Wall clock time and date at job start Tue Mar 31 2020 12:42:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 N 1.36863 * 125.02424 * 2 1 4 4 H 0.97001 * 125.00355 * 0.05811 * 3 2 1 5 5 C 1.37382 * 109.99053 * 180.02562 * 3 2 1 6 6 C 1.39384 * 133.23786 * 180.27528 * 5 3 2 7 7 C 1.36296 * 120.24167 * 180.20308 * 6 5 3 8 8 C 1.40266 * 120.66178 * 359.48481 * 7 6 5 9 9 C 1.47520 * 119.97664 * 180.27740 * 8 7 6 10 10 O 1.21504 * 119.99963 * 180.02562 * 9 8 7 11 11 O 1.34736 * 120.00345 * 0.02562 * 9 8 7 12 12 C 1.45197 * 117.00077 * 179.97438 * 11 9 8 13 13 C 1.53006 * 109.47204 * 179.97438 * 12 11 9 14 14 C 1.52993 * 109.47213 * 300.00227 * 13 12 11 15 15 C 1.53004 * 109.46857 * 60.00112 * 13 12 11 16 16 C 1.50698 * 109.47172 * 180.02562 * 13 12 11 17 17 H 1.08008 * 119.99950 * 0.02562 * 16 13 12 18 18 C 1.37879 * 120.00154 * 180.02562 * 16 13 12 19 19 N 1.31511 * 119.99501 * 359.97438 * 18 16 13 20 20 Si 1.86794 * 120.00264 * 180.02562 * 18 16 13 21 21 H 1.48507 * 109.47266 * 59.99524 * 20 18 16 22 22 H 1.48501 * 109.47396 * 179.97438 * 20 18 16 23 23 H 1.48505 * 109.46964 * 299.99921 * 20 18 16 24 24 C 1.39215 * 120.04199 * 0.26112 * 8 7 6 25 25 C 1.39247 * 119.38852 * 359.97438 * 24 8 7 26 26 C 1.34193 * 125.02022 * 180.02562 * 2 1 3 27 27 C 1.50698 * 126.54033 * 359.94937 * 26 2 1 28 28 H 1.08999 * 109.47161 * 269.96291 * 1 2 3 29 29 H 1.09008 * 109.47166 * 29.95826 * 1 2 3 30 30 H 1.08999 * 109.47643 * 149.95783 * 1 2 3 31 31 H 1.08003 * 119.88154 * 359.96552 * 6 5 3 32 32 H 1.08002 * 119.67239 * 179.77192 * 7 6 5 33 33 H 1.08998 * 109.47213 * 300.00275 * 12 11 9 34 34 H 1.08997 * 109.47263 * 60.00274 * 12 11 9 35 35 H 1.09001 * 109.47026 * 59.99831 * 14 13 12 36 36 H 1.08998 * 109.47206 * 179.97438 * 14 13 12 37 37 H 1.09008 * 109.47173 * 300.00079 * 14 13 12 38 38 H 1.08998 * 109.47050 * 60.00005 * 15 13 12 39 39 H 1.08998 * 109.46961 * 180.02562 * 15 13 12 40 40 H 1.08993 * 109.47137 * 300.00306 * 15 13 12 41 41 H 0.97005 * 119.99933 * 180.02562 * 19 18 16 42 42 H 1.07995 * 120.30306 * 179.97438 * 24 8 7 43 43 H 1.08995 * 109.47131 * 270.02194 * 27 26 2 44 44 H 1.08994 * 109.47514 * 30.02135 * 27 26 2 45 45 H 1.09000 * 109.47204 * 150.01891 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2924 1.1208 0.0000 4 1 1.9611 2.0325 0.0008 5 6 3.6192 0.7644 -0.0006 6 6 4.8047 1.4974 0.0041 7 6 6.0078 0.8570 -0.0022 8 6 6.0723 -0.5442 -0.0025 9 6 7.3826 -1.2218 -0.0031 10 8 7.4389 -2.4355 -0.0038 11 8 8.5170 -0.4948 -0.0029 12 6 9.7701 -1.2284 -0.0029 13 6 10.9390 -0.2412 -0.0033 14 6 10.8631 0.6387 -1.2526 15 6 10.8635 0.6391 1.2459 16 6 12.2395 -1.0025 -0.0040 17 1 12.2330 -2.0826 -0.0046 18 6 13.4378 -0.3204 -0.0039 19 7 13.4456 0.9947 -0.0036 20 14 15.0498 -1.2641 -0.0055 21 1 15.1228 -2.1173 -1.2188 22 1 16.1844 -0.3060 -0.0057 23 1 15.1238 -2.1195 1.2063 24 6 4.9004 -1.2958 -0.0019 25 6 3.6702 -0.6435 -0.0004 26 6 2.2770 -1.0990 -0.0005 27 6 1.8003 -2.5286 -0.0001 28 1 -0.3633 -0.0007 1.0277 29 1 -0.3634 0.8904 -0.5132 30 1 -0.3634 -0.8896 -0.5145 31 1 4.7699 2.5769 0.0087 32 1 6.9207 1.4341 -0.0023 33 1 9.8240 -1.8556 0.8869 34 1 9.8241 -1.8552 -0.8931 35 1 9.9224 1.1894 -1.2525 36 1 11.6956 1.3423 -1.2526 37 1 10.9169 0.0116 -2.1426 38 1 10.9175 0.0122 2.1359 39 1 11.6959 1.3427 1.2454 40 1 9.9228 1.1897 1.2460 41 1 14.2886 1.4747 -0.0039 42 1 4.9451 -2.3748 -0.0025 43 1 1.6858 -2.8731 1.0277 44 1 0.8410 -2.5919 -0.5135 45 1 2.5295 -3.1549 -0.5141 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184795210.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:44 Heat of formation + Delta-G solvation = -63.833482 kcal Electronic energy + Delta-G solvation = -25561.973712 eV Core-core repulsion = 21929.597443 eV Total energy + Delta-G solvation = -3632.376269 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.46878 -41.31126 -38.54946 -37.74202 -36.58086 -34.25406 -33.28220 -32.13559 -31.29412 -29.15119 -27.59718 -27.56202 -27.16102 -26.70794 -24.68158 -22.58079 -21.95080 -20.70345 -20.17835 -18.91061 -18.58843 -17.75071 -17.70122 -17.30251 -16.75725 -16.39793 -15.98505 -15.55499 -15.01500 -14.98007 -14.79429 -14.61999 -14.15126 -13.89878 -13.81310 -13.68982 -13.59244 -13.51214 -13.32669 -13.11240 -12.85026 -12.82487 -12.65238 -12.56446 -12.38611 -12.30221 -12.13027 -11.84109 -11.71981 -11.66925 -11.27092 -11.18382 -10.73774 -10.63434 -10.39433 -9.29094 -8.60690 -8.03765 -6.21749 -0.26923 0.19081 1.44848 1.45331 1.52469 1.56821 1.63741 1.78741 2.08950 2.46247 2.82107 3.19313 3.59987 3.72251 3.77203 4.04730 4.17337 4.24613 4.27158 4.28267 4.39800 4.42582 4.60104 4.73922 4.75937 4.77286 4.80764 4.89122 4.96492 5.05575 5.09582 5.13807 5.20127 5.21452 5.24210 5.31661 5.36148 5.41919 5.58091 5.59434 5.64746 5.65952 5.79229 6.03362 6.08441 6.18290 6.37873 6.63169 6.76005 6.84042 7.45703 8.95820 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.035311 B = 0.002482 C = 0.002359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.759871 B =11277.092634 C =11868.194355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.084 3.916 3 N -0.574 5.574 4 H 0.433 0.567 5 C 0.121 3.879 6 C -0.129 4.129 7 C -0.056 4.056 8 C -0.168 4.168 9 C 0.501 3.499 10 O -0.553 6.553 11 O -0.345 6.345 12 C 0.096 3.904 13 C 0.062 3.938 14 C -0.118 4.118 15 C -0.119 4.119 16 C -0.535 4.535 17 H 0.048 0.952 18 C 0.028 3.972 19 N -0.899 5.899 20 Si 0.953 3.047 21 H -0.275 1.275 22 H -0.280 1.280 23 H -0.275 1.275 24 C -0.007 4.007 25 C -0.140 4.140 26 C -0.189 4.189 27 C -0.078 4.078 28 H 0.091 0.909 29 H 0.087 0.913 30 H 0.097 0.903 31 H 0.160 0.840 32 H 0.143 0.857 33 H 0.048 0.952 34 H 0.048 0.952 35 H 0.033 0.967 36 H 0.065 0.935 37 H 0.018 0.982 38 H 0.018 0.982 39 H 0.065 0.935 40 H 0.033 0.967 41 H 0.263 0.737 42 H 0.127 0.873 43 H 0.068 0.932 44 H 0.087 0.913 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.781 3.119 0.008 28.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.023 4.023 3 N -0.178 5.178 4 H 0.273 0.727 5 C 0.011 3.989 6 C -0.149 4.149 7 C -0.076 4.076 8 C -0.171 4.171 9 C 0.349 3.651 10 O -0.446 6.446 11 O -0.260 6.260 12 C 0.023 3.977 13 C 0.062 3.938 14 C -0.176 4.176 15 C -0.176 4.176 16 C -0.573 4.573 17 H 0.066 0.934 18 C -0.172 4.172 19 N -0.537 5.537 20 Si 0.779 3.221 21 H -0.201 1.201 22 H -0.205 1.205 23 H -0.200 1.200 24 C -0.025 4.025 25 C -0.145 4.145 26 C -0.195 4.195 27 C -0.135 4.135 28 H 0.109 0.891 29 H 0.105 0.895 30 H 0.115 0.885 31 H 0.178 0.822 32 H 0.161 0.839 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.052 0.948 36 H 0.084 0.916 37 H 0.037 0.963 38 H 0.037 0.963 39 H 0.084 0.916 40 H 0.052 0.948 41 H 0.072 0.928 42 H 0.145 0.855 43 H 0.087 0.913 44 H 0.106 0.894 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -28.688 3.055 0.005 28.851 hybrid contribution 1.566 -0.460 0.009 1.632 sum -27.122 2.595 0.014 27.246 Atomic orbital electron populations 1.20626 0.84415 1.05235 1.04464 1.20677 0.95031 0.84486 1.02153 1.41706 1.02814 1.09496 1.63825 0.72664 1.18521 0.85942 0.93625 1.00836 1.19942 0.88173 1.00924 1.05862 1.20895 0.98998 0.92095 0.95612 1.18827 0.88670 0.94805 1.14783 1.21699 0.86042 0.85507 0.71847 1.90750 1.88765 1.16393 1.48697 1.86546 1.15061 1.41385 1.83038 1.23294 0.79630 0.94991 0.99796 1.18261 0.89246 0.92171 0.94105 1.21623 0.99902 0.99625 0.96471 1.21622 0.99906 0.99626 0.96469 1.21165 0.91097 0.92690 1.52346 0.93359 1.25513 1.01597 0.95762 0.94361 1.69929 1.26902 1.06827 1.50011 0.85696 0.79338 0.78494 0.78569 1.20057 1.20547 1.20043 1.20598 0.89426 0.99787 0.92737 1.19232 0.93448 0.93019 1.08809 1.20399 0.89241 0.96744 1.13087 1.20184 1.01536 0.89523 1.02297 0.89056 0.89468 0.88488 0.82236 0.83949 0.93370 0.93380 0.94799 0.91626 0.96255 0.96253 0.91625 0.94794 0.92786 0.85484 0.91292 0.89408 0.92790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.44 10.18 71.23 0.72 0.28 16 2 C 0.08 1.15 7.08 40.85 0.29 1.44 16 3 N -0.57 -7.91 6.05 -175.79 -1.06 -8.97 16 4 H 0.43 2.86 8.96 -92.71 -0.83 2.03 16 5 C 0.12 2.57 7.27 39.20 0.28 2.85 16 6 C -0.13 -2.72 10.00 22.09 0.22 -2.50 16 7 C -0.06 -1.56 9.53 22.31 0.21 -1.34 16 8 C -0.17 -5.58 5.87 -20.10 -0.12 -5.70 16 9 C 0.50 20.41 7.89 70.27 0.55 20.96 16 10 O -0.55 -25.10 16.12 19.82 0.32 -24.78 16 11 O -0.34 -14.81 8.10 -56.46 -0.46 -15.27 16 12 C 0.10 4.57 4.27 71.98 0.31 4.88 16 13 C 0.06 3.18 0.58 -52.93 -0.03 3.15 16 14 C -0.12 -5.85 8.11 71.98 0.58 -5.27 16 15 C -0.12 -5.85 8.11 71.98 0.58 -5.27 16 16 C -0.53 -29.53 8.01 25.60 0.21 -29.33 16 17 H 0.05 2.67 7.74 -2.91 -0.02 2.65 16 18 C 0.03 1.51 5.15 84.66 0.44 1.94 16 19 N -0.90 -49.56 9.35 21.45 0.20 -49.36 16 20 Si 0.95 43.41 29.54 68.60 2.03 45.43 16 21 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 22 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 23 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 24 C -0.01 -0.20 9.65 22.75 0.22 0.02 16 25 C -0.14 -3.55 6.34 -20.21 -0.13 -3.68 16 26 C -0.19 -3.63 6.32 -18.61 -0.12 -3.75 16 27 C -0.08 -1.16 10.17 71.24 0.72 -0.43 16 28 H 0.09 0.29 8.14 -2.39 -0.02 0.27 16 29 H 0.09 0.15 8.14 -2.38 -0.02 0.13 16 30 H 0.10 0.32 7.04 -2.39 -0.02 0.30 16 31 H 0.16 2.25 8.06 -2.91 -0.02 2.23 16 32 H 0.14 3.91 7.58 -2.91 -0.02 3.89 16 33 H 0.05 2.32 8.14 -2.39 -0.02 2.31 16 34 H 0.05 2.32 8.14 -2.39 -0.02 2.30 16 35 H 0.03 1.51 7.68 -2.39 -0.02 1.49 16 36 H 0.06 3.48 6.07 -2.39 -0.01 3.47 16 37 H 0.02 0.91 8.14 -2.38 -0.02 0.89 16 38 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.06 3.48 6.07 -2.39 -0.01 3.47 16 40 H 0.03 1.51 7.68 -2.39 -0.02 1.49 16 41 H 0.26 13.83 8.31 -92.70 -0.77 13.06 16 42 H 0.13 3.91 7.64 -2.91 -0.02 3.89 16 43 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 44 H 0.09 0.82 7.06 -2.39 -0.02 0.81 16 45 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 Total: -1.00 -68.48 370.02 6.15 -62.33 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: 0.17 Total: 12.38 kcal Atomic # 6 Polarization: -26.71 SS G_CDS: 4.95 Total: -21.76 kcal Atomic # 7 Polarization: -57.47 SS G_CDS: -0.86 Total: -58.33 kcal Atomic # 8 Polarization: -39.91 SS G_CDS: -0.14 Total: -40.05 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.43 kcal Total: -68.48 6.15 -62.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184795210.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.506 kcal (2) G-P(sol) polarization free energy of solvation -68.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds