Wall clock time and date at job start Tue Mar 31 2020 12:01:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47344 * 319.42005 * 3 2 1 5 5 C 1.37096 * 119.99868 * 264.14502 * 4 3 2 6 6 H 1.08001 * 119.99743 * 197.43575 * 5 4 3 7 7 C 1.38952 * 120.00412 * 17.42976 * 5 4 3 8 8 N 1.31419 * 119.99792 * 21.52718 * 7 5 4 9 9 Si 1.86801 * 120.00131 * 201.52891 * 7 5 4 10 10 H 1.48496 * 109.47106 * 90.00289 * 9 7 5 11 11 H 1.48498 * 109.46669 * 209.99849 * 9 7 5 12 12 H 1.48500 * 109.47191 * 329.99966 * 9 7 5 13 13 C 1.34771 * 119.99851 * 84.13784 * 4 3 2 14 14 O 1.21299 * 119.99703 * 180.02562 * 13 4 3 15 15 C 1.50699 * 120.00287 * 0.02562 * 13 4 3 16 16 C 1.53004 * 109.47213 * 179.97438 * 15 13 4 17 17 C 1.52995 * 109.46868 * 179.97438 * 16 15 13 18 18 O 1.42899 * 109.46881 * 179.97438 * 17 16 15 19 19 C 1.35897 * 117.00204 * 180.02562 * 18 17 16 20 20 C 1.38761 * 120.05523 * 359.97438 * 19 18 17 21 21 C 1.38115 * 119.94468 * 180.27883 * 20 19 18 22 22 C 1.38291 * 120.05714 * 359.49222 * 21 20 19 23 23 C 1.50696 * 119.94655 * 180.25477 * 22 21 20 24 24 C 1.38243 * 120.10978 * 0.50846 * 22 21 20 25 25 C 1.50704 * 119.97624 * 179.72499 * 24 22 21 26 26 C 1.38168 * 120.05804 * 359.74385 * 24 22 21 27 27 H 4.40639 * 5.51396 * 180.02562 * 4 1 2 28 28 H 1.09002 * 109.46916 * 199.42173 * 3 2 1 29 29 H 1.08997 * 109.47197 * 79.42255 * 3 2 1 30 30 H 0.96991 * 119.99690 * 180.02562 * 8 7 5 31 31 H 1.08997 * 109.46920 * 59.99650 * 15 13 4 32 32 H 1.08999 * 109.47156 * 299.99747 * 15 13 4 33 33 H 1.08998 * 109.46839 * 59.99511 * 16 15 13 34 34 H 1.08999 * 109.46910 * 299.99968 * 16 15 13 35 35 H 1.09004 * 109.47218 * 60.00525 * 17 16 15 36 36 H 1.08999 * 109.47339 * 299.99718 * 17 16 15 37 37 H 1.07999 * 120.02291 * 0.02562 * 20 19 18 38 38 H 1.08000 * 119.97646 * 179.72475 * 21 20 19 39 39 H 1.08997 * 109.47436 * 270.25220 * 23 22 21 40 40 H 1.09006 * 109.47106 * 30.25403 * 23 22 21 41 41 H 1.09005 * 109.47066 * 150.25319 * 23 22 21 42 42 H 1.08991 * 109.46973 * 270.02399 * 25 24 22 43 43 H 1.09002 * 109.46885 * 30.02081 * 25 24 22 44 44 H 1.09002 * 109.47383 * 150.01773 * 25 24 22 45 45 H 1.07994 * 120.03041 * 179.97438 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.0481 0.8985 5 6 3.4774 -0.7398 2.1896 6 1 4.0903 -1.4198 2.7628 7 6 3.0363 0.4475 2.7609 8 7 1.9846 1.0627 2.2684 9 14 3.9381 1.1693 4.2290 10 1 5.0059 2.0849 3.7527 11 1 2.9802 1.9243 5.0760 12 1 4.5452 0.0726 5.0252 13 6 3.2477 -2.3160 0.4558 14 8 3.6520 -3.1845 1.1998 15 6 2.8715 -2.6549 -0.9637 16 6 3.0921 -4.1493 -1.2069 17 6 2.7096 -4.4933 -2.6478 18 8 2.9163 -5.8889 -2.8751 19 6 2.6230 -6.3621 -4.1148 20 6 2.1456 -5.5009 -5.0925 21 6 1.8428 -5.9854 -6.3499 22 6 2.0250 -7.3255 -6.6382 23 6 1.6993 -7.8504 -8.0128 24 6 2.5005 -8.1856 -5.6660 25 6 2.6921 -9.6468 -5.9816 26 6 2.8000 -7.7070 -4.4050 27 1 -1.0498 -0.0004 0.0001 28 1 3.0089 0.9700 0.3417 29 1 3.0094 -0.1878 -1.0102 30 1 1.6769 1.8917 2.6670 31 1 3.4918 -2.0797 -1.6510 32 1 1.8224 -2.4104 -1.1297 33 1 2.4722 -4.7247 -0.5194 34 1 4.1414 -4.3933 -1.0410 35 1 3.3294 -3.9179 -3.3355 36 1 1.6603 -4.2493 -2.8133 37 1 2.0070 -4.4534 -4.8690 38 1 1.4669 -5.3163 -7.1099 39 1 0.6573 -8.1688 -8.0427 40 1 1.8600 -7.0634 -8.7497 41 1 2.3450 -8.6986 -8.2403 42 1 1.7747 -10.1904 -5.7563 43 1 2.9323 -9.7616 -7.0387 44 1 3.5080 -10.0449 -5.3784 45 1 3.1711 -8.3794 -3.6457 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281514627.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:24 Heat of formation + Delta-G solvation = -13.853555 kcal Electronic energy + Delta-G solvation = -24844.769877 eV Core-core repulsion = 21214.560900 eV Total energy + Delta-G solvation = -3630.208977 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.21550 -40.55677 -39.00803 -37.16507 -34.95478 -33.93389 -33.49425 -33.01923 -32.68340 -29.27788 -28.32563 -27.77531 -26.80001 -26.10202 -23.59248 -22.75517 -21.35530 -20.63739 -19.68361 -18.68180 -18.39279 -17.98381 -17.35786 -17.10081 -16.48047 -16.22680 -16.17071 -15.91911 -15.23890 -15.14356 -14.79596 -14.65164 -14.31090 -14.09744 -13.96185 -13.91201 -13.55362 -13.54633 -13.16803 -13.11208 -12.87244 -12.75978 -12.71884 -12.45212 -12.33467 -12.16794 -12.04017 -12.02396 -11.61213 -11.44743 -11.18458 -11.07694 -10.64058 -10.33359 -9.83290 -9.72748 -8.94878 -8.32721 -5.92835 0.37885 0.47968 1.35999 1.42063 1.52816 1.88723 2.09311 2.22625 2.33449 2.39531 2.77299 3.04260 3.23392 3.79005 3.89417 3.90657 3.91708 3.95394 4.07912 4.11008 4.22885 4.35169 4.37872 4.40431 4.43282 4.53192 4.58715 4.75827 4.79925 4.83030 4.86328 4.97283 4.98333 5.04896 5.08238 5.19774 5.24069 5.28931 5.43851 5.44078 5.47227 5.47397 5.75225 5.94202 6.06298 6.44816 6.49920 7.14518 7.16041 7.42903 7.99539 8.65725 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.029748 B = 0.002182 C = 0.002070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.009975 B =12828.824125 C =13520.932469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.153 4.153 3 C 0.232 3.768 4 N -0.454 5.454 5 C -0.352 4.352 6 H 0.072 0.928 7 C 0.002 3.998 8 N -0.871 5.871 9 Si 0.983 3.017 10 H -0.263 1.263 11 H -0.278 1.278 12 H -0.280 1.280 13 C 0.437 3.563 14 O -0.632 6.632 15 C -0.113 4.113 16 C -0.090 4.090 17 C 0.069 3.931 18 O -0.337 6.337 19 C 0.106 3.894 20 C -0.220 4.220 21 C -0.082 4.082 22 C -0.137 4.137 23 C -0.109 4.109 24 C -0.056 4.056 25 C -0.116 4.116 26 C -0.173 4.173 27 H 0.231 0.769 28 H 0.092 0.908 29 H 0.104 0.896 30 H 0.272 0.728 31 H 0.114 0.886 32 H 0.096 0.904 33 H 0.052 0.948 34 H 0.062 0.938 35 H 0.083 0.917 36 H 0.076 0.924 37 H 0.140 0.860 38 H 0.147 0.853 39 H 0.075 0.925 40 H 0.073 0.927 41 H 0.079 0.921 42 H 0.081 0.919 43 H 0.089 0.911 44 H 0.069 0.931 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.373 -10.607 -22.228 24.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.265 4.265 2 C -0.155 4.155 3 C 0.110 3.890 4 N -0.172 5.172 5 C -0.480 4.480 6 H 0.090 0.910 7 C -0.201 4.201 8 N -0.508 5.508 9 Si 0.807 3.193 10 H -0.188 1.188 11 H -0.204 1.204 12 H -0.205 1.205 13 C 0.228 3.772 14 O -0.520 6.520 15 C -0.153 4.153 16 C -0.128 4.128 17 C -0.005 4.005 18 O -0.252 6.252 19 C 0.061 3.939 20 C -0.239 4.239 21 C -0.100 4.100 22 C -0.137 4.137 23 C -0.165 4.165 24 C -0.057 4.057 25 C -0.172 4.172 26 C -0.192 4.192 27 H 0.248 0.752 28 H 0.110 0.890 29 H 0.122 0.878 30 H 0.082 0.918 31 H 0.133 0.867 32 H 0.114 0.886 33 H 0.071 0.929 34 H 0.081 0.919 35 H 0.101 0.899 36 H 0.094 0.906 37 H 0.158 0.842 38 H 0.164 0.836 39 H 0.093 0.907 40 H 0.092 0.908 41 H 0.098 0.902 42 H 0.100 0.900 43 H 0.107 0.893 44 H 0.088 0.912 45 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -2.189 -10.918 -21.647 24.343 hybrid contribution 0.031 0.811 1.553 1.752 sum -2.157 -10.107 -20.094 22.596 Atomic orbital electron populations 1.25130 0.96358 1.01489 1.03493 1.23461 0.95000 0.99381 0.97639 1.18365 0.84553 0.93129 0.92973 1.43939 1.55961 1.06285 1.10971 1.19538 1.31614 1.05893 0.90935 0.90994 1.25953 0.95451 0.97348 1.01362 1.70176 1.19709 1.18093 1.42811 0.85095 0.78315 0.78078 0.77783 1.18830 1.20363 1.20522 1.21026 0.83048 0.81809 0.91309 1.90494 1.53009 1.48002 1.60468 1.21352 1.03971 0.96752 0.93192 1.21035 1.02413 0.94787 0.94570 1.22823 1.01938 0.79032 0.96729 1.86032 1.82390 1.27355 1.29376 1.19311 0.96341 0.93974 0.84236 1.21482 1.07026 1.00571 0.94797 1.21146 0.97417 0.95545 0.95894 1.20063 1.02512 0.93518 0.97581 1.20829 1.02387 1.02026 0.91285 1.19879 0.96548 0.97536 0.91690 1.20935 1.02938 0.89797 1.03557 1.20506 1.07461 0.92908 0.98305 0.75193 0.88997 0.87826 0.91818 0.86749 0.88561 0.92905 0.91942 0.89874 0.90592 0.84248 0.83575 0.90651 0.90815 0.90224 0.90038 0.89258 0.91212 0.85613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -9.46 19.25 74.32 1.43 -8.03 16 2 C -0.15 -6.51 10.88 31.13 0.34 -6.17 16 3 C 0.23 9.84 4.91 84.58 0.42 10.25 16 4 N -0.45 -22.98 2.60 -645.41 -1.68 -24.66 16 5 C -0.35 -19.91 9.33 84.04 0.78 -19.13 16 6 H 0.07 4.43 7.38 -2.91 -0.02 4.41 16 7 C 0.00 0.12 4.87 84.93 0.41 0.54 16 8 N -0.87 -45.12 9.48 21.66 0.21 -44.92 16 9 Si 0.98 42.22 29.60 68.60 2.03 44.25 16 10 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 11 H -0.28 -11.57 7.11 99.48 0.71 -10.86 16 12 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 13 C 0.44 21.33 7.56 87.66 0.66 22.00 16 14 O -0.63 -36.46 15.63 -3.09 -0.05 -36.51 16 15 C -0.11 -3.87 4.30 29.85 0.13 -3.74 16 16 C -0.09 -2.99 4.87 30.59 0.15 -2.84 16 17 C 0.07 1.80 4.74 71.98 0.34 2.14 16 18 O -0.34 -10.10 10.14 -92.39 -0.94 -11.04 16 19 C 0.11 2.81 6.69 22.51 0.15 2.96 16 20 C -0.22 -4.83 9.04 22.37 0.20 -4.62 16 21 C -0.08 -1.50 9.69 22.25 0.22 -1.28 16 22 C -0.14 -2.36 5.88 -19.85 -0.12 -2.48 16 23 C -0.11 -1.14 9.60 71.23 0.68 -0.46 16 24 C -0.06 -1.08 5.88 -19.88 -0.12 -1.20 16 25 C -0.12 -1.46 9.60 71.24 0.68 -0.77 16 26 C -0.17 -4.17 9.64 22.37 0.22 -3.96 16 27 H 0.23 6.87 7.80 -4.43 -0.03 6.84 16 28 H 0.09 4.18 6.44 -2.39 -0.02 4.17 16 29 H 0.10 3.40 6.69 -2.39 -0.02 3.39 16 30 H 0.27 13.34 8.31 -92.71 -0.77 12.57 16 31 H 0.11 3.12 7.42 -2.39 -0.02 3.10 16 32 H 0.10 3.08 7.51 -2.39 -0.02 3.06 16 33 H 0.05 2.00 8.10 -2.39 -0.02 1.98 16 34 H 0.06 2.26 8.10 -2.39 -0.02 2.24 16 35 H 0.08 1.78 7.66 -2.39 -0.02 1.76 16 36 H 0.08 1.74 7.66 -2.39 -0.02 1.72 16 37 H 0.14 2.61 6.30 -2.91 -0.02 2.59 16 38 H 0.15 1.88 8.06 -2.91 -0.02 1.85 16 39 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 40 H 0.07 0.63 8.09 -2.38 -0.02 0.61 16 41 H 0.08 0.65 5.94 -2.38 -0.01 0.64 16 42 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 43 H 0.09 0.80 5.94 -2.39 -0.01 0.78 16 44 H 0.07 0.84 8.08 -2.39 -0.02 0.82 16 45 H 0.13 2.94 8.06 -2.91 -0.02 2.92 16 Total: -1.00 -72.38 375.32 7.14 -65.25 By element: Atomic # 1 Polarization: 23.45 SS G_CDS: 0.98 Total: 24.43 kcal Atomic # 6 Polarization: -23.38 SS G_CDS: 6.58 Total: -16.80 kcal Atomic # 7 Polarization: -68.10 SS G_CDS: -1.47 Total: -69.57 kcal Atomic # 8 Polarization: -46.57 SS G_CDS: -0.98 Total: -47.55 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 2.03 Total: 44.25 kcal Total: -72.38 7.14 -65.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281514627.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.393 kcal (2) G-P(sol) polarization free energy of solvation -72.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds