42.65729 -39.49956 -38.69398 -35.62017 -34.56628 -33.33169 -32.57691 -31.65420 -31.42547 -28.77001 -27.66989 -26.69236 -26.29886 -23.12570 -22.74062 -21.42343 -20.89873 -20.32744 -19.38823 -17.39737 -17.22965 -17.04976 -16.70972 -16.13932 -15.81917 -15.51434 -15.27470 -14.66131 -14.33605 -14.25405 -14.16879 -13.74336 -13.44654 -13.11185 -13.09063 -12.89007 -12.75598 -12.66788 -12.43581 -12.16855 -11.94303 -11.88225 -11.81902 -11.66395 -11.09633 -10.98416 -10.90240 -10.23815 -10.04405 -9.93863 -9.77689 -9.49625 -9.24272 -8.86772 -8.69806 -8.56941 -8.15841 -6.07795 -4.06549 0.71717 1.19112 2.08526 2.61942 2.72164 3.30213 3.34368 3.38005 3.42365 3.54726 4.24805 4.29791 4.43174 4.56415 4.57632 4.75762 4.85970 4.90129 4.99157 5.13841 5.22925 5.24206 5.26278 5.27017 5.32869 5.35161 5.46066 5.55549 5.56548 5.63909 5.64969 5.80310 6.00111 6.07237 6.17528 6.23255 6.29514 6.34676 6.42883 6.47512 6.68609 6.77931 6.99826 7.21091 7.34521 7.62564 7.75249 8.33793 8.48783 8.95896 9.54500 11.05367 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.023030 B = 0.002138 C = 0.002070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.532500 B =13091.934356 C =13523.973108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.068 4.068 3 C -0.131 4.131 4 C -0.069 4.069 5 C -0.113 4.113 6 C -0.155 4.155 7 C -0.070 4.070 8 C 0.506 3.494 9 O -0.535 6.535 10 N -0.728 5.728 11 C 0.115 3.885 12 C -0.113 4.113 13 C -0.012 4.012 14 C -0.522 4.522 15 H 0.072 0.928 16 C 0.066 3.934 17 N -0.903 5.903 18 Si 0.880 3.120 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.265 1.265 22 C 0.016 3.984 23 O -0.191 6.191 24 C 0.056 3.944 25 C -0.077 4.077 26 C -0.112 4.112 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.128 0.872 31 H 0.124 0.876 32 H 0.105 0.895 33 H 0.103 0.897 34 H 0.400 0.600 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.018 0.982 40 H 0.014 0.986 41 H 0.263 0.737 42 H 0.206 0.794 43 H 0.071 0.929 44 H 0.071 0.929 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.979 -15.334 -17.435 31.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.068 4.068 3 C -0.149 4.149 4 C -0.087 4.087 5 C -0.114 4.114 6 C -0.157 4.157 7 C -0.110 4.110 8 C 0.292 3.708 9 O -0.411 6.411 10 N -0.379 5.379 11 C -0.008 4.008 12 C -0.151 4.151 13 C -0.050 4.050 14 C -0.560 4.560 15 H 0.090 0.910 16 C -0.135 4.135 17 N -0.541 5.541 18 Si 0.707 3.293 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.189 1.189 22 C -0.049 4.049 23 O -0.092 6.092 24 C 0.009 3.991 25 C -0.077 4.077 26 C -0.169 4.169 27 H 0.091 0.909 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.146 0.854 31 H 0.142 0.858 32 H 0.123 0.877 33 H 0.122 0.878 34 H 0.234 0.766 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.037 0.963 40 H 0.032 0.968 41 H 0.073 0.927 42 H 0.223 0.777 43 H 0.090 0.910 44 H 0.090 0.910 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -22.424 -15.819 -16.630 32.088 hybrid contribution 0.350 0.265 0.670 0.801 sum -22.074 -15.553 -15.960 31.367 Atomic orbital electron populations 1.20811 0.90471 1.03156 1.02465 1.19490 0.96032 0.91403 0.99882 1.20624 0.93773 0.97590 1.02930 1.20228 0.93721 0.96421 0.98304 1.19670 0.92396 0.93979 1.05371 1.20392 0.92480 0.93719 1.09075 1.19993 0.96290 0.99445 0.95296 1.20529 0.80275 0.79070 0.90968 1.90728 1.49320 1.54480 1.46568 1.46172 1.33892 1.47399 1.10460 1.21635 0.99068 0.98793 0.81330 1.21701 0.95144 0.97209 1.01021 1.19507 0.97376 0.96562 0.91507 1.21092 1.13908 1.26082 0.94920 0.91003 1.25034 0.94673 0.94597 0.99212 1.69911 1.25509 1.31724 1.27003 0.86777 0.80763 0.78238 0.83525 1.20244 1.21348 1.18910 1.23674 0.85887 0.93350 1.02006 1.83974 1.14237 1.34699 1.76307 1.19311 0.90428 0.85770 1.03618 1.18535 0.87760 0.96164 1.05250 1.20748 0.99819 0.93721 1.02589 0.90933 0.91137 0.91162 0.85417 0.85761 0.87705 0.87836 0.76646 0.91902 0.91882 0.92115 0.92097 0.96331 0.96770 0.92690 0.77703 0.91030 0.90980 0.91461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.71 9.16 36.00 0.33 -0.38 16 2 C -0.07 -0.65 5.88 -104.58 -0.61 -1.27 16 3 C -0.13 -1.31 9.62 -39.94 -0.38 -1.70 16 4 C -0.07 -0.79 10.05 -39.69 -0.40 -1.19 16 5 C -0.11 -1.46 6.38 -105.16 -0.67 -2.13 16 6 C -0.15 -1.81 4.85 -102.67 -0.50 -2.30 16 7 C -0.07 -0.67 6.25 -29.04 -0.18 -0.85 16 8 C 0.51 6.95 7.82 -10.98 -0.09 6.87 16 9 O -0.53 -9.86 16.03 5.55 0.09 -9.77 16 10 N -0.73 -9.49 5.56 -60.29 -0.33 -9.83 16 11 C 0.11 1.88 5.67 -4.04 -0.02 1.86 16 12 C -0.11 -2.07 5.27 -26.74 -0.14 -2.22 16 13 C -0.01 -0.27 4.04 -27.88 -0.11 -0.38 16 14 C -0.52 -14.67 9.66 -34.44 -0.33 -15.00 16 15 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 16 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 17 N -0.90 -27.68 13.96 55.43 0.77 -26.91 16 18 Si 0.88 21.78 27.47 -169.99 -4.67 17.12 16 19 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 21 H -0.26 -6.33 6.54 56.52 0.37 -5.96 16 22 C 0.02 0.17 11.89 29.24 0.35 0.52 16 23 O -0.19 -2.35 10.58 3.91 0.04 -2.31 16 24 C 0.06 0.71 7.09 -38.47 -0.27 0.44 16 25 C -0.08 -0.82 5.89 -104.50 -0.62 -1.44 16 26 C -0.11 -0.89 9.17 36.01 0.33 -0.56 16 27 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.07 0.39 6.68 -51.93 -0.35 0.04 16 29 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 30 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 31 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 32 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.40 3.99 8.47 -40.82 -0.35 3.64 16 35 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.02 0.44 7.20 -51.93 -0.37 0.06 16 40 H 0.01 0.33 7.57 -51.93 -0.39 -0.07 16 41 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 42 H 0.21 1.36 8.06 -52.49 -0.42 0.94 16 43 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 44 H 0.07 0.43 6.70 -51.93 -0.35 0.08 16 45 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 LS Contribution 376.92 15.07 5.68 5.68 Total: -1.00 -35.67 376.92 -8.73 -44.40 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: -6.88 Total: -0.47 kcal Atomic # 6 Polarization: -14.49 SS G_CDS: -3.42 Total: -17.91 kcal Atomic # 7 Polarization: -37.17 SS G_CDS: 0.44 Total: -36.73 kcal Atomic # 8 Polarization: -12.21 SS G_CDS: 0.13 Total: -12.08 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.67 Total: 17.12 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.67 -8.73 -44.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171509458.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.251 kcal (2) G-P(sol) polarization free energy of solvation -35.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.95 seconds