Wall clock time and date at job start Tue Mar 31 2020 12:20:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46503 * 109.46965 * 185.00772 * 3 2 1 5 5 C 1.37103 * 119.99902 * 263.92932 * 4 3 2 6 6 H 1.08002 * 119.99350 * 199.75264 * 5 4 3 7 7 C 1.38944 * 120.00062 * 19.74933 * 5 4 3 8 8 N 1.31415 * 120.00023 * 21.75388 * 7 5 4 9 9 Si 1.86799 * 119.99920 * 201.74408 * 7 5 4 10 10 H 1.48502 * 109.46791 * 90.00803 * 9 7 5 11 11 H 1.48507 * 109.47152 * 210.00397 * 9 7 5 12 12 H 1.48501 * 109.47218 * 330.00544 * 9 7 5 13 13 C 1.34776 * 119.99899 * 83.92938 * 4 3 2 14 14 O 1.21285 * 119.99897 * 179.97438 * 13 4 3 15 15 C 1.50706 * 119.99813 * 359.97438 * 13 4 3 16 16 O 1.42895 * 109.46900 * 179.97438 * 15 13 4 17 17 C 1.35899 * 116.99917 * 179.97438 * 16 15 13 18 18 C 1.38749 * 120.05720 * 359.73248 * 17 16 15 19 19 C 1.38124 * 119.94576 * 180.29603 * 18 17 16 20 20 C 1.50703 * 119.97007 * 179.97438 * 19 18 17 21 21 C 1.38283 * 120.05518 * 359.95149 * 19 18 17 22 22 C 1.38243 * 120.11625 * 0.04469 * 21 19 18 23 23 C 1.38175 * 120.04938 * 359.97438 * 22 21 19 24 24 C 1.50705 * 120.02428 * 179.97438 * 23 22 21 25 25 C 1.52991 * 109.47192 * 300.02105 * 24 23 22 26 26 C 1.53006 * 109.46989 * 60.02005 * 24 23 22 27 27 H 4.40640 * 5.51461 * 180.02562 * 4 1 2 28 28 H 1.09006 * 109.47028 * 65.00952 * 3 2 1 29 29 H 1.09001 * 109.47590 * 305.00939 * 3 2 1 30 30 H 0.97001 * 120.00022 * 179.97438 * 8 7 5 31 31 H 1.08999 * 109.46932 * 60.00235 * 15 13 4 32 32 H 1.08997 * 109.47210 * 299.99846 * 15 13 4 33 33 H 1.08003 * 120.02655 * 0.24892 * 18 17 16 34 34 H 1.08997 * 109.46964 * 269.99460 * 20 19 18 35 35 H 1.08998 * 109.47372 * 29.99916 * 20 19 18 36 36 H 1.09003 * 109.46926 * 150.00239 * 20 19 18 37 37 H 1.07998 * 119.94288 * 180.02562 * 21 19 18 38 38 H 1.07991 * 119.98027 * 179.97438 * 22 21 19 39 39 H 1.09000 * 109.47020 * 180.02562 * 24 23 22 40 40 H 1.09000 * 109.47278 * 59.99986 * 25 24 23 41 41 H 1.09001 * 109.47539 * 180.02562 * 25 24 23 42 42 H 1.09000 * 109.47534 * 300.00218 * 25 24 23 43 43 H 1.09002 * 109.47069 * 59.99884 * 26 24 23 44 44 H 1.08994 * 109.46660 * 179.97438 * 26 24 23 45 45 H 1.09000 * 109.47181 * 299.99830 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.3769 0.1206 5 6 3.4803 2.0822 -1.0029 6 1 4.1231 2.9462 -0.9210 7 6 3.0046 1.6854 -2.2466 8 7 1.9239 0.9424 -2.3303 9 14 3.9010 2.2084 -3.7997 10 1 4.9274 1.1922 -4.1447 11 1 2.9288 2.3286 -4.9158 12 1 4.5595 3.5201 -3.5734 13 6 3.2417 1.9495 1.3358 14 8 3.6459 3.0886 1.4357 15 6 2.8602 1.1743 2.5706 16 8 3.0617 1.9901 3.7264 17 6 2.7627 1.4375 4.9314 18 6 2.2799 0.1385 4.9996 19 6 1.9709 -0.4187 6.2251 20 6 1.4459 -1.8294 6.2998 21 6 2.1434 0.3165 7.3835 22 6 2.6244 1.6109 7.3184 23 6 2.9346 2.1730 6.0948 24 6 3.4583 3.5844 6.0244 25 6 2.4246 4.5423 6.6199 26 6 4.7629 3.6844 6.8176 27 1 -1.0502 -0.0004 0.0002 28 1 3.0096 -0.4334 -0.9315 29 1 3.0097 -0.5887 0.8417 30 1 1.5916 0.6657 -3.1985 31 1 3.4800 0.2807 2.6446 32 1 1.8112 0.8847 2.5082 33 1 2.1450 -0.4361 4.0952 34 1 0.3579 -1.8159 6.2363 35 1 1.8510 -2.4122 5.4726 36 1 1.7491 -2.2803 7.2448 37 1 1.9017 -0.1212 8.3408 38 1 2.7579 2.1833 8.2244 39 1 3.6441 3.8515 4.9841 40 1 2.2387 4.2752 7.6602 41 1 2.8032 5.5631 6.5685 42 1 1.4952 4.4710 6.0549 43 1 5.4993 3.0019 6.3934 44 1 5.1418 4.7051 6.7663 45 1 4.5769 3.4174 7.8579 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281510240.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:02 Heat of formation + Delta-G solvation = -8.852606 kcal Electronic energy + Delta-G solvation = -26232.253778 eV Core-core repulsion = 22602.261658 eV Total energy + Delta-G solvation = -3629.992119 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.54951 -40.45715 -38.56291 -37.08095 -36.66188 -34.12869 -33.10884 -32.37748 -31.17287 -29.81651 -28.21388 -27.98128 -27.47009 -26.22776 -23.74977 -22.85053 -21.33058 -20.77247 -19.77487 -18.76805 -18.47870 -17.79051 -17.33682 -17.20447 -16.53941 -16.36364 -15.96622 -15.65034 -15.02920 -14.99328 -14.68892 -14.66030 -14.60511 -14.17709 -14.11098 -14.05721 -13.64748 -13.56458 -13.11841 -12.96694 -12.85087 -12.81441 -12.72550 -12.51773 -12.38882 -12.18472 -12.09160 -11.76404 -11.51016 -11.47078 -11.23118 -11.13197 -10.73232 -10.41245 -9.91065 -9.62817 -8.99635 -8.37334 -6.00879 0.38731 0.51900 1.33467 1.41337 1.51439 1.70773 1.88066 2.22032 2.28368 2.37094 2.79522 2.97675 3.19084 3.68986 3.74968 3.79990 3.89051 3.95931 4.06695 4.12773 4.19469 4.27677 4.33493 4.48194 4.55581 4.57509 4.71578 4.80605 4.82252 4.86597 4.87467 4.90556 4.96857 5.03341 5.16696 5.27651 5.35412 5.36246 5.39948 5.43059 5.49595 5.64764 5.69043 5.88661 6.00366 6.33202 6.49286 7.06008 7.09273 7.28658 7.85018 8.60981 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.015999 B = 0.003671 C = 0.003148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.716340 B = 7626.523330 C = 8891.395717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.161 4.161 3 C 0.230 3.770 4 N -0.441 5.441 5 C -0.356 4.356 6 H 0.074 0.926 7 C 0.009 3.991 8 N -0.866 5.866 9 Si 0.986 3.014 10 H -0.261 1.261 11 H -0.276 1.276 12 H -0.279 1.279 13 C 0.437 3.563 14 O -0.615 6.615 15 C 0.070 3.930 16 O -0.315 6.315 17 C 0.103 3.897 18 C -0.220 4.220 19 C -0.057 4.057 20 C -0.112 4.112 21 C -0.156 4.156 22 C -0.073 4.073 23 C -0.127 4.127 24 C -0.059 4.059 25 C -0.134 4.134 26 C -0.133 4.133 27 H 0.233 0.767 28 H 0.097 0.903 29 H 0.100 0.900 30 H 0.275 0.725 31 H 0.102 0.898 32 H 0.088 0.912 33 H 0.130 0.870 34 H 0.079 0.921 35 H 0.068 0.932 36 H 0.086 0.914 37 H 0.153 0.847 38 H 0.153 0.847 39 H 0.046 0.954 40 H 0.078 0.922 41 H 0.063 0.937 42 H 0.037 0.963 43 H 0.040 0.960 44 H 0.063 0.937 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.768 -7.348 18.043 19.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C -0.162 4.162 3 C 0.108 3.892 4 N -0.160 5.160 5 C -0.483 4.483 6 H 0.092 0.908 7 C -0.196 4.196 8 N -0.502 5.502 9 Si 0.810 3.190 10 H -0.186 1.186 11 H -0.201 1.201 12 H -0.204 1.204 13 C 0.226 3.774 14 O -0.501 6.501 15 C -0.009 4.009 16 O -0.228 6.228 17 C 0.058 3.942 18 C -0.239 4.239 19 C -0.057 4.057 20 C -0.169 4.169 21 C -0.174 4.174 22 C -0.091 4.091 23 C -0.128 4.128 24 C -0.078 4.078 25 C -0.191 4.191 26 C -0.190 4.190 27 H 0.250 0.750 28 H 0.115 0.885 29 H 0.118 0.882 30 H 0.085 0.915 31 H 0.120 0.880 32 H 0.106 0.894 33 H 0.148 0.852 34 H 0.098 0.902 35 H 0.087 0.913 36 H 0.105 0.895 37 H 0.171 0.829 38 H 0.171 0.829 39 H 0.064 0.936 40 H 0.097 0.903 41 H 0.082 0.918 42 H 0.056 0.944 43 H 0.059 0.941 44 H 0.082 0.918 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -1.590 -6.705 17.867 19.150 hybrid contribution 0.006 0.364 -1.661 1.700 sum -1.584 -6.340 16.206 17.474 Atomic orbital electron populations 1.25164 0.96351 0.99903 1.04019 1.23355 0.94913 1.00300 0.97673 1.18387 0.84816 0.82974 1.03009 1.43791 1.55744 1.12080 1.04373 1.19558 1.29944 1.14263 0.84572 0.90802 1.25997 0.95143 0.97074 1.01354 1.70168 1.17781 1.35719 1.26525 0.85052 0.78277 0.78744 0.76946 1.18590 1.20124 1.20432 1.20401 0.84541 0.87198 0.85246 1.90511 1.52136 1.20684 1.86777 1.22315 1.02289 0.93371 0.82877 1.86128 1.82163 1.41819 1.12682 1.19356 0.96854 0.93039 0.84989 1.21310 1.07808 0.94741 1.00056 1.20054 0.96247 0.97576 0.91857 1.20857 1.01556 0.90580 1.03894 1.21269 1.02842 0.94519 0.98775 1.21060 0.96494 0.95424 0.96096 1.19453 1.05481 0.96863 0.91020 1.19961 0.96618 0.91260 0.99925 1.21785 0.97451 0.98624 1.01249 1.21779 0.95152 1.01786 1.00282 0.75024 0.88478 0.88191 0.91529 0.88008 0.89386 0.85223 0.90200 0.91315 0.89478 0.82921 0.82895 0.93587 0.90299 0.91806 0.94392 0.94089 0.91835 0.90345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -9.13 19.25 74.32 1.43 -7.69 16 2 C -0.16 -6.88 10.75 31.12 0.33 -6.55 16 3 C 0.23 9.86 4.91 84.57 0.42 10.27 16 4 N -0.44 -22.79 2.60 -645.40 -1.68 -24.46 16 5 C -0.36 -20.21 9.28 84.04 0.78 -19.43 16 6 H 0.07 4.56 7.42 -2.91 -0.02 4.53 16 7 C 0.01 0.46 4.83 84.92 0.41 0.87 16 8 N -0.87 -44.42 9.59 21.66 0.21 -44.21 16 9 Si 0.99 41.69 29.60 68.60 2.03 43.72 16 10 H -0.26 -10.37 7.11 99.48 0.71 -9.67 16 11 H -0.28 -11.24 7.11 99.48 0.71 -10.54 16 12 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 13 C 0.44 22.76 7.64 87.66 0.67 23.43 16 14 O -0.61 -37.81 16.17 15.99 0.26 -37.55 16 15 C 0.07 2.81 3.83 71.24 0.27 3.08 16 16 O -0.31 -13.30 8.44 -73.37 -0.62 -13.92 16 17 C 0.10 3.51 6.66 22.51 0.15 3.66 16 18 C -0.22 -6.27 8.69 22.36 0.19 -6.07 16 19 C -0.06 -1.27 5.88 -19.88 -0.12 -1.39 16 20 C -0.11 -1.73 10.01 71.24 0.71 -1.01 16 21 C -0.16 -3.07 9.70 22.28 0.22 -2.85 16 22 C -0.07 -1.59 8.71 22.26 0.19 -1.40 16 23 C -0.13 -3.74 4.79 -19.76 -0.09 -3.84 16 24 C -0.06 -1.71 3.06 -11.54 -0.04 -1.75 16 25 C -0.13 -3.19 9.01 71.98 0.65 -2.55 16 26 C -0.13 -3.09 9.01 71.98 0.65 -2.44 16 27 H 0.23 6.96 7.80 -4.41 -0.03 6.93 16 28 H 0.10 4.36 6.60 -2.38 -0.02 4.34 16 29 H 0.10 3.38 6.70 -2.39 -0.02 3.36 16 30 H 0.27 13.27 8.31 -92.71 -0.77 12.50 16 31 H 0.10 3.42 6.95 -2.39 -0.02 3.40 16 32 H 0.09 3.33 7.00 -2.39 -0.02 3.31 16 33 H 0.13 3.47 6.30 -2.91 -0.02 3.45 16 34 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.07 1.04 8.08 -2.39 -0.02 1.02 16 36 H 0.09 0.98 8.09 -2.39 -0.02 0.96 16 37 H 0.15 1.96 8.06 -2.91 -0.02 1.94 16 38 H 0.15 2.38 7.10 -2.92 -0.02 2.36 16 39 H 0.05 1.75 6.99 -2.39 -0.02 1.73 16 40 H 0.08 1.43 7.39 -2.39 -0.02 1.41 16 41 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 42 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 43 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 44 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 45 H 0.08 1.38 7.39 -2.39 -0.02 1.37 16 Total: -1.00 -73.36 374.61 8.01 -65.35 By element: Atomic # 1 Polarization: 25.74 SS G_CDS: 0.98 Total: 26.72 kcal Atomic # 6 Polarization: -22.48 SS G_CDS: 6.83 Total: -15.65 kcal Atomic # 7 Polarization: -67.20 SS G_CDS: -1.47 Total: -68.67 kcal Atomic # 8 Polarization: -51.11 SS G_CDS: -0.36 Total: -51.47 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 2.03 Total: 43.72 kcal Total: -73.36 8.01 -65.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281510240.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.501 kcal (2) G-P(sol) polarization free energy of solvation -73.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds