Wall clock time and date at job start Tue Mar 31 2020 10:55:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 115.55290 * 2 1 4 4 C 1.53007 * 109.47039 * 34.32932 * 3 2 1 5 5 N 1.46500 * 109.46992 * 180.02562 * 4 3 2 6 6 C 1.34770 * 120.00149 * 179.97438 * 5 4 3 7 7 O 1.21722 * 119.99697 * 0.02562 * 6 5 4 8 8 C 1.46250 * 120.00046 * 179.97438 * 6 5 4 9 9 C 1.35031 * 119.99722 * 180.02562 * 8 6 5 10 10 C 1.46959 * 119.99896 * 180.27394 * 9 8 6 11 11 C 1.40027 * 120.10017 * 359.45143 * 10 9 8 12 12 C 1.37601 * 119.89863 * 179.78912 * 11 10 9 13 13 C 1.39178 * 120.09610 * 0.48118 * 12 11 10 14 14 O 1.35575 * 119.89259 * 179.76441 * 13 12 11 15 15 C 1.34788 * 116.99533 * 174.42515 * 14 13 12 16 16 H 1.08001 * 120.00124 * 5.05799 * 15 14 13 17 17 C 1.38720 * 119.99795 * 185.06035 * 15 14 13 18 18 N 1.31507 * 119.99773 * 359.97438 * 17 15 14 19 19 Si 1.86791 * 119.99984 * 179.97438 * 17 15 14 20 20 H 1.48507 * 109.47157 * 89.99783 * 19 17 15 21 21 H 1.48507 * 109.47385 * 209.99705 * 19 17 15 22 22 H 1.48501 * 109.47369 * 329.99939 * 19 17 15 23 23 C 1.39170 * 120.20621 * 359.74800 * 13 12 11 24 24 C 1.37600 * 120.10262 * 0.02562 * 23 13 12 25 25 C 1.53001 * 117.51541 * 145.70302 * 2 1 3 26 26 C 1.53001 * 60.00036 * 107.47542 * 25 2 1 27 27 H 1.08999 * 109.47341 * 85.58157 * 1 2 3 28 28 H 1.08994 * 109.47468 * 205.58505 * 1 2 3 29 29 H 1.09002 * 109.46559 * 325.58379 * 1 2 3 30 30 H 1.08999 * 109.47139 * 274.32929 * 3 2 1 31 31 H 1.08995 * 109.47040 * 154.33102 * 3 2 1 32 32 H 1.08993 * 109.46896 * 60.00372 * 4 3 2 33 33 H 1.08995 * 109.46915 * 300.00307 * 4 3 2 34 34 H 0.96999 * 119.99522 * 359.97438 * 5 4 3 35 35 H 1.07990 * 120.00180 * 359.97438 * 8 6 5 36 36 H 1.08000 * 120.00105 * 359.97438 * 9 8 6 37 37 H 1.08005 * 120.04947 * 359.97438 * 11 10 9 38 38 H 1.07995 * 119.95289 * 180.22906 * 12 11 10 39 39 H 0.97008 * 119.99947 * 180.02562 * 18 17 15 40 40 H 1.08006 * 119.94848 * 179.97438 * 23 13 12 41 41 H 1.07997 * 120.05056 * 180.02562 * 24 23 13 42 42 H 1.08997 * 117.49705 * 214.96972 * 25 2 1 43 43 H 1.08998 * 117.49834 * 359.97438 * 25 2 1 44 44 H 1.09000 * 117.50027 * 252.50642 * 26 25 2 45 45 H 1.09005 * 117.49503 * 107.48832 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1900 1.3803 0.0000 4 6 1.3352 2.3543 0.8135 5 7 1.9668 3.6761 0.8130 6 6 1.3876 4.7000 1.4707 7 8 0.3399 4.5263 2.0655 8 6 2.0185 6.0195 1.4706 9 6 1.4384 7.0451 2.1300 10 6 2.0691 8.3725 2.1250 11 6 3.2776 8.5731 1.4466 12 6 3.8623 9.8187 1.4410 13 6 3.2596 10.8758 2.1165 14 8 3.8418 12.1001 2.1122 15 6 3.1529 13.1072 2.6851 16 1 2.2212 12.9042 3.1921 17 6 3.6409 14.4043 2.6234 18 7 4.7757 14.6512 2.0065 19 14 2.6860 15.8000 3.4167 20 1 3.1286 15.9650 4.8247 21 1 2.9354 17.0584 2.6687 22 1 1.2348 15.4862 3.3877 23 6 2.0609 10.6799 2.7960 24 6 1.4665 9.4389 2.8033 25 6 2.2369 -1.1210 0.7646 26 6 2.2364 -1.1208 -0.7654 27 1 -0.3634 0.0792 -1.0246 28 1 -0.3634 -0.9268 0.4438 29 1 -0.3632 0.8478 0.5809 30 1 2.2767 1.7416 -1.0247 31 1 3.1823 1.3086 0.4451 32 1 1.2486 1.9930 1.8382 33 1 0.3429 2.4259 0.3684 34 1 2.8019 3.8144 0.3393 35 1 2.9486 6.1732 0.9439 36 1 0.5084 6.8912 2.6571 37 1 3.7484 7.7522 0.9262 38 1 4.7924 9.9753 0.9150 39 1 5.1171 15.5583 1.9637 40 1 1.5970 11.5030 3.3192 41 1 0.5362 9.2880 3.3305 42 1 3.1720 -0.8751 1.2676 43 1 1.6119 -1.8585 1.2682 44 1 1.6111 -1.8583 -1.2686 45 1 3.1713 -0.8748 -1.2689 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000280128360.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:25 Heat of formation + Delta-G solvation = -28.837581 kcal Electronic energy + Delta-G solvation = -23799.365675 eV Core-core repulsion = 20168.506942 eV Total energy + Delta-G solvation = -3630.858733 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.92760 -40.62165 -39.30317 -38.48151 -35.92332 -34.72893 -33.99426 -31.97170 -31.63561 -29.67564 -28.86571 -27.50441 -25.41102 -23.93675 -23.53672 -23.19753 -22.03848 -20.80873 -19.94254 -19.46266 -18.83452 -18.17122 -17.15594 -16.55008 -16.49333 -16.36137 -16.15217 -15.88342 -15.61279 -15.39639 -15.17908 -14.87741 -14.61214 -14.41050 -14.10304 -13.86674 -13.59679 -13.31640 -13.19640 -13.10454 -12.96726 -12.70995 -12.58102 -12.55707 -12.23050 -12.19850 -12.12769 -12.03881 -11.21293 -11.11824 -11.10769 -10.88940 -10.57834 -10.48137 -10.04168 -9.88727 -8.67348 -8.51911 -6.18106 -0.23801 0.59007 1.14349 1.36134 1.46127 1.53195 2.15600 2.27900 2.38346 2.85821 2.86912 3.18334 3.42946 3.72054 3.76643 3.88500 3.95448 4.02243 4.09109 4.12154 4.24251 4.31762 4.36759 4.44241 4.48943 4.59004 4.66905 4.81965 4.86787 4.89893 4.95200 5.03415 5.04954 5.07900 5.13919 5.20095 5.20598 5.29422 5.29733 5.34031 5.40075 5.52392 5.59843 5.64420 5.82112 5.97621 6.11054 6.62569 6.92477 7.30431 7.69495 8.70053 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.045818 B = 0.001651 C = 0.001607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.969078 B =16956.275283 C =17424.292394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.135 4.135 3 C -0.084 4.084 4 C 0.121 3.879 5 N -0.716 5.716 6 C 0.547 3.453 7 O -0.597 6.597 8 C -0.245 4.245 9 C 0.014 3.986 10 C -0.170 4.170 11 C -0.038 4.038 12 C -0.207 4.207 13 C 0.129 3.871 14 O -0.220 6.220 15 C -0.418 4.418 16 H 0.105 0.895 17 C -0.018 4.018 18 N -0.913 5.913 19 Si 1.018 2.982 20 H -0.263 1.263 21 H -0.271 1.271 22 H -0.253 1.253 23 C -0.249 4.249 24 C -0.041 4.041 25 C -0.179 4.179 26 C -0.169 4.169 27 H 0.063 0.937 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.054 0.946 33 H 0.062 0.938 34 H 0.416 0.584 35 H 0.153 0.847 36 H 0.124 0.876 37 H 0.161 0.839 38 H 0.123 0.877 39 H 0.275 0.725 40 H 0.124 0.876 41 H 0.144 0.856 42 H 0.097 0.903 43 H 0.095 0.905 44 H 0.098 0.902 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.916 -27.352 -4.728 28.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.136 4.136 3 C -0.121 4.121 4 C -0.002 4.002 5 N -0.368 5.368 6 C 0.339 3.661 7 O -0.481 6.481 8 C -0.265 4.265 9 C -0.006 4.006 10 C -0.171 4.171 11 C -0.055 4.055 12 C -0.226 4.226 13 C 0.077 3.923 14 O -0.125 6.125 15 C -0.494 4.494 16 H 0.123 0.877 17 C -0.216 4.216 18 N -0.550 5.550 19 Si 0.837 3.163 20 H -0.188 1.188 21 H -0.195 1.195 22 H -0.177 1.177 23 C -0.268 4.268 24 C -0.059 4.059 25 C -0.216 4.216 26 C -0.206 4.206 27 H 0.082 0.918 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.102 0.898 31 H 0.099 0.901 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.253 0.747 35 H 0.171 0.829 36 H 0.141 0.859 37 H 0.179 0.821 38 H 0.141 0.859 39 H 0.084 0.916 40 H 0.142 0.858 41 H 0.161 0.839 42 H 0.115 0.885 43 H 0.113 0.887 44 H 0.116 0.884 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -5.277 -27.251 -4.475 28.116 hybrid contribution 0.167 1.017 0.209 1.052 sum -5.110 -26.234 -4.266 27.066 Atomic orbital electron populations 1.21498 0.92147 1.02339 1.02280 1.21394 0.94927 0.90617 1.06623 1.21234 0.98432 0.91675 1.00794 1.21437 0.96922 0.81510 1.00328 1.45791 1.27630 1.09605 1.53754 1.18564 0.83887 0.85752 0.77924 1.90775 1.25380 1.85391 1.46512 1.22780 1.04021 0.91734 1.07988 1.22171 0.96607 0.90052 0.91759 1.18783 0.98174 0.93664 1.06485 1.21295 0.93361 0.95413 0.95450 1.20428 1.03426 0.92353 1.06368 1.20197 0.92190 0.86602 0.93314 1.83887 1.44018 1.14571 1.70010 1.21902 1.06967 0.85582 1.34904 0.87736 1.26596 0.97518 1.00210 0.97318 1.70149 1.20721 1.22464 1.41661 0.84589 0.78271 0.75420 0.77989 1.18768 1.19545 1.17653 1.21199 0.98500 0.99450 1.07674 1.21317 0.98537 0.90819 0.95236 1.23257 1.02541 1.01009 0.94814 1.23101 1.02574 1.00572 0.94312 0.91790 0.92061 0.92148 0.89816 0.90053 0.92781 0.91956 0.74681 0.82911 0.85864 0.82140 0.85871 0.91604 0.85790 0.83864 0.88472 0.88694 0.88357 0.88045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.45 9.49 71.98 0.68 -0.77 16 2 C -0.14 -1.45 2.47 -52.18 -0.13 -1.58 16 3 C -0.08 -0.85 5.52 30.60 0.17 -0.68 16 4 C 0.12 1.93 4.68 86.38 0.40 2.33 16 5 N -0.72 -12.03 5.55 -467.51 -2.60 -14.63 16 6 C 0.55 13.50 7.74 86.33 0.67 14.17 16 7 O -0.60 -19.76 16.23 -4.42 -0.07 -19.83 16 8 C -0.24 -5.53 9.41 23.62 0.22 -5.31 16 9 C 0.01 0.38 9.45 23.82 0.23 0.60 16 10 C -0.17 -5.29 5.87 -20.13 -0.12 -5.40 16 11 C -0.04 -1.16 9.40 22.55 0.21 -0.95 16 12 C -0.21 -8.19 9.97 22.34 0.22 -7.96 16 13 C 0.13 6.15 6.66 22.72 0.15 6.30 16 14 O -0.22 -12.73 9.74 -20.39 -0.20 -12.93 16 15 C -0.42 -23.53 9.48 67.94 0.64 -22.89 16 16 H 0.11 5.38 5.18 -2.91 -0.02 5.37 16 17 C -0.02 -0.97 5.49 84.86 0.47 -0.50 16 18 N -0.91 -54.28 13.67 21.62 0.30 -53.98 16 19 Si 1.02 41.49 29.55 68.60 2.03 43.52 16 20 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 21 H -0.27 -10.63 7.11 99.48 0.71 -9.93 16 22 H -0.25 -9.60 7.11 99.48 0.71 -8.89 16 23 C -0.25 -10.47 9.14 22.34 0.20 -10.26 16 24 C -0.04 -1.40 9.78 22.55 0.22 -1.18 16 25 C -0.18 -1.78 9.82 30.59 0.30 -1.48 16 26 C -0.17 -1.50 9.97 30.60 0.31 -1.20 16 27 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.06 0.64 7.90 -2.39 -0.02 0.63 16 29 H 0.06 0.82 5.59 -2.39 -0.01 0.81 16 30 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.08 0.69 7.90 -2.39 -0.02 0.67 16 32 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.06 1.13 6.45 -2.39 -0.02 1.12 16 34 H 0.42 4.29 8.45 -92.71 -0.78 3.50 16 35 H 0.15 2.54 6.06 -2.92 -0.02 2.52 16 36 H 0.12 3.39 7.52 -2.91 -0.02 3.36 16 37 H 0.16 3.53 6.16 -2.91 -0.02 3.51 16 38 H 0.12 4.72 8.06 -2.91 -0.02 4.69 16 39 H 0.27 14.94 8.31 -92.70 -0.77 14.17 16 40 H 0.12 5.27 5.62 -2.91 -0.02 5.26 16 41 H 0.14 3.98 8.06 -2.91 -0.02 3.96 16 42 H 0.10 0.90 8.05 -2.39 -0.02 0.88 16 43 H 0.09 0.91 8.05 -2.39 -0.02 0.89 16 44 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 45 H 0.10 0.76 8.14 -2.38 -0.02 0.74 16 Total: -1.00 -72.22 378.48 4.54 -67.68 By element: Atomic # 1 Polarization: 26.69 SS G_CDS: 0.23 Total: 26.92 kcal Atomic # 6 Polarization: -41.60 SS G_CDS: 4.85 Total: -36.75 kcal Atomic # 7 Polarization: -66.31 SS G_CDS: -2.30 Total: -68.61 kcal Atomic # 8 Polarization: -32.49 SS G_CDS: -0.27 Total: -32.76 kcal Atomic # 14 Polarization: 41.49 SS G_CDS: 2.03 Total: 43.52 kcal Total: -72.22 4.54 -67.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280128360.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.841 kcal (2) G-P(sol) polarization free energy of solvation -72.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds