Wall clock time and date at job start Tue Mar 31 2020 10:39:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99381 * 2 1 4 4 H 1.48504 * 109.47340 * 269.99636 * 3 2 1 5 5 H 1.48499 * 109.47369 * 29.99970 * 3 2 1 6 6 H 1.48500 * 109.47145 * 149.99968 * 3 2 1 7 7 C 1.37873 * 120.00668 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99686 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00488 * 179.97438 * 7 2 1 10 10 C 1.52995 * 109.47442 * 180.02562 * 9 7 2 11 11 O 1.42896 * 109.47138 * 180.02562 * 10 9 7 12 12 C 1.35898 * 117.00134 * 179.97438 * 11 10 9 13 13 C 1.38818 * 120.01738 * 359.97438 * 12 11 10 14 14 C 1.38167 * 120.08198 * 180.02562 * 13 12 11 15 15 C 1.38172 * 120.12563 * 359.97438 * 14 13 12 16 16 C 1.38886 * 120.04091 * 0.02562 * 15 14 13 17 17 N 1.39923 * 120.04029 * 180.02562 * 16 15 14 18 18 C 1.34772 * 119.99948 * 33.32458 * 17 16 15 19 19 O 1.21295 * 120.00086 * 5.27186 * 18 17 16 20 20 C 1.50699 * 119.99891 * 185.26998 * 18 17 16 21 21 H 1.09001 * 115.55065 * 325.72204 * 20 18 17 22 22 C 1.53001 * 117.49661 * 111.38983 * 20 18 17 23 23 C 1.53003 * 117.49938 * 180.02562 * 20 18 17 24 24 H 1.08993 * 117.49965 * 145.02485 * 23 20 18 25 25 C 1.53002 * 117.49883 * 359.97438 * 23 20 18 26 26 C 1.53001 * 117.49441 * 128.74599 * 25 23 20 27 27 C 1.53004 * 117.49443 * 60.09144 * 25 23 20 28 28 C 1.38580 * 120.02577 * 180.02562 * 12 11 10 29 29 H 0.96997 * 120.00737 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.46757 * 60.00138 * 9 7 2 31 31 H 1.08995 * 109.47019 * 300.00819 * 9 7 2 32 32 H 1.09000 * 109.47131 * 60.00246 * 10 9 7 33 33 H 1.08998 * 109.47305 * 300.00797 * 10 9 7 34 34 H 1.07993 * 119.95468 * 0.02562 * 13 12 11 35 35 H 1.08000 * 119.93451 * 180.27634 * 14 13 12 36 36 H 1.08006 * 119.97595 * 179.97438 * 15 14 13 37 37 H 0.96996 * 119.99941 * 213.31741 * 17 16 15 38 38 H 1.09001 * 117.50086 * 214.98060 * 22 20 18 39 39 H 1.09004 * 117.50252 * 359.97438 * 22 20 18 40 40 H 1.08998 * 115.55386 * 274.42275 * 25 23 20 41 41 H 1.09000 * 117.49909 * 0.02562 * 26 25 23 42 42 H 1.09003 * 117.49559 * 145.02284 * 26 25 23 43 43 H 1.09002 * 117.49938 * 214.98184 * 27 25 23 44 44 H 1.09001 * 117.49822 * 359.97438 * 27 25 23 45 45 H 1.08007 * 120.06094 * 359.96012 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4966 2.0466 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4404 0.7000 7 6 2.0047 -1.1939 0.0005 8 1 1.4647 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0000 10 6 4.0217 -2.6363 0.0001 11 8 5.4507 -2.6362 0.0001 12 6 6.0678 -3.8470 0.0008 13 6 5.3122 -5.0115 0.0019 14 6 5.9382 -6.2432 0.0031 15 6 7.3178 -6.3200 0.0027 16 6 8.0788 -5.1581 0.0015 17 7 9.4759 -5.2359 0.0005 18 6 10.0940 -6.2474 -0.6406 19 8 9.4461 -7.0358 -1.2963 20 6 11.5902 -6.3988 -0.5430 21 1 12.1540 -5.4679 -0.4828 22 6 12.1293 -7.6026 0.2323 23 6 12.2326 -7.5669 -1.2941 24 1 13.2191 -7.4045 -1.7280 25 6 11.3066 -8.4921 -2.0863 26 6 11.6663 -8.7690 -3.5474 27 6 10.4762 -7.8675 -3.2094 28 6 7.4517 -3.9200 0.0014 29 1 -0.4851 0.8400 -0.0004 30 1 3.8752 -0.6795 0.8895 31 1 3.8746 -0.6805 -0.8904 32 1 3.6581 -3.1503 -0.8897 33 1 3.6587 -3.1500 0.8902 34 1 4.2338 -4.9546 0.0018 35 1 5.3481 -7.1477 -0.0005 36 1 7.8047 -7.2841 0.0040 37 1 9.9994 -4.5617 0.4612 38 1 13.0480 -7.4639 0.8023 39 1 11.4018 -8.2849 0.6722 40 1 10.8535 -9.3036 -1.5169 41 1 12.5627 -8.2924 -3.9441 42 1 11.4494 -9.7627 -3.9394 43 1 9.4769 -8.2684 -3.3791 44 1 10.5893 -6.7975 -3.3835 45 1 8.0412 -3.0150 0.0007 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000176782831.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:39:02 Heat of formation + Delta-G solvation = -10.765233 kcal Electronic energy + Delta-G solvation = -24961.601960 eV Core-core repulsion = 21331.526903 eV Total energy + Delta-G solvation = -3630.075057 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.82893 -40.83913 -39.19318 -37.87090 -35.97848 -35.62324 -35.28966 -32.94680 -31.27963 -30.26028 -27.20910 -26.06798 -24.48170 -23.82321 -23.52507 -23.07247 -22.13574 -21.51612 -20.51698 -19.62651 -18.71542 -18.17911 -17.18037 -17.03524 -16.95762 -16.84183 -16.41209 -16.17975 -15.89873 -15.59598 -15.20049 -14.83751 -14.59356 -14.44634 -14.30040 -14.15449 -13.43271 -13.36077 -13.29023 -12.84767 -12.65606 -12.40952 -12.32575 -12.21044 -12.06044 -11.97398 -11.83492 -11.79012 -11.65912 -11.43734 -11.22136 -11.02254 -10.82005 -10.69670 -10.03993 -9.47169 -8.98956 -8.35116 -6.42091 0.20302 0.45511 1.36148 1.37359 1.50099 1.51243 1.85777 2.32950 2.43178 2.69452 2.81331 2.99747 3.16041 3.55423 3.82277 3.86195 3.89581 4.00393 4.14056 4.17418 4.22167 4.22473 4.28040 4.30809 4.40943 4.47518 4.52018 4.59532 4.64500 4.74096 4.86929 4.89876 4.97166 5.09389 5.14195 5.23766 5.25648 5.28723 5.29961 5.34550 5.36745 5.40673 5.48635 5.53451 5.89014 6.15702 6.44790 6.48206 6.63717 7.18674 7.22995 8.80531 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.029394 B = 0.002126 C = 0.002094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.332059 B =13167.602089 C =13368.997868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.012 3.988 3 Si 0.950 3.050 4 H -0.265 1.265 5 H -0.279 1.279 6 H -0.249 1.249 7 C -0.537 4.537 8 H 0.041 0.959 9 C -0.006 4.006 10 C 0.086 3.914 11 O -0.331 6.331 12 C 0.133 3.867 13 C -0.236 4.236 14 C -0.061 4.061 15 C -0.169 4.169 16 C 0.188 3.812 17 N -0.662 5.662 18 C 0.531 3.469 19 O -0.526 6.526 20 C -0.191 4.191 21 H 0.153 0.847 22 C -0.130 4.130 23 C -0.093 4.093 24 H 0.135 0.865 25 C -0.113 4.113 26 C -0.185 4.185 27 C -0.137 4.137 28 C -0.190 4.190 29 H 0.270 0.730 30 H 0.030 0.970 31 H 0.027 0.973 32 H 0.057 0.943 33 H 0.060 0.940 34 H 0.128 0.872 35 H 0.146 0.854 36 H 0.133 0.867 37 H 0.425 0.575 38 H 0.135 0.865 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.103 0.897 42 H 0.093 0.907 43 H 0.070 0.930 44 H 0.072 0.928 45 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.949 -15.907 0.011 34.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.186 4.186 3 Si 0.773 3.227 4 H -0.190 1.190 5 H -0.205 1.205 6 H -0.172 1.172 7 C -0.575 4.575 8 H 0.060 0.940 9 C -0.044 4.044 10 C 0.012 3.988 11 O -0.245 6.245 12 C 0.087 3.913 13 C -0.256 4.256 14 C -0.079 4.079 15 C -0.189 4.189 16 C 0.093 3.907 17 N -0.308 5.308 18 C 0.320 3.680 19 O -0.401 6.401 20 C -0.211 4.211 21 H 0.171 0.829 22 C -0.167 4.167 23 C -0.111 4.111 24 H 0.153 0.847 25 C -0.131 4.131 26 C -0.222 4.222 27 C -0.175 4.175 28 C -0.211 4.211 29 H 0.079 0.921 30 H 0.048 0.952 31 H 0.045 0.955 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.146 0.854 35 H 0.164 0.836 36 H 0.151 0.849 37 H 0.264 0.736 38 H 0.153 0.847 39 H 0.108 0.892 40 H 0.108 0.892 41 H 0.121 0.879 42 H 0.111 0.889 43 H 0.088 0.912 44 H 0.091 0.909 45 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 30.481 -16.194 -0.451 34.518 hybrid contribution -0.780 1.046 0.127 1.311 sum 29.701 -15.148 -0.324 33.342 Atomic orbital electron populations 1.70027 1.08120 1.28513 1.51545 1.25904 0.95656 1.03395 0.93675 0.85662 0.79470 0.78208 0.79383 1.19035 1.20475 1.17224 1.21112 0.90561 0.93875 1.51942 0.94044 1.19444 0.94319 0.92675 0.97916 1.22694 0.75728 0.99606 1.00806 1.86018 1.22858 1.27444 1.88164 1.19051 0.92473 0.84609 0.95146 1.21455 1.00733 0.92723 1.10644 1.21028 0.94288 0.97210 0.95419 1.21043 0.93617 0.98006 1.06271 1.17317 0.83686 0.92452 0.97273 1.43503 1.03725 1.29718 1.53848 1.20456 0.90197 0.79841 0.77494 1.90797 1.67650 1.42901 1.38766 1.22299 0.90383 0.97826 1.10624 0.82908 1.23158 1.03359 0.96463 0.93753 1.21939 0.99215 0.95972 0.94010 0.84722 1.21529 1.00976 1.00470 0.90172 1.23296 1.00033 1.01213 0.97631 1.22397 0.94770 0.97608 1.02680 1.20129 0.91462 0.97826 1.11696 0.92106 0.95189 0.95502 0.92486 0.92196 0.85446 0.83603 0.84886 0.73623 0.84706 0.89186 0.89168 0.87884 0.88857 0.91166 0.90901 0.83736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.37 13.96 21.45 0.30 -58.07 16 2 C 0.01 0.69 5.47 84.65 0.46 1.15 16 3 Si 0.95 44.06 27.47 68.60 1.88 45.95 16 4 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 5 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 6 H -0.25 -10.86 6.54 99.48 0.65 -10.21 16 7 C -0.54 -30.86 9.66 25.60 0.25 -30.61 16 8 H 0.04 2.57 7.99 -2.91 -0.02 2.55 16 9 C -0.01 -0.29 4.41 29.85 0.13 -0.16 16 10 C 0.09 3.58 4.68 71.98 0.34 3.91 16 11 O -0.33 -12.75 10.13 -92.41 -0.94 -13.69 16 12 C 0.13 4.45 6.68 22.49 0.15 4.60 16 13 C -0.24 -7.36 9.04 22.39 0.20 -7.16 16 14 C -0.06 -1.63 10.03 22.24 0.22 -1.41 16 15 C -0.17 -4.42 8.65 22.41 0.19 -4.22 16 16 C 0.19 4.61 6.28 38.14 0.24 4.85 16 17 N -0.66 -11.42 5.34 -303.55 -1.62 -13.04 16 18 C 0.53 9.54 7.19 87.66 0.63 10.17 16 19 O -0.53 -12.82 9.23 -3.08 -0.03 -12.85 16 20 C -0.19 -1.95 6.18 -11.54 -0.07 -2.02 16 21 H 0.15 0.71 8.14 -2.39 -0.02 0.69 16 22 C -0.13 -1.03 9.96 30.60 0.30 -0.73 16 23 C -0.09 -0.99 5.87 -10.78 -0.06 -1.05 16 24 H 0.14 0.91 8.14 -2.39 -0.02 0.89 16 25 C -0.11 -1.82 4.47 -10.79 -0.05 -1.87 16 26 C -0.18 -2.71 10.25 30.62 0.31 -2.40 16 27 C -0.14 -2.76 7.09 30.62 0.22 -2.55 16 28 C -0.19 -5.25 9.90 22.48 0.22 -5.02 16 29 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 30 H 0.03 1.42 7.20 -2.39 -0.02 1.41 16 31 H 0.03 1.27 7.57 -2.39 -0.02 1.25 16 32 H 0.06 2.33 7.66 -2.39 -0.02 2.31 16 33 H 0.06 2.42 7.66 -2.39 -0.02 2.40 16 34 H 0.13 4.01 6.29 -2.91 -0.02 3.99 16 35 H 0.15 3.17 8.06 -2.91 -0.02 3.14 16 36 H 0.13 3.42 6.41 -2.91 -0.02 3.40 16 37 H 0.43 4.44 8.82 -92.71 -0.82 3.63 16 38 H 0.13 0.36 8.14 -2.39 -0.02 0.34 16 39 H 0.09 0.96 8.14 -2.38 -0.02 0.94 16 40 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 41 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 42 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 43 H 0.07 1.69 8.06 -2.39 -0.02 1.67 16 44 H 0.07 1.59 7.97 -2.39 -0.02 1.57 16 45 H 0.14 3.45 8.06 -2.91 -0.02 3.43 16 Total: -1.00 -70.43 369.73 3.41 -67.02 By element: Atomic # 1 Polarization: 19.08 SS G_CDS: 0.12 Total: 19.20 kcal Atomic # 6 Polarization: -38.22 SS G_CDS: 3.69 Total: -34.52 kcal Atomic # 7 Polarization: -69.79 SS G_CDS: -1.32 Total: -71.11 kcal Atomic # 8 Polarization: -25.57 SS G_CDS: -0.96 Total: -26.54 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 1.88 Total: 45.95 kcal Total: -70.43 3.41 -67.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176782831.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.255 kcal (2) G-P(sol) polarization free energy of solvation -70.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds