Wall clock time and date at job start Tue Mar 31 2020 11:24:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38744 * 119.65549 * 2 1 4 4 C 1.36741 * 120.41547 * 179.74308 * 3 2 1 5 5 C 1.39407 * 119.71923 * 0.25449 * 4 3 2 6 6 C 1.46776 * 134.37054 * 179.97438 * 5 4 3 7 7 C 1.50696 * 126.90746 * 0.02562 * 6 5 4 8 8 C 1.50702 * 109.47161 * 84.99927 * 7 6 5 9 9 O 1.21283 * 120.00320 * 0.02562 * 8 7 6 10 10 N 1.34777 * 120.00054 * 179.97438 * 8 7 6 11 11 C 1.46501 * 120.00129 * 180.02562 * 10 8 7 12 12 C 1.52999 * 109.47515 * 180.02562 * 11 10 8 13 13 C 1.52993 * 109.47419 * 179.97438 * 12 11 10 14 14 C 1.50706 * 109.47132 * 179.97438 * 13 12 11 15 15 H 1.07995 * 119.99715 * 359.97438 * 14 13 12 16 16 C 1.37878 * 119.99999 * 180.02562 * 14 13 12 17 17 N 1.31516 * 120.00068 * 180.02562 * 16 14 13 18 18 Si 1.86802 * 119.99820 * 359.97438 * 16 14 13 19 19 H 1.48499 * 109.47227 * 90.00630 * 18 16 14 20 20 H 1.48505 * 109.47025 * 210.00020 * 18 16 14 21 21 H 1.48498 * 109.47538 * 330.00041 * 18 16 14 22 22 C 1.33994 * 106.18660 * 179.97438 * 6 5 4 23 23 O 1.34459 * 110.15123 * 0.02562 * 22 6 5 24 24 C 1.34799 * 110.89002 * 359.97438 * 23 22 6 25 25 C 1.37854 * 119.66211 * 180.27470 * 2 1 3 26 26 C 1.50704 * 120.08560 * 359.97438 * 25 2 1 27 27 H 1.08999 * 109.46831 * 90.00427 * 1 2 3 28 28 H 1.09006 * 109.47311 * 209.99882 * 1 2 3 29 29 H 1.08999 * 109.47631 * 330.00048 * 1 2 3 30 30 H 1.08002 * 119.79400 * 0.02562 * 3 2 1 31 31 H 1.08001 * 120.14113 * 180.28191 * 4 3 2 32 32 H 1.09001 * 109.47076 * 204.99718 * 7 6 5 33 33 H 1.08999 * 109.47545 * 325.00240 * 7 6 5 34 34 H 0.97004 * 120.00200 * 359.97438 * 10 8 7 35 35 H 1.09001 * 109.46693 * 299.99816 * 11 10 8 36 36 H 1.08994 * 109.47684 * 59.99796 * 11 10 8 37 37 H 1.09005 * 109.46719 * 300.00022 * 12 11 10 38 38 H 1.09002 * 109.46928 * 59.99459 * 12 11 10 39 39 H 1.09001 * 109.46962 * 299.99687 * 13 12 11 40 40 H 1.09002 * 109.47292 * 59.99952 * 13 12 11 41 41 H 0.96997 * 119.99766 * 179.97438 * 17 16 14 42 42 H 1.08002 * 124.92585 * 179.97438 * 22 6 5 43 43 H 1.08996 * 109.47259 * 270.28998 * 26 25 2 44 44 H 1.08997 * 109.46914 * 30.29460 * 26 25 2 45 45 H 1.09002 * 109.46795 * 150.29010 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1934 1.2057 0.0000 4 6 3.5607 1.2238 0.0053 5 6 4.2678 0.0224 0.0053 6 6 5.6927 -0.3299 0.0095 7 6 6.8604 0.6225 0.0160 8 6 7.1664 1.0326 1.4335 9 8 6.5019 0.5941 2.3485 10 7 8.1791 1.8857 1.6846 11 6 8.4769 2.2839 3.0627 12 6 9.6624 3.2510 3.0693 13 6 9.9730 3.6673 4.5084 14 6 11.1412 4.6195 4.5149 15 1 11.6149 4.8992 3.5856 16 6 11.6058 5.1325 5.7073 17 7 12.6248 5.9638 5.7130 18 14 10.7867 4.6480 7.3148 19 1 11.4501 3.4379 7.8633 20 1 10.9082 5.7630 8.2880 21 1 9.3509 4.3579 7.0711 22 6 5.7463 -1.6688 0.0076 23 8 4.5036 -2.1822 0.0021 24 6 3.5785 -1.2018 0.0007 25 6 2.1892 -1.1979 -0.0057 26 6 1.4299 -2.4997 -0.0114 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3634 0.8899 0.5138 30 1 1.6445 2.1358 0.0004 31 1 4.0906 2.1649 0.0099 32 1 7.7322 0.1314 -0.4163 33 1 6.6121 1.5060 -0.5721 34 1 8.7113 2.2356 0.9529 35 1 7.6053 2.7752 3.4952 36 1 8.7251 1.4004 3.6507 37 1 10.5342 2.7601 2.6365 38 1 9.4138 4.1346 2.4814 39 1 9.1012 4.1584 4.9407 40 1 10.2215 2.7840 5.0966 41 1 12.9514 6.3250 6.5519 42 1 6.6559 -2.2512 0.0094 43 1 1.2428 -2.8156 1.0148 44 1 0.4802 -2.3641 -0.5288 45 1 2.0177 -3.2609 -0.5245 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171509458.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:34 Heat of formation + Delta-G solvation = -57.380113 kcal Electronic energy + Delta-G solvation = -24781.398967 eV Core-core repulsion = 21149.302537 eV Total energy + Delta-G solvation = -3632.096430 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 3.90 seconds Orbital eigenvalues (eV) -43.45576 -40.63134 -39.42700 -37.03632 -35.40217 -35.13318 -33.53811 -33.06631 -32.31150 -29.90164 -28.50907 -28.04067 -26.95489 -24.66002 -23.67443 -22.24962 -22.14873 -21.69740 -20.33649 -18.98304 -18.16985 -18.01527 -17.91703 -17.03578 -16.87321 -16.75402 -16.30890 -16.05688 -15.59461 -15.34633 -14.85495 -14.80120 -14.60831 -14.48707 -14.07288 -13.83651 -13.62950 -13.61256 -13.52117 -13.40109 -12.96922 -12.75907 -12.72107 -12.63910 -12.54165 -12.40114 -11.92936 -11.79057 -11.69772 -11.60238 -11.33994 -11.06978 -10.77211 -10.53476 -10.06940 -9.50259 -8.92690 -8.30383 -6.34008 -0.05541 0.38079 1.27148 1.35364 1.37220 1.48817 1.67314 1.86537 2.34161 2.35098 2.70306 3.05218 3.50304 3.55199 3.84160 3.91663 3.95968 4.09273 4.16287 4.19475 4.26815 4.28408 4.41357 4.50138 4.58054 4.59700 4.70129 4.73999 4.83877 4.84978 4.86555 4.89279 4.92693 5.03425 5.09834 5.20463 5.31426 5.40089 5.42301 5.49151 5.51501 5.54928 5.56570 5.64313 5.74577 6.20127 6.26557 6.62154 6.74157 7.30453 7.31201 8.85851 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.023030 B = 0.002138 C = 0.002070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.532500 B =13091.934356 C =13523.973108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.073 4.073 3 C -0.135 4.135 4 C -0.091 4.091 5 C -0.140 4.140 6 C -0.177 4.177 7 C -0.058 4.058 8 C 0.507 3.493 9 O -0.586 6.586 10 N -0.717 5.717 11 C 0.128 3.872 12 C -0.099 4.099 13 C -0.013 4.013 14 C -0.529 4.529 15 H 0.039 0.961 16 C 0.004 3.996 17 N -0.949 5.949 18 Si 0.946 3.054 19 H -0.267 1.267 20 H -0.284 1.284 21 H -0.250 1.250 22 C 0.014 3.986 23 O -0.204 6.204 24 C 0.026 3.974 25 C -0.091 4.091 26 C -0.109 4.109 27 H 0.088 0.912 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.150 0.850 31 H 0.130 0.870 32 H 0.143 0.857 33 H 0.125 0.875 34 H 0.417 0.583 35 H 0.051 0.949 36 H 0.054 0.946 37 H 0.067 0.933 38 H 0.065 0.935 39 H 0.018 0.982 40 H 0.018 0.982 41 H 0.266 0.734 42 H 0.241 0.759 43 H 0.074 0.926 44 H 0.094 0.906 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.652 -16.357 -18.076 33.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.073 4.073 3 C -0.153 4.153 4 C -0.109 4.109 5 C -0.141 4.141 6 C -0.179 4.179 7 C -0.098 4.098 8 C 0.295 3.705 9 O -0.466 6.466 10 N -0.369 5.369 11 C 0.003 3.997 12 C -0.137 4.137 13 C -0.051 4.051 14 C -0.567 4.567 15 H 0.058 0.942 16 C -0.193 4.193 17 N -0.590 5.590 18 Si 0.770 3.230 19 H -0.192 1.192 20 H -0.210 1.210 21 H -0.174 1.174 22 C -0.051 4.051 23 O -0.105 6.105 24 C -0.021 4.021 25 C -0.092 4.092 26 C -0.166 4.166 27 H 0.106 0.894 28 H 0.098 0.902 29 H 0.098 0.902 30 H 0.168 0.832 31 H 0.148 0.852 32 H 0.161 0.839 33 H 0.143 0.857 34 H 0.254 0.746 35 H 0.069 0.931 36 H 0.073 0.927 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.037 0.963 40 H 0.037 0.963 41 H 0.075 0.925 42 H 0.257 0.743 43 H 0.093 0.907 44 H 0.113 0.887 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -24.090 -16.839 -17.319 34.115 hybrid contribution 0.878 0.615 0.796 1.336 sum -23.212 -16.224 -16.523 32.787 Atomic orbital electron populations 1.20888 0.87971 1.04125 1.03714 1.19935 0.97856 0.90852 0.98685 1.20990 0.93524 0.98867 1.01874 1.20468 0.94633 0.96423 0.99367 1.20071 0.93483 0.94549 1.06034 1.20714 0.92627 0.94565 1.09988 1.20036 0.97030 1.00268 0.92440 1.21247 0.79134 0.77926 0.92230 1.90711 1.51012 1.56311 1.48524 1.45983 1.34119 1.47221 1.09612 1.21242 0.97505 0.97712 0.83204 1.21472 0.96292 0.97957 0.97981 1.19478 0.95298 0.95501 0.94864 1.21458 1.14976 1.26598 0.93711 0.94242 1.25977 0.95344 0.94658 1.03288 1.70053 1.27371 1.33391 1.28140 0.85715 0.80385 0.78153 0.78752 1.19248 1.20974 1.17372 1.24409 0.86267 0.93728 1.00656 1.83951 1.14921 1.35109 1.76548 1.19762 0.91405 0.86006 1.04941 1.18999 0.87499 0.97782 1.04916 1.20785 1.00428 0.92325 1.03027 0.89379 0.90224 0.90179 0.83215 0.85204 0.83933 0.85733 0.74583 0.93099 0.92719 0.91446 0.91636 0.96344 0.96349 0.92510 0.74343 0.90727 0.88742 0.91849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.14 9.16 71.23 0.65 -0.49 16 2 C -0.07 -1.33 5.88 -19.84 -0.12 -1.44 16 3 C -0.13 -2.59 9.62 22.04 0.21 -2.38 16 4 C -0.09 -2.10 10.05 22.20 0.22 -1.87 16 5 C -0.14 -3.63 6.38 -20.21 -0.13 -3.76 16 6 C -0.18 -3.97 4.85 -18.60 -0.09 -4.06 16 7 C -0.06 -0.98 6.25 29.10 0.18 -0.80 16 8 C 0.51 13.14 7.82 87.66 0.69 13.83 16 9 O -0.59 -21.42 16.03 -3.04 -0.05 -21.47 16 10 N -0.72 -17.28 5.56 -463.06 -2.57 -19.85 16 11 C 0.13 4.02 5.67 86.38 0.49 4.51 16 12 C -0.10 -3.52 5.27 30.59 0.16 -3.36 16 13 C -0.01 -0.61 4.04 29.85 0.12 -0.49 16 14 C -0.53 -29.97 9.66 25.60 0.25 -29.72 16 15 H 0.04 2.42 7.99 -2.91 -0.02 2.39 16 16 C 0.00 0.25 5.47 84.65 0.46 0.71 16 17 N -0.95 -59.17 13.96 21.45 0.30 -58.87 16 18 Si 0.95 44.61 27.47 68.60 1.88 46.49 16 19 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 20 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 21 H -0.25 -11.10 6.54 99.48 0.65 -10.45 16 22 C 0.01 0.28 11.89 66.85 0.79 1.07 16 23 O -0.20 -5.03 10.58 -8.93 -0.09 -5.12 16 24 C 0.03 0.66 7.09 22.99 0.16 0.82 16 25 C -0.09 -1.93 5.89 -19.79 -0.12 -2.05 16 26 C -0.11 -1.62 9.17 71.24 0.65 -0.97 16 27 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.08 0.68 6.68 -2.38 -0.02 0.67 16 29 H 0.08 0.68 8.08 -2.39 -0.02 0.66 16 30 H 0.15 2.05 8.06 -2.91 -0.02 2.02 16 31 H 0.13 2.64 8.06 -2.91 -0.02 2.62 16 32 H 0.14 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.12 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.42 7.17 8.47 -92.70 -0.79 6.39 16 35 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.07 2.30 8.14 -2.38 -0.02 2.28 16 38 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 39 H 0.02 0.84 7.20 -2.39 -0.02 0.82 16 40 H 0.02 0.82 7.57 -2.39 -0.02 0.80 16 41 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 42 H 0.24 2.67 8.06 -2.91 -0.02 2.65 16 43 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 44 H 0.09 0.93 6.70 -2.39 -0.02 0.91 16 45 H 0.06 0.97 8.09 -2.39 -0.02 0.95 16 Total: -1.00 -79.62 376.92 4.22 -75.41 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: 0.15 Total: 13.86 kcal Atomic # 6 Polarization: -35.04 SS G_CDS: 4.60 Total: -30.44 kcal Atomic # 7 Polarization: -76.45 SS G_CDS: -2.27 Total: -78.72 kcal Atomic # 8 Polarization: -26.45 SS G_CDS: -0.14 Total: -26.59 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 1.88 Total: 46.49 kcal Total: -79.62 4.22 -75.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171509458.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.026 kcal (2) G-P(sol) polarization free energy of solvation -79.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.90 seconds