Wall clock time and date at job start Tue Mar 31 2020 12:20:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46503 * 109.46965 * 185.00772 * 3 2 1 5 5 C 1.37103 * 119.99902 * 263.92932 * 4 3 2 6 6 H 1.08002 * 119.99350 * 199.75264 * 5 4 3 7 7 C 1.38944 * 120.00062 * 19.74933 * 5 4 3 8 8 N 1.31415 * 120.00023 * 21.75388 * 7 5 4 9 9 Si 1.86799 * 119.99920 * 201.74408 * 7 5 4 10 10 H 1.48502 * 109.46791 * 90.00803 * 9 7 5 11 11 H 1.48507 * 109.47152 * 210.00397 * 9 7 5 12 12 H 1.48501 * 109.47218 * 330.00544 * 9 7 5 13 13 C 1.34776 * 119.99899 * 83.92938 * 4 3 2 14 14 O 1.21285 * 119.99897 * 179.97438 * 13 4 3 15 15 C 1.50706 * 119.99813 * 359.97438 * 13 4 3 16 16 O 1.42895 * 109.46900 * 179.97438 * 15 13 4 17 17 C 1.35899 * 116.99917 * 179.97438 * 16 15 13 18 18 C 1.38749 * 120.05720 * 359.73248 * 17 16 15 19 19 C 1.38124 * 119.94576 * 180.29603 * 18 17 16 20 20 C 1.50703 * 119.97007 * 179.97438 * 19 18 17 21 21 C 1.38283 * 120.05518 * 359.95149 * 19 18 17 22 22 C 1.38243 * 120.11625 * 0.04469 * 21 19 18 23 23 C 1.38175 * 120.04938 * 359.97438 * 22 21 19 24 24 C 1.50705 * 120.02428 * 179.97438 * 23 22 21 25 25 C 1.52991 * 109.47192 * 300.02105 * 24 23 22 26 26 C 1.53006 * 109.46989 * 60.02005 * 24 23 22 27 27 H 4.40640 * 5.51461 * 180.02562 * 4 1 2 28 28 H 1.09006 * 109.47028 * 65.00952 * 3 2 1 29 29 H 1.09001 * 109.47590 * 305.00939 * 3 2 1 30 30 H 0.97001 * 120.00022 * 179.97438 * 8 7 5 31 31 H 1.08999 * 109.46932 * 60.00235 * 15 13 4 32 32 H 1.08997 * 109.47210 * 299.99846 * 15 13 4 33 33 H 1.08003 * 120.02655 * 0.24892 * 18 17 16 34 34 H 1.08997 * 109.46964 * 269.99460 * 20 19 18 35 35 H 1.08998 * 109.47372 * 29.99916 * 20 19 18 36 36 H 1.09003 * 109.46926 * 150.00239 * 20 19 18 37 37 H 1.07998 * 119.94288 * 180.02562 * 21 19 18 38 38 H 1.07991 * 119.98027 * 179.97438 * 22 21 19 39 39 H 1.09000 * 109.47020 * 180.02562 * 24 23 22 40 40 H 1.09000 * 109.47278 * 59.99986 * 25 24 23 41 41 H 1.09001 * 109.47539 * 180.02562 * 25 24 23 42 42 H 1.09000 * 109.47534 * 300.00218 * 25 24 23 43 43 H 1.09002 * 109.47069 * 59.99884 * 26 24 23 44 44 H 1.08994 * 109.46660 * 179.97438 * 26 24 23 45 45 H 1.09000 * 109.47181 * 299.99830 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.3769 0.1206 5 6 3.4803 2.0822 -1.0029 6 1 4.1231 2.9462 -0.9210 7 6 3.0046 1.6854 -2.2466 8 7 1.9239 0.9424 -2.3303 9 14 3.9010 2.2084 -3.7997 10 1 4.9274 1.1922 -4.1447 11 1 2.9288 2.3286 -4.9158 12 1 4.5595 3.5201 -3.5734 13 6 3.2417 1.9495 1.3358 14 8 3.6459 3.0886 1.4357 15 6 2.8602 1.1743 2.5706 16 8 3.0617 1.9901 3.7264 17 6 2.7627 1.4375 4.9314 18 6 2.2799 0.1385 4.9996 19 6 1.9709 -0.4187 6.2251 20 6 1.4459 -1.8294 6.2998 21 6 2.1434 0.3165 7.3835 22 6 2.6244 1.6109 7.3184 23 6 2.9346 2.1730 6.0948 24 6 3.4583 3.5844 6.0244 25 6 2.4246 4.5423 6.6199 26 6 4.7629 3.6844 6.8176 27 1 -1.0502 -0.0004 0.0002 28 1 3.0096 -0.4334 -0.9315 29 1 3.0097 -0.5887 0.8417 30 1 1.5916 0.6657 -3.1985 31 1 3.4800 0.2807 2.6446 32 1 1.8112 0.8847 2.5082 33 1 2.1450 -0.4361 4.0952 34 1 0.3579 -1.8159 6.2363 35 1 1.8510 -2.4122 5.4726 36 1 1.7491 -2.2803 7.2448 37 1 1.9017 -0.1212 8.3408 38 1 2.7579 2.1833 8.2244 39 1 3.6441 3.8515 4.9841 40 1 2.2387 4.2752 7.6602 41 1 2.8032 5.5631 6.5685 42 1 1.4952 4.4710 6.0549 43 1 5.4993 3.0019 6.3934 44 1 5.1418 4.7051 6.7663 45 1 4.5769 3.4174 7.8579 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281510240.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:03 Heat of formation + Delta-G solvation = 6.660023 kcal Electronic energy + Delta-G solvation = -26231.581100 eV Core-core repulsion = 22602.261658 eV Total energy + Delta-G solvation = -3629.319441 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.31512 -38.75529 -37.21273 -35.66398 -35.15547 -32.24717 -31.44602 -31.31297 -30.02633 -28.30756 -27.01987 -26.63968 -26.30947 -24.42138 -22.68816 -21.73896 -20.00339 -19.26950 -17.99613 -17.42445 -16.73026 -16.29973 -15.90442 -15.70004 -15.36415 -14.68710 -14.25147 -14.09188 -13.97555 -13.82300 -13.68738 -13.57830 -13.19177 -13.18396 -12.52929 -12.43471 -12.27390 -12.18268 -12.04225 -11.71532 -11.65255 -11.60060 -11.47800 -11.06812 -10.99890 -10.66280 -10.51018 -10.47079 -10.40343 -10.36309 -9.45843 -9.32747 -9.00947 -8.61896 -8.49029 -7.94771 -7.88876 -6.39915 -3.94799 1.38908 1.57324 3.10966 3.17011 3.23911 3.34316 3.61601 3.80562 3.84312 3.94407 4.15483 4.70273 4.78783 4.91132 4.95540 4.99496 5.10826 5.20183 5.34247 5.35256 5.37670 5.40256 5.52152 5.53424 5.55378 5.65111 5.70692 5.72884 5.79458 5.83262 5.90815 5.92810 6.12515 6.15782 6.19260 6.34442 6.37786 6.49327 6.59784 6.64661 6.74222 6.91925 6.92491 7.50589 7.62484 7.97651 8.34284 8.71645 9.04281 9.24079 9.78194 10.60745 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.015999 B = 0.003671 C = 0.003148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.716340 B = 7626.523330 C = 8891.395717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C -0.122 4.122 3 C 0.230 3.770 4 N -0.435 5.435 5 C -0.316 4.316 6 H 0.106 0.894 7 C 0.034 3.966 8 N -0.859 5.859 9 Si 0.923 3.077 10 H -0.277 1.277 11 H -0.285 1.285 12 H -0.268 1.268 13 C 0.453 3.547 14 O -0.559 6.559 15 C 0.050 3.950 16 O -0.282 6.282 17 C 0.143 3.857 18 C -0.211 4.211 19 C -0.053 4.053 20 C -0.114 4.114 21 C -0.165 4.165 22 C -0.076 4.076 23 C -0.113 4.113 24 C -0.056 4.056 25 C -0.139 4.139 26 C -0.139 4.139 27 H 0.200 0.800 28 H 0.110 0.890 29 H 0.061 0.939 30 H 0.269 0.731 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.128 0.872 34 H 0.070 0.930 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.118 0.882 38 H 0.124 0.876 39 H 0.093 0.907 40 H 0.051 0.949 41 H 0.056 0.944 42 H 0.055 0.945 43 H 0.054 0.946 44 H 0.055 0.945 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.696 -5.339 16.013 16.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.270 4.270 2 C -0.123 4.123 3 C 0.107 3.893 4 N -0.155 5.155 5 C -0.443 4.443 6 H 0.123 0.877 7 C -0.171 4.171 8 N -0.496 5.496 9 Si 0.750 3.250 10 H -0.202 1.202 11 H -0.210 1.210 12 H -0.193 1.193 13 C 0.240 3.760 14 O -0.441 6.441 15 C -0.029 4.029 16 O -0.194 6.194 17 C 0.096 3.904 18 C -0.229 4.229 19 C -0.053 4.053 20 C -0.171 4.171 21 C -0.183 4.183 22 C -0.094 4.094 23 C -0.113 4.113 24 C -0.075 4.075 25 C -0.197 4.197 26 C -0.196 4.196 27 H 0.217 0.783 28 H 0.128 0.872 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.093 0.907 32 H 0.098 0.902 33 H 0.146 0.854 34 H 0.089 0.911 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.136 0.864 38 H 0.142 0.858 39 H 0.111 0.889 40 H 0.070 0.930 41 H 0.075 0.925 42 H 0.074 0.926 43 H 0.073 0.927 44 H 0.074 0.926 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.495 -4.639 15.833 16.505 hybrid contribution -0.245 -0.231 -1.089 1.140 sum -0.739 -4.870 14.743 15.544 Atomic orbital electron populations 1.24307 0.95386 1.01702 1.05585 1.23115 0.94318 0.98702 0.96181 1.18265 0.84444 0.84647 1.01982 1.43599 1.56330 1.10852 1.04739 1.19669 1.28417 1.13573 0.82673 0.87652 1.25321 0.94911 0.97459 0.99441 1.70087 1.17763 1.36176 1.25617 0.85971 0.79111 0.79378 0.80569 1.20241 1.21049 1.19291 1.19514 0.85433 0.87306 0.83725 1.90566 1.49698 1.18124 1.85723 1.22625 1.01644 0.93854 0.84747 1.86173 1.80943 1.40701 1.11572 1.18969 0.94157 0.91460 0.85805 1.21161 1.07572 0.95504 0.98712 1.19642 0.97108 0.96049 0.92509 1.20795 1.01126 0.92560 1.02586 1.20812 1.04868 0.95042 0.97593 1.20732 0.97508 0.94814 0.96358 1.19193 1.04974 0.96712 0.90463 1.19997 0.94771 0.90624 1.02080 1.21820 0.98964 0.98640 1.00237 1.21820 0.96814 1.01587 0.99394 0.78279 0.87170 0.92083 0.92024 0.90733 0.90217 0.85443 0.91122 0.91508 0.91605 0.86380 0.85797 0.88861 0.93002 0.92542 0.92625 0.92654 0.92552 0.93001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -5.03 19.25 29.55 0.57 -4.47 16 2 C -0.12 -2.62 10.75 -37.12 -0.40 -3.02 16 3 C 0.23 4.87 4.91 -6.83 -0.03 4.84 16 4 N -0.43 -10.79 2.60 -117.93 -0.31 -11.10 16 5 C -0.32 -8.56 9.28 -14.93 -0.14 -8.70 16 6 H 0.11 3.01 7.42 -52.49 -0.39 2.62 16 7 C 0.03 0.86 4.83 -17.47 -0.08 0.77 16 8 N -0.86 -22.05 9.59 55.50 0.53 -21.52 16 9 Si 0.92 20.09 29.60 -169.99 -5.03 15.06 16 10 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 11 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 12 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 13 C 0.45 11.15 7.64 -10.98 -0.08 11.07 16 14 O -0.56 -15.92 16.17 -14.36 -0.23 -16.15 16 15 C 0.05 0.97 3.83 36.01 0.14 1.11 16 16 O -0.28 -5.61 8.44 -39.33 -0.33 -5.94 16 17 C 0.14 2.38 6.66 -39.22 -0.26 2.12 16 18 C -0.21 -3.07 8.69 -39.43 -0.34 -3.41 16 19 C -0.05 -0.66 5.88 -104.65 -0.62 -1.27 16 20 C -0.11 -1.07 10.01 36.01 0.36 -0.71 16 21 C -0.16 -1.92 9.70 -39.56 -0.38 -2.30 16 22 C -0.08 -0.93 8.71 -39.60 -0.34 -1.28 16 23 C -0.11 -1.66 4.79 -104.47 -0.50 -2.16 16 24 C -0.06 -0.80 3.06 -91.77 -0.28 -1.08 16 25 C -0.14 -1.69 9.01 37.15 0.33 -1.35 16 26 C -0.14 -1.65 9.01 37.16 0.33 -1.31 16 27 H 0.20 3.26 7.80 -54.08 -0.42 2.84 16 28 H 0.11 2.44 6.60 -51.93 -0.34 2.10 16 29 H 0.06 1.05 6.70 -51.93 -0.35 0.70 16 30 H 0.27 6.62 8.31 -40.82 -0.34 6.28 16 31 H 0.07 1.24 6.95 -51.93 -0.36 0.88 16 32 H 0.08 1.47 7.00 -51.93 -0.36 1.11 16 33 H 0.13 1.75 6.30 -52.48 -0.33 1.42 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.07 0.60 8.08 -51.93 -0.42 0.18 16 36 H 0.06 0.52 8.09 -51.93 -0.42 0.10 16 37 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 38 H 0.12 1.23 7.10 -52.49 -0.37 0.86 16 39 H 0.09 1.61 6.99 -51.93 -0.36 1.25 16 40 H 0.05 0.53 7.39 -51.93 -0.38 0.15 16 41 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 43 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 44 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.05 0.52 7.39 -51.93 -0.38 0.14 16 LS Contribution 374.61 15.07 5.65 5.65 Total: -1.00 -31.48 374.61 -8.03 -39.51 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: -6.57 Total: 5.66 kcal Atomic # 6 Polarization: -9.43 SS G_CDS: -1.73 Total: -11.16 kcal Atomic # 7 Polarization: -32.84 SS G_CDS: 0.23 Total: -32.61 kcal Atomic # 8 Polarization: -21.53 SS G_CDS: -0.56 Total: -22.09 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.03 Total: 15.06 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -31.48 -8.03 -39.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281510240.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.166 kcal (2) G-P(sol) polarization free energy of solvation -31.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.506 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds