Wall clock time and date at job start Tue Mar 31 2020 11:03:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50700 * 120.00199 * 2 1 4 4 N 1.46508 * 109.47170 * 125.52114 * 3 2 1 5 5 C 1.46509 * 119.99695 * 85.29622 * 4 3 2 6 6 C 1.50696 * 109.47022 * 90.00121 * 5 4 3 7 7 H 1.08005 * 120.00114 * 359.97438 * 6 5 4 8 8 C 1.37874 * 119.99689 * 179.97438 * 6 5 4 9 9 N 1.31511 * 120.00442 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 119.99627 * 180.02562 * 8 6 5 11 11 H 1.48493 * 109.47414 * 59.99844 * 10 8 6 12 12 H 1.48499 * 109.47063 * 299.99547 * 10 8 6 13 13 H 1.48503 * 109.46950 * 179.97438 * 10 8 6 14 14 C 1.34767 * 120.00041 * 265.29744 * 4 3 2 15 15 O 1.21278 * 120.00183 * 5.10889 * 14 4 3 16 16 C 1.50701 * 120.00053 * 185.10926 * 14 4 3 17 17 H 1.09000 * 110.66520 * 313.51356 * 16 14 4 18 18 C 1.54708 * 110.74872 * 76.92821 * 16 14 4 19 19 C 1.51652 * 101.92356 * 93.05126 * 18 16 14 20 20 C 1.37745 * 132.16161 * 195.89333 * 19 18 16 21 21 C 1.38346 * 119.97362 * 179.03652 * 20 19 18 22 22 C 1.50699 * 120.11795 * 179.97438 * 21 20 19 23 23 C 1.38296 * 119.76551 * 359.97438 * 21 20 19 24 24 C 1.50703 * 119.81920 * 180.17047 * 23 21 20 25 25 C 1.37927 * 120.35495 * 0.19992 * 23 21 20 26 26 C 1.38878 * 107.04160 * 15.36339 * 19 18 16 27 27 O 1.36130 * 111.23712 * 1.09931 * 26 19 18 28 28 H 1.07998 * 120.00259 * 180.02562 * 1 2 3 29 29 H 1.08000 * 119.99921 * 0.02562 * 1 2 3 30 30 H 1.08000 * 119.99921 * 179.97438 * 2 1 3 31 31 H 1.08997 * 109.47340 * 5.52407 * 3 2 1 32 32 H 1.09001 * 109.46966 * 245.51892 * 3 2 1 33 33 H 1.09003 * 109.47180 * 330.00038 * 5 4 3 34 34 H 1.08998 * 109.46925 * 210.00018 * 5 4 3 35 35 H 0.97005 * 119.99785 * 0.02562 * 9 8 6 36 36 H 1.09001 * 110.94010 * 211.20360 * 18 16 14 37 37 H 1.08999 * 110.93767 * 334.89384 * 18 16 14 38 38 H 1.08000 * 120.01405 * 359.01123 * 20 19 18 39 39 H 1.09003 * 109.47025 * 89.99623 * 22 21 20 40 40 H 1.08995 * 109.47212 * 209.99377 * 22 21 20 41 41 H 1.08998 * 109.47127 * 329.99921 * 22 21 20 42 42 H 1.08998 * 109.46603 * 90.00604 * 24 23 21 43 43 H 1.08999 * 109.46413 * 210.00062 * 24 23 21 44 44 H 1.08998 * 109.47594 * 330.00120 * 24 23 21 45 45 H 1.07994 * 119.88080 * 180.02562 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 3.0027 1.3267 1.1242 5 6 4.3320 0.7279 0.9798 6 6 5.2999 1.7684 0.4785 7 1 4.9589 2.7750 0.2862 8 6 6.6207 1.4353 0.2652 9 7 7.0360 0.2098 0.4998 10 14 7.8206 2.7254 -0.3556 11 1 7.8858 3.8482 0.6140 12 1 7.3620 3.2348 -1.6729 13 1 9.1683 2.1186 -0.5009 14 6 2.6438 1.8974 2.2912 15 8 1.5135 2.3102 2.4421 16 6 3.6472 2.0228 3.4086 17 1 4.1824 1.0842 3.5521 18 6 4.6322 3.1835 3.1331 19 6 3.9640 4.3391 3.8527 20 6 4.1465 5.7025 3.7812 21 6 3.3682 6.5455 4.5542 22 6 3.5655 8.0377 4.4789 23 6 2.4084 6.0141 5.3962 24 6 1.5573 6.9315 6.2359 25 6 2.2265 4.6490 5.4720 26 6 3.0091 3.7931 4.7005 27 8 3.0040 2.4338 4.6270 28 1 -0.5400 -0.9353 0.0004 29 1 -0.5400 0.9353 -0.0004 30 1 1.8499 -0.9353 0.0004 31 1 1.3594 2.1312 0.0989 32 1 2.6139 1.4068 -0.9353 33 1 4.2838 -0.0964 0.2682 34 1 4.6690 0.3540 1.9466 35 1 6.4129 -0.4600 0.8225 36 1 5.6123 2.9726 3.5610 37 1 4.7101 3.3829 2.0643 38 1 4.8972 6.1132 3.1223 39 1 2.9197 8.4509 3.7041 40 1 3.3133 8.4864 5.4396 41 1 4.6062 8.2549 4.2384 42 1 0.6595 7.2032 5.6808 43 1 1.2747 6.4225 7.1573 44 1 2.1221 7.8321 6.4767 45 1 1.4745 4.2423 6.1318 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292437281.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:30 Heat of formation + Delta-G solvation = -40.647483 kcal Electronic energy + Delta-G solvation = -26895.573008 eV Core-core repulsion = 23264.202159 eV Total energy + Delta-G solvation = -3631.370849 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -42.61012 -40.58298 -39.01382 -37.30436 -35.51329 -34.34750 -33.96040 -32.94787 -31.84608 -29.00074 -28.41494 -27.75342 -26.66854 -25.06667 -24.16077 -23.08785 -21.73087 -21.02744 -20.50847 -19.04009 -18.68541 -18.02628 -17.80254 -16.90511 -16.42130 -16.10904 -15.89903 -15.61259 -15.58138 -15.13549 -15.02070 -14.67255 -14.59708 -14.37724 -14.01256 -13.97786 -13.69221 -13.55641 -13.43963 -13.26860 -13.16470 -12.86286 -12.73537 -12.53678 -12.37564 -12.30884 -12.14888 -12.03081 -11.93225 -11.69473 -11.21745 -10.90147 -10.56792 -10.38730 -9.72177 -9.60245 -8.93616 -8.61089 -6.39143 0.27032 0.34923 1.14575 1.39052 1.58746 1.61808 1.81178 1.94498 2.39857 2.56119 2.68200 3.15116 3.35356 3.44087 3.51168 3.86794 3.90868 3.95855 4.04707 4.10075 4.14718 4.28946 4.38673 4.45411 4.57210 4.63748 4.66156 4.70907 4.74600 4.77017 4.82430 4.92910 4.93937 4.97898 5.03619 5.15146 5.24617 5.35225 5.43157 5.48848 5.55931 5.63105 5.70761 5.74738 5.79749 6.08036 6.16747 6.40202 6.54761 7.03830 7.37312 8.74575 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.010473 B = 0.005237 C = 0.003909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2672.881606 B = 5345.111975 C = 7160.397825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.185 4.185 3 C 0.143 3.857 4 N -0.582 5.582 5 C 0.234 3.766 6 C -0.610 4.610 7 H 0.053 0.947 8 C -0.009 4.009 9 N -0.927 5.927 10 Si 1.100 2.900 11 H -0.268 1.268 12 H -0.275 1.275 13 H -0.287 1.287 14 C 0.501 3.499 15 O -0.577 6.577 16 C 0.073 3.927 17 H 0.139 0.861 18 C -0.085 4.085 19 C -0.188 4.188 20 C -0.079 4.079 21 C -0.118 4.118 22 C -0.106 4.106 23 C -0.060 4.060 24 C -0.110 4.110 25 C -0.147 4.147 26 C 0.079 3.921 27 O -0.301 6.301 28 H 0.121 0.879 29 H 0.097 0.903 30 H 0.109 0.891 31 H 0.072 0.928 32 H 0.087 0.913 33 H 0.023 0.977 34 H 0.024 0.976 35 H 0.261 0.739 36 H 0.101 0.899 37 H 0.103 0.897 38 H 0.137 0.863 39 H 0.076 0.924 40 H 0.090 0.910 41 H 0.072 0.928 42 H 0.081 0.919 43 H 0.075 0.925 44 H 0.094 0.906 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.267 11.264 6.471 14.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.204 4.204 3 C 0.021 3.979 4 N -0.313 5.313 5 C 0.113 3.887 6 C -0.649 4.649 7 H 0.071 0.929 8 C -0.210 4.210 9 N -0.563 5.563 10 Si 0.923 3.077 11 H -0.193 1.193 12 H -0.201 1.201 13 H -0.213 1.213 14 C 0.289 3.711 15 O -0.458 6.458 16 C 0.014 3.986 17 H 0.156 0.844 18 C -0.122 4.122 19 C -0.189 4.189 20 C -0.097 4.097 21 C -0.118 4.118 22 C -0.162 4.162 23 C -0.060 4.060 24 C -0.166 4.166 25 C -0.165 4.165 26 C 0.034 3.966 27 O -0.215 6.215 28 H 0.139 0.861 29 H 0.115 0.885 30 H 0.127 0.873 31 H 0.091 0.909 32 H 0.105 0.895 33 H 0.041 0.959 34 H 0.041 0.959 35 H 0.071 0.929 36 H 0.119 0.881 37 H 0.122 0.878 38 H 0.155 0.845 39 H 0.095 0.905 40 H 0.108 0.892 41 H 0.091 0.909 42 H 0.099 0.901 43 H 0.094 0.906 44 H 0.112 0.888 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -6.356 11.545 6.268 14.594 hybrid contribution -1.304 -1.322 -0.016 1.857 sum -7.660 10.224 6.252 14.223 Atomic orbital electron populations 1.23997 0.95178 1.02818 0.98062 1.23232 0.96824 0.98166 1.02144 1.20532 0.91771 0.96277 0.89345 1.48004 1.16274 1.55648 1.11356 1.19363 0.78617 0.93955 0.96738 1.22353 0.95947 0.97579 1.48971 0.92927 1.26831 0.99160 1.00558 0.94491 1.70933 1.38897 1.03463 1.43041 0.83121 0.74200 0.73307 0.77079 1.19285 1.20089 1.21260 1.20948 0.88304 0.77464 0.84376 1.90595 1.21876 1.51253 1.82047 1.23227 0.91141 1.01821 0.82439 0.84352 1.21705 0.97744 0.89349 1.03372 1.21051 0.99680 0.96010 1.02177 1.20454 0.99916 0.90219 0.99141 1.20030 0.96741 0.97747 0.97308 1.20829 1.03059 0.88434 1.03841 1.19840 0.96674 0.92299 0.97167 1.20923 0.98788 0.98478 0.98440 1.20357 1.00500 0.92240 1.03426 1.19880 0.95732 0.82972 0.98009 1.86804 1.77733 1.19043 1.37873 0.86124 0.88499 0.87282 0.90935 0.89519 0.95886 0.95866 0.92899 0.88086 0.87837 0.84522 0.90501 0.89153 0.90856 0.90062 0.90636 0.88758 0.84961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.59 14.32 67.79 0.97 -3.62 16 2 C -0.18 -6.07 9.84 25.65 0.25 -5.82 16 3 C 0.14 5.38 5.86 85.63 0.50 5.89 16 4 N -0.58 -24.72 2.44 -830.48 -2.03 -26.74 16 5 C 0.23 10.59 4.23 85.63 0.36 10.95 16 6 C -0.61 -29.56 7.29 25.60 0.19 -29.38 16 7 H 0.05 2.60 6.76 -2.91 -0.02 2.58 16 8 C -0.01 -0.48 5.46 84.65 0.46 -0.01 16 9 N -0.93 -50.20 13.65 21.45 0.29 -49.91 16 10 Si 1.10 45.22 29.90 68.60 2.05 47.27 16 11 H -0.27 -10.22 7.11 99.48 0.71 -9.51 16 12 H -0.28 -10.77 7.11 99.48 0.71 -10.06 16 13 H -0.29 -12.08 7.11 99.48 0.71 -11.37 16 14 C 0.50 22.34 6.87 87.66 0.60 22.94 16 15 O -0.58 -28.25 15.93 14.97 0.24 -28.01 16 16 C 0.07 3.02 3.24 30.43 0.10 3.12 16 17 H 0.14 5.46 6.59 -2.39 -0.02 5.44 16 18 C -0.08 -3.34 5.92 30.73 0.18 -3.16 16 19 C -0.19 -7.05 6.26 -19.52 -0.12 -7.17 16 20 C -0.08 -2.48 9.70 22.18 0.22 -2.26 16 21 C -0.12 -3.07 5.89 -19.83 -0.12 -3.19 16 22 C -0.11 -1.79 9.61 71.24 0.68 -1.10 16 23 C -0.06 -1.56 5.87 -19.92 -0.12 -1.68 16 24 C -0.11 -1.85 9.60 71.24 0.68 -1.16 16 25 C -0.15 -4.77 9.71 22.45 0.22 -4.55 16 26 C 0.08 3.06 6.72 22.68 0.15 3.21 16 27 O -0.30 -12.72 10.48 -77.03 -0.81 -13.53 16 28 H 0.12 2.75 8.06 -2.91 -0.02 2.73 16 29 H 0.10 2.72 7.84 -2.91 -0.02 2.69 16 30 H 0.11 3.52 8.06 -2.91 -0.02 3.49 16 31 H 0.07 2.80 7.01 -2.39 -0.02 2.78 16 32 H 0.09 3.20 8.11 -2.39 -0.02 3.18 16 33 H 0.02 1.08 7.94 -2.39 -0.02 1.06 16 34 H 0.02 1.08 6.04 -2.39 -0.01 1.06 16 35 H 0.26 14.10 7.22 -92.70 -0.67 13.43 16 36 H 0.10 3.79 8.14 -2.39 -0.02 3.77 16 37 H 0.10 4.43 5.13 -2.39 -0.01 4.42 16 38 H 0.14 3.76 8.06 -2.91 -0.02 3.73 16 39 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.09 1.13 5.95 -2.39 -0.01 1.12 16 41 H 0.07 1.13 8.09 -2.39 -0.02 1.11 16 42 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 43 H 0.07 1.13 8.08 -2.39 -0.02 1.12 16 44 H 0.09 1.15 5.94 -2.39 -0.01 1.14 16 45 H 0.13 3.88 8.06 -2.91 -0.02 3.86 16 Total: -1.00 -63.79 367.46 6.06 -57.73 By element: Atomic # 1 Polarization: 29.10 SS G_CDS: 1.09 Total: 30.19 kcal Atomic # 6 Polarization: -22.22 SS G_CDS: 5.22 Total: -17.00 kcal Atomic # 7 Polarization: -74.92 SS G_CDS: -1.73 Total: -76.65 kcal Atomic # 8 Polarization: -40.97 SS G_CDS: -0.57 Total: -41.54 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.05 Total: 47.27 kcal Total: -63.79 6.06 -57.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292437281.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.083 kcal (2) G-P(sol) polarization free energy of solvation -63.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds