Wall clock time and date at job start Tue Mar 31 2020 11:03:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50700 * 120.00199 * 2 1 4 4 N 1.46508 * 109.47170 * 125.52114 * 3 2 1 5 5 C 1.46509 * 119.99695 * 85.29622 * 4 3 2 6 6 C 1.50696 * 109.47022 * 90.00121 * 5 4 3 7 7 H 1.08005 * 120.00114 * 359.97438 * 6 5 4 8 8 C 1.37874 * 119.99689 * 179.97438 * 6 5 4 9 9 N 1.31511 * 120.00442 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 119.99627 * 180.02562 * 8 6 5 11 11 H 1.48493 * 109.47414 * 59.99844 * 10 8 6 12 12 H 1.48499 * 109.47063 * 299.99547 * 10 8 6 13 13 H 1.48503 * 109.46950 * 179.97438 * 10 8 6 14 14 C 1.34767 * 120.00041 * 265.29744 * 4 3 2 15 15 O 1.21278 * 120.00183 * 5.10889 * 14 4 3 16 16 C 1.50701 * 120.00053 * 185.10926 * 14 4 3 17 17 H 1.09000 * 110.66520 * 313.51356 * 16 14 4 18 18 C 1.54708 * 110.74872 * 76.92821 * 16 14 4 19 19 C 1.51652 * 101.92356 * 93.05126 * 18 16 14 20 20 C 1.37745 * 132.16161 * 195.89333 * 19 18 16 21 21 C 1.38346 * 119.97362 * 179.03652 * 20 19 18 22 22 C 1.50699 * 120.11795 * 179.97438 * 21 20 19 23 23 C 1.38296 * 119.76551 * 359.97438 * 21 20 19 24 24 C 1.50703 * 119.81920 * 180.17047 * 23 21 20 25 25 C 1.37927 * 120.35495 * 0.19992 * 23 21 20 26 26 C 1.38878 * 107.04160 * 15.36339 * 19 18 16 27 27 O 1.36130 * 111.23712 * 1.09931 * 26 19 18 28 28 H 1.07998 * 120.00259 * 180.02562 * 1 2 3 29 29 H 1.08000 * 119.99921 * 0.02562 * 1 2 3 30 30 H 1.08000 * 119.99921 * 179.97438 * 2 1 3 31 31 H 1.08997 * 109.47340 * 5.52407 * 3 2 1 32 32 H 1.09001 * 109.46966 * 245.51892 * 3 2 1 33 33 H 1.09003 * 109.47180 * 330.00038 * 5 4 3 34 34 H 1.08998 * 109.46925 * 210.00018 * 5 4 3 35 35 H 0.97005 * 119.99785 * 0.02562 * 9 8 6 36 36 H 1.09001 * 110.94010 * 211.20360 * 18 16 14 37 37 H 1.08999 * 110.93767 * 334.89384 * 18 16 14 38 38 H 1.08000 * 120.01405 * 359.01123 * 20 19 18 39 39 H 1.09003 * 109.47025 * 89.99623 * 22 21 20 40 40 H 1.08995 * 109.47212 * 209.99377 * 22 21 20 41 41 H 1.08998 * 109.47127 * 329.99921 * 22 21 20 42 42 H 1.08998 * 109.46603 * 90.00604 * 24 23 21 43 43 H 1.08999 * 109.46413 * 210.00062 * 24 23 21 44 44 H 1.08998 * 109.47594 * 330.00120 * 24 23 21 45 45 H 1.07994 * 119.88080 * 180.02562 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 3.0027 1.3267 1.1242 5 6 4.3320 0.7279 0.9798 6 6 5.2999 1.7684 0.4785 7 1 4.9589 2.7750 0.2862 8 6 6.6207 1.4353 0.2652 9 7 7.0360 0.2098 0.4998 10 14 7.8206 2.7254 -0.3556 11 1 7.8858 3.8482 0.6140 12 1 7.3620 3.2348 -1.6729 13 1 9.1683 2.1186 -0.5009 14 6 2.6438 1.8974 2.2912 15 8 1.5135 2.3102 2.4421 16 6 3.6472 2.0228 3.4086 17 1 4.1824 1.0842 3.5521 18 6 4.6322 3.1835 3.1331 19 6 3.9640 4.3391 3.8527 20 6 4.1465 5.7025 3.7812 21 6 3.3682 6.5455 4.5542 22 6 3.5655 8.0377 4.4789 23 6 2.4084 6.0141 5.3962 24 6 1.5573 6.9315 6.2359 25 6 2.2265 4.6490 5.4720 26 6 3.0091 3.7931 4.7005 27 8 3.0040 2.4338 4.6270 28 1 -0.5400 -0.9353 0.0004 29 1 -0.5400 0.9353 -0.0004 30 1 1.8499 -0.9353 0.0004 31 1 1.3594 2.1312 0.0989 32 1 2.6139 1.4068 -0.9353 33 1 4.2838 -0.0964 0.2682 34 1 4.6690 0.3540 1.9466 35 1 6.4129 -0.4600 0.8225 36 1 5.6123 2.9726 3.5610 37 1 4.7101 3.3829 2.0643 38 1 4.8972 6.1132 3.1223 39 1 2.9197 8.4509 3.7041 40 1 3.3133 8.4864 5.4396 41 1 4.6062 8.2549 4.2384 42 1 0.6595 7.2032 5.6808 43 1 1.2747 6.4225 7.1573 44 1 2.1221 7.8321 6.4767 45 1 1.4745 4.2423 6.1318 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292437281.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:31 Heat of formation + Delta-G solvation = -27.354683 kcal Electronic energy + Delta-G solvation = -26894.996589 eV Core-core repulsion = 23264.202159 eV Total energy + Delta-G solvation = -3630.794430 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.15592 -39.04789 -37.69327 -35.58749 -33.90937 -32.96522 -32.34722 -31.80600 -30.54751 -27.41028 -26.91491 -26.63311 -25.29879 -23.18582 -22.80324 -21.81274 -20.38897 -19.70426 -18.90705 -17.33625 -17.02596 -16.59903 -16.24275 -15.44954 -15.00051 -14.66134 -14.54042 -14.28732 -13.94727 -13.84551 -13.75607 -13.41189 -13.06429 -12.84799 -12.78167 -12.57317 -12.37665 -12.21484 -12.05669 -11.98436 -11.85234 -11.52597 -11.28655 -11.17393 -10.95644 -10.90510 -10.78930 -10.60064 -10.44037 -10.24183 -9.41395 -9.35647 -9.01300 -8.61865 -8.47617 -7.85362 -7.62827 -6.62199 -4.39638 1.51630 1.61158 2.45753 3.07183 3.29460 3.31345 3.41696 3.49311 3.93361 3.95206 4.32529 4.75117 4.88276 5.03241 5.04943 5.08423 5.10488 5.21999 5.23638 5.32610 5.42161 5.45684 5.50830 5.65472 5.69862 5.76796 5.82670 5.83576 5.89715 6.00212 6.06054 6.15968 6.20838 6.34795 6.36974 6.49835 6.52957 6.66813 6.72936 6.78655 6.82936 6.90367 6.99421 7.23306 7.48206 7.70812 7.95228 8.23790 8.52712 8.75517 9.30831 10.73324 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.010473 B = 0.005237 C = 0.003909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2672.881606 B = 5345.111975 C = 7160.397825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.161 4.161 3 C 0.145 3.855 4 N -0.584 5.584 5 C 0.224 3.776 6 C -0.619 4.619 7 H 0.059 0.941 8 C 0.029 3.971 9 N -0.900 5.900 10 Si 1.063 2.937 11 H -0.284 1.284 12 H -0.286 1.286 13 H -0.280 1.280 14 C 0.504 3.496 15 O -0.550 6.550 16 C 0.073 3.927 17 H 0.136 0.864 18 C -0.093 4.093 19 C -0.166 4.166 20 C -0.067 4.067 21 C -0.123 4.123 22 C -0.107 4.107 23 C -0.062 4.062 24 C -0.112 4.112 25 C -0.135 4.135 26 C 0.116 3.884 27 O -0.285 6.285 28 H 0.093 0.907 29 H 0.096 0.904 30 H 0.107 0.893 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.030 0.970 34 H 0.026 0.974 35 H 0.269 0.731 36 H 0.098 0.902 37 H 0.123 0.877 38 H 0.123 0.877 39 H 0.065 0.935 40 H 0.066 0.934 41 H 0.062 0.938 42 H 0.070 0.930 43 H 0.064 0.936 44 H 0.070 0.930 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.551 8.844 5.949 12.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.180 4.180 3 C 0.022 3.978 4 N -0.315 5.315 5 C 0.104 3.896 6 C -0.657 4.657 7 H 0.077 0.923 8 C -0.177 4.177 9 N -0.534 5.534 10 Si 0.890 3.110 11 H -0.211 1.211 12 H -0.212 1.212 13 H -0.206 1.206 14 C 0.290 3.710 15 O -0.429 6.429 16 C 0.014 3.986 17 H 0.153 0.847 18 C -0.130 4.130 19 C -0.167 4.167 20 C -0.086 4.086 21 C -0.123 4.123 22 C -0.163 4.163 23 C -0.062 4.062 24 C -0.168 4.168 25 C -0.153 4.153 26 C 0.071 3.929 27 O -0.198 6.198 28 H 0.112 0.888 29 H 0.114 0.886 30 H 0.125 0.875 31 H 0.097 0.903 32 H 0.105 0.895 33 H 0.048 0.952 34 H 0.044 0.956 35 H 0.080 0.920 36 H 0.116 0.884 37 H 0.141 0.859 38 H 0.141 0.859 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.081 0.919 42 H 0.088 0.912 43 H 0.083 0.917 44 H 0.089 0.911 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -5.621 9.118 5.752 12.158 hybrid contribution -1.404 -0.644 0.119 1.549 sum -7.025 8.474 5.871 12.476 Atomic orbital electron populations 1.23755 0.95835 1.01464 1.01289 1.23363 0.96166 0.99259 0.99210 1.20431 0.92079 0.95092 0.90177 1.47970 1.16451 1.56212 1.10899 1.19586 0.78201 0.94573 0.97284 1.22249 0.95714 0.97686 1.50030 0.92289 1.25757 0.97380 0.99901 0.94680 1.70837 1.38851 1.02721 1.41024 0.83610 0.76177 0.74592 0.76619 1.21050 1.21247 1.20556 1.20652 0.88372 0.77986 0.83946 1.90633 1.20790 1.49984 1.81505 1.23243 0.91336 1.01294 0.82697 0.84693 1.21879 0.97678 0.88867 1.04572 1.20978 0.99071 0.95192 1.01476 1.20118 0.99097 0.90905 0.98439 1.19512 0.98137 0.95728 0.98938 1.20726 1.02015 0.91482 1.02102 1.19309 0.96736 0.92705 0.97425 1.20816 0.98872 0.98478 0.98673 1.19974 1.00551 0.91254 1.03565 1.19502 0.93995 0.83427 0.96020 1.86856 1.77254 1.17715 1.37954 0.88840 0.88611 0.87521 0.90313 0.89485 0.95180 0.95608 0.92024 0.88358 0.85934 0.85877 0.91609 0.91482 0.91857 0.91182 0.91701 0.91120 0.85902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.75 14.32 29.02 0.42 -2.33 16 2 C -0.16 -2.66 9.84 -36.02 -0.35 -3.02 16 3 C 0.14 2.69 5.86 -5.19 -0.03 2.66 16 4 N -0.58 -12.08 2.44 -176.43 -0.43 -12.51 16 5 C 0.22 4.93 4.23 -5.19 -0.02 4.91 16 6 C -0.62 -14.76 7.29 -34.44 -0.25 -15.01 16 7 H 0.06 1.44 6.76 -52.48 -0.35 1.09 16 8 C 0.03 0.72 5.46 -17.82 -0.10 0.63 16 9 N -0.90 -24.01 13.65 55.43 0.76 -23.26 16 10 Si 1.06 22.58 29.90 -169.99 -5.08 17.50 16 11 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 12 H -0.29 -5.92 7.11 56.52 0.40 -5.51 16 13 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 14 C 0.50 10.89 6.87 -10.99 -0.08 10.81 16 15 O -0.55 -13.15 15.93 -13.26 -0.21 -13.36 16 16 C 0.07 1.46 3.24 -26.98 -0.09 1.37 16 17 H 0.14 2.53 6.59 -51.93 -0.34 2.19 16 18 C -0.09 -1.78 5.92 -26.52 -0.16 -1.93 16 19 C -0.17 -3.07 6.26 -104.10 -0.65 -3.72 16 20 C -0.07 -1.09 9.70 -39.72 -0.39 -1.47 16 21 C -0.12 -1.74 5.89 -104.56 -0.62 -2.36 16 22 C -0.11 -1.12 9.61 36.01 0.35 -0.77 16 23 C -0.06 -0.88 5.87 -104.71 -0.61 -1.49 16 24 C -0.11 -1.15 9.60 36.01 0.35 -0.80 16 25 C -0.13 -2.23 9.71 -39.30 -0.38 -2.61 16 26 C 0.12 2.21 6.72 -38.95 -0.26 1.95 16 27 O -0.29 -5.80 10.48 -38.97 -0.41 -6.21 16 28 H 0.09 1.19 8.06 -52.49 -0.42 0.77 16 29 H 0.10 1.41 7.84 -52.49 -0.41 0.99 16 30 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 31 H 0.08 1.49 7.01 -51.93 -0.36 1.13 16 32 H 0.09 1.57 8.11 -51.93 -0.42 1.15 16 33 H 0.03 0.69 7.94 -51.93 -0.41 0.28 16 34 H 0.03 0.58 6.04 -51.93 -0.31 0.26 16 35 H 0.27 7.08 7.22 -40.82 -0.29 6.79 16 36 H 0.10 1.78 8.14 -51.93 -0.42 1.36 16 37 H 0.12 2.54 5.13 -51.93 -0.27 2.28 16 38 H 0.12 1.77 8.06 -52.49 -0.42 1.34 16 39 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.07 0.59 5.95 -51.93 -0.31 0.28 16 41 H 0.06 0.61 8.09 -51.93 -0.42 0.19 16 42 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.06 0.60 8.08 -51.93 -0.42 0.18 16 44 H 0.07 0.60 5.94 -51.93 -0.31 0.30 16 45 H 0.12 1.83 8.06 -52.49 -0.42 1.41 16 LS Contribution 367.46 15.07 5.54 5.54 Total: -1.00 -29.20 367.46 -9.11 -38.31 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -6.39 Total: 7.18 kcal Atomic # 6 Polarization: -10.31 SS G_CDS: -2.88 Total: -13.19 kcal Atomic # 7 Polarization: -36.09 SS G_CDS: 0.33 Total: -35.76 kcal Atomic # 8 Polarization: -18.95 SS G_CDS: -0.62 Total: -19.57 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.08 Total: 17.50 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -29.20 -9.11 -38.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292437281.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.958 kcal (2) G-P(sol) polarization free energy of solvation -29.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds