Wall clock time and date at job start Tue Mar 31 2020 10:39:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99381 * 2 1 4 4 H 1.48504 * 109.47340 * 269.99636 * 3 2 1 5 5 H 1.48499 * 109.47369 * 29.99970 * 3 2 1 6 6 H 1.48500 * 109.47145 * 149.99968 * 3 2 1 7 7 C 1.37873 * 120.00668 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99686 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00488 * 179.97438 * 7 2 1 10 10 C 1.52995 * 109.47442 * 180.02562 * 9 7 2 11 11 O 1.42896 * 109.47138 * 180.02562 * 10 9 7 12 12 C 1.35898 * 117.00134 * 179.97438 * 11 10 9 13 13 C 1.38818 * 120.01738 * 359.97438 * 12 11 10 14 14 C 1.38167 * 120.08198 * 180.02562 * 13 12 11 15 15 C 1.38172 * 120.12563 * 359.97438 * 14 13 12 16 16 C 1.38886 * 120.04091 * 0.02562 * 15 14 13 17 17 N 1.39923 * 120.04029 * 180.02562 * 16 15 14 18 18 C 1.34772 * 119.99948 * 33.32458 * 17 16 15 19 19 O 1.21295 * 120.00086 * 5.27186 * 18 17 16 20 20 C 1.50699 * 119.99891 * 185.26998 * 18 17 16 21 21 H 1.09001 * 115.55065 * 325.72204 * 20 18 17 22 22 C 1.53001 * 117.49661 * 111.38983 * 20 18 17 23 23 C 1.53003 * 117.49938 * 180.02562 * 20 18 17 24 24 H 1.08993 * 117.49965 * 145.02485 * 23 20 18 25 25 C 1.53002 * 117.49883 * 359.97438 * 23 20 18 26 26 C 1.53001 * 117.49441 * 128.74599 * 25 23 20 27 27 C 1.53004 * 117.49443 * 60.09144 * 25 23 20 28 28 C 1.38580 * 120.02577 * 180.02562 * 12 11 10 29 29 H 0.96997 * 120.00737 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.46757 * 60.00138 * 9 7 2 31 31 H 1.08995 * 109.47019 * 300.00819 * 9 7 2 32 32 H 1.09000 * 109.47131 * 60.00246 * 10 9 7 33 33 H 1.08998 * 109.47305 * 300.00797 * 10 9 7 34 34 H 1.07993 * 119.95468 * 0.02562 * 13 12 11 35 35 H 1.08000 * 119.93451 * 180.27634 * 14 13 12 36 36 H 1.08006 * 119.97595 * 179.97438 * 15 14 13 37 37 H 0.96996 * 119.99941 * 213.31741 * 17 16 15 38 38 H 1.09001 * 117.50086 * 214.98060 * 22 20 18 39 39 H 1.09004 * 117.50252 * 359.97438 * 22 20 18 40 40 H 1.08998 * 115.55386 * 274.42275 * 25 23 20 41 41 H 1.09000 * 117.49909 * 0.02562 * 26 25 23 42 42 H 1.09003 * 117.49559 * 145.02284 * 26 25 23 43 43 H 1.09002 * 117.49938 * 214.98184 * 27 25 23 44 44 H 1.09001 * 117.49822 * 359.97438 * 27 25 23 45 45 H 1.08007 * 120.06094 * 359.96012 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4966 2.0466 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4404 0.7000 7 6 2.0047 -1.1939 0.0005 8 1 1.4647 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0000 10 6 4.0217 -2.6363 0.0001 11 8 5.4507 -2.6362 0.0001 12 6 6.0678 -3.8470 0.0008 13 6 5.3122 -5.0115 0.0019 14 6 5.9382 -6.2432 0.0031 15 6 7.3178 -6.3200 0.0027 16 6 8.0788 -5.1581 0.0015 17 7 9.4759 -5.2359 0.0005 18 6 10.0940 -6.2474 -0.6406 19 8 9.4461 -7.0358 -1.2963 20 6 11.5902 -6.3988 -0.5430 21 1 12.1540 -5.4679 -0.4828 22 6 12.1293 -7.6026 0.2323 23 6 12.2326 -7.5669 -1.2941 24 1 13.2191 -7.4045 -1.7280 25 6 11.3066 -8.4921 -2.0863 26 6 11.6663 -8.7690 -3.5474 27 6 10.4762 -7.8675 -3.2094 28 6 7.4517 -3.9200 0.0014 29 1 -0.4851 0.8400 -0.0004 30 1 3.8752 -0.6795 0.8895 31 1 3.8746 -0.6805 -0.8904 32 1 3.6581 -3.1503 -0.8897 33 1 3.6587 -3.1500 0.8902 34 1 4.2338 -4.9546 0.0018 35 1 5.3481 -7.1477 -0.0005 36 1 7.8047 -7.2841 0.0040 37 1 9.9994 -4.5617 0.4612 38 1 13.0480 -7.4639 0.8023 39 1 11.4018 -8.2849 0.6722 40 1 10.8535 -9.3036 -1.5169 41 1 12.5627 -8.2924 -3.9441 42 1 11.4494 -9.7627 -3.9394 43 1 9.4769 -8.2684 -3.3791 44 1 10.5893 -6.7975 -3.3835 45 1 8.0412 -3.0150 0.0007 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176782831.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:39:03 Heat of formation + Delta-G solvation = 6.756019 kcal Electronic energy + Delta-G solvation = -24960.842182 eV Core-core repulsion = 21331.526903 eV Total energy + Delta-G solvation = -3629.315279 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.98012 -39.70210 -38.25406 -36.84197 -35.35963 -34.57940 -33.33893 -31.14735 -30.00775 -29.08454 -25.66956 -25.00784 -23.88538 -22.76012 -22.50739 -22.04794 -20.95983 -20.35000 -19.76467 -18.28925 -17.47572 -16.82177 -16.14377 -16.04855 -15.59522 -15.55063 -15.45534 -15.11497 -14.71193 -14.48637 -14.14576 -13.55232 -13.47684 -13.18991 -12.90876 -12.82314 -12.54905 -11.98401 -11.82574 -11.79403 -11.54215 -11.50685 -11.36409 -11.24237 -10.93362 -10.79403 -10.39970 -10.37928 -10.19008 -10.06033 -9.95206 -9.82290 -9.36120 -9.29262 -8.63707 -8.36765 -7.82262 -6.14530 -4.15561 1.27646 1.62499 2.27697 2.71708 3.26427 3.27437 3.34687 3.39731 3.74116 3.78828 3.93195 4.18062 4.35986 4.37814 4.41701 4.60260 4.83775 4.93287 4.96700 5.03327 5.19151 5.19420 5.24361 5.31579 5.32538 5.41940 5.49083 5.51813 5.61782 5.69845 5.76107 5.91197 5.91244 5.93089 6.04390 6.13658 6.27109 6.32384 6.40501 6.52674 6.65381 6.89845 7.09370 7.21470 7.21617 7.60998 7.88434 7.94369 8.37574 8.86193 9.45571 10.97927 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.029394 B = 0.002126 C = 0.002094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.332059 B =13167.602089 C =13368.997868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.072 3.928 3 Si 0.881 3.119 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.263 1.263 7 C -0.527 4.527 8 H 0.075 0.925 9 C -0.009 4.009 10 C 0.073 3.927 11 O -0.319 6.319 12 C 0.163 3.837 13 C -0.223 4.223 14 C -0.062 4.062 15 C -0.167 4.167 16 C 0.181 3.819 17 N -0.670 5.670 18 C 0.537 3.463 19 O -0.496 6.496 20 C -0.191 4.191 21 H 0.124 0.876 22 C -0.144 4.144 23 C -0.085 4.085 24 H 0.114 0.886 25 C -0.115 4.115 26 C -0.199 4.199 27 C -0.120 4.120 28 C -0.190 4.190 29 H 0.266 0.734 30 H 0.028 0.972 31 H 0.023 0.977 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.133 0.867 35 H 0.125 0.875 36 H 0.130 0.870 37 H 0.409 0.591 38 H 0.106 0.894 39 H 0.101 0.899 40 H 0.102 0.898 41 H 0.088 0.912 42 H 0.089 0.911 43 H 0.092 0.908 44 H 0.083 0.917 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.161 -16.133 -0.415 31.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.131 4.131 3 Si 0.708 3.292 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.188 1.188 7 C -0.565 4.565 8 H 0.093 0.907 9 C -0.046 4.046 10 C -0.001 4.001 11 O -0.232 6.232 12 C 0.115 3.885 13 C -0.242 4.242 14 C -0.080 4.080 15 C -0.188 4.188 16 C 0.087 3.913 17 N -0.315 5.315 18 C 0.325 3.675 19 O -0.370 6.370 20 C -0.212 4.212 21 H 0.142 0.858 22 C -0.182 4.182 23 C -0.104 4.104 24 H 0.132 0.868 25 C -0.133 4.133 26 C -0.236 4.236 27 C -0.157 4.157 28 C -0.211 4.211 29 H 0.076 0.924 30 H 0.046 0.954 31 H 0.041 0.959 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.150 0.850 35 H 0.143 0.857 36 H 0.148 0.852 37 H 0.244 0.756 38 H 0.125 0.875 39 H 0.120 0.880 40 H 0.120 0.880 41 H 0.106 0.894 42 H 0.108 0.892 43 H 0.111 0.889 44 H 0.102 0.898 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 26.649 -16.407 -0.890 31.307 hybrid contribution 0.371 1.309 0.281 1.389 sum 27.020 -15.098 -0.609 30.958 Atomic orbital electron populations 1.69890 1.06260 1.27221 1.50157 1.24938 0.94772 0.99214 0.94132 0.86754 0.80427 0.83294 0.78757 1.20066 1.21176 1.18780 1.20837 0.88317 0.94952 1.52354 0.90715 1.19586 0.96933 0.90239 0.97878 1.23097 0.74453 1.01950 1.00646 1.86105 1.24141 1.25810 1.87172 1.18765 0.91479 0.85265 0.92980 1.21404 1.00858 0.92227 1.09738 1.20791 0.93872 0.97069 0.96302 1.20872 0.93535 0.97543 1.06820 1.17261 0.82013 0.93207 0.98803 1.43492 1.05057 1.29075 1.53887 1.19769 0.88736 0.80625 0.78382 1.90789 1.66639 1.41920 1.37611 1.22234 0.92804 0.96223 1.09961 0.85792 1.23057 1.02789 0.97923 0.94406 1.21834 0.98922 0.96342 0.93287 0.86793 1.21491 1.01243 1.00673 0.89877 1.23242 1.00793 1.01561 0.98024 1.22580 0.95007 0.98022 1.00091 1.19973 0.92290 0.96660 1.12209 0.92439 0.95414 0.95855 0.92411 0.92383 0.84951 0.85725 0.85205 0.75558 0.87533 0.88018 0.87967 0.89386 0.89250 0.88908 0.89834 0.85253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.21 13.96 55.43 0.77 -26.43 16 2 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 3 Si 0.88 21.51 27.47 -169.99 -4.67 16.84 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.26 -6.23 6.54 56.52 0.37 -5.86 16 7 C -0.53 -14.80 9.66 -34.44 -0.33 -15.13 16 8 H 0.07 2.22 7.99 -52.48 -0.42 1.80 16 9 C -0.01 -0.21 4.41 -27.89 -0.12 -0.34 16 10 C 0.07 1.49 4.68 37.16 0.17 1.66 16 11 O -0.32 -6.18 10.13 -19.42 -0.20 -6.38 16 12 C 0.16 2.73 6.68 -39.24 -0.26 2.47 16 13 C -0.22 -3.46 9.04 -39.39 -0.36 -3.81 16 14 C -0.06 -0.84 10.03 -39.63 -0.40 -1.24 16 15 C -0.17 -2.26 8.65 -39.37 -0.34 -2.60 16 16 C 0.18 2.34 6.28 -83.72 -0.53 1.82 16 17 N -0.67 -6.49 5.34 -9.88 -0.05 -6.54 16 18 C 0.54 5.31 7.19 -10.99 -0.08 5.23 16 19 O -0.50 -6.19 9.23 5.54 0.05 -6.14 16 20 C -0.19 -1.28 6.18 -91.77 -0.57 -1.84 16 21 H 0.12 0.56 8.14 -51.93 -0.42 0.14 16 22 C -0.14 -0.81 9.96 -26.71 -0.27 -1.08 16 23 C -0.09 -0.58 5.87 -90.60 -0.53 -1.11 16 24 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 25 C -0.11 -0.99 4.47 -90.62 -0.41 -1.39 16 26 C -0.20 -1.59 10.25 -26.69 -0.27 -1.86 16 27 C -0.12 -1.21 7.09 -26.69 -0.19 -1.39 16 28 C -0.19 -2.73 9.90 -39.25 -0.39 -3.12 16 29 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 30 H 0.03 0.67 7.20 -51.93 -0.37 0.30 16 31 H 0.02 0.56 7.57 -51.93 -0.39 0.17 16 32 H 0.06 1.15 7.66 -51.93 -0.40 0.75 16 33 H 0.06 1.14 7.66 -51.93 -0.40 0.75 16 34 H 0.13 2.02 6.29 -52.49 -0.33 1.69 16 35 H 0.12 1.41 8.06 -52.49 -0.42 0.98 16 36 H 0.13 1.72 6.41 -52.48 -0.34 1.38 16 37 H 0.41 2.72 8.82 -40.82 -0.36 2.36 16 38 H 0.11 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.09 1.05 8.06 -51.93 -0.42 0.63 16 44 H 0.08 0.91 7.97 -51.93 -0.41 0.50 16 45 H 0.13 1.66 8.06 -52.48 -0.42 1.24 16 LS Contribution 369.73 15.07 5.57 5.57 Total: -1.00 -31.89 369.73 -10.30 -42.19 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -6.81 Total: 2.67 kcal Atomic # 6 Polarization: -16.82 SS G_CDS: -4.96 Total: -21.78 kcal Atomic # 7 Polarization: -33.69 SS G_CDS: 0.72 Total: -32.97 kcal Atomic # 8 Polarization: -12.37 SS G_CDS: -0.15 Total: -12.52 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.67 Total: 16.84 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.89 -10.30 -42.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176782831.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.943 kcal (2) G-P(sol) polarization free energy of solvation -31.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.187 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds