Wall clock time and date at job start Tue Mar 31 2020 11:24:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46495 * 110.01645 * 2 1 4 4 C 1.34779 * 119.99997 * 59.29687 * 3 2 1 5 5 O 1.21728 * 119.99668 * 0.02562 * 4 3 2 6 6 C 1.46255 * 120.00268 * 179.97438 * 4 3 2 7 7 C 1.35021 * 120.00084 * 179.97438 * 6 4 3 8 8 C 1.46965 * 120.00062 * 180.02562 * 7 6 4 9 9 C 1.40025 * 120.09667 * 359.72757 * 8 7 6 10 10 C 1.37603 * 119.89432 * 179.69734 * 9 8 7 11 11 C 1.39178 * 120.09668 * 0.59925 * 10 9 8 12 12 O 1.35574 * 119.89490 * 179.69681 * 11 10 9 13 13 C 1.34781 * 116.99736 * 174.42418 * 12 11 10 14 14 H 1.08000 * 120.00231 * 5.06015 * 13 12 11 15 15 C 1.38723 * 119.99824 * 185.05537 * 13 12 11 16 16 N 1.31506 * 119.99798 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00215 * 180.02562 * 15 13 12 18 18 H 1.48492 * 109.46853 * 59.99769 * 17 15 13 19 19 H 1.48493 * 109.47356 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.46636 * 300.00202 * 17 15 13 21 21 C 1.39170 * 120.20461 * 359.67562 * 11 10 9 22 22 C 1.37592 * 120.10583 * 0.02668 * 21 11 10 23 23 C 1.53877 * 110.03018 * 121.39229 * 2 1 3 24 24 C 1.54374 * 106.54211 * 119.34931 * 23 2 1 25 25 C 1.54879 * 104.22085 * 23.57351 * 24 23 2 26 26 C 1.54263 * 110.03419 * 238.60825 * 2 1 3 27 27 H 1.09000 * 109.47226 * 60.70480 * 1 2 3 28 28 H 1.09007 * 109.46821 * 180.69832 * 1 2 3 29 29 H 1.08993 * 109.47156 * 300.69946 * 1 2 3 30 30 H 0.96999 * 120.00411 * 239.01988 * 3 2 1 31 31 H 1.07994 * 119.99761 * 0.02562 * 6 4 3 32 32 H 1.07999 * 119.99692 * 0.02562 * 7 6 4 33 33 H 1.08001 * 120.05220 * 0.02562 * 9 8 7 34 34 H 1.07994 * 119.94876 * 180.28142 * 10 9 8 35 35 H 0.97008 * 120.00302 * 179.97438 * 16 15 13 36 36 H 1.08000 * 119.94824 * 179.97438 * 21 11 10 37 37 H 1.07999 * 120.05736 * 180.02562 * 22 21 11 38 38 H 1.08998 * 110.02899 * 238.62098 * 23 2 1 39 39 H 1.08999 * 110.03052 * 0.04864 * 23 2 1 40 40 H 1.09007 * 110.46051 * 264.89019 * 24 23 2 41 41 H 1.09007 * 110.48751 * 142.27211 * 24 23 2 42 42 H 1.08996 * 110.76128 * 203.75891 * 25 24 23 43 43 H 1.09008 * 110.91774 * 80.45985 * 25 24 23 44 44 H 1.09002 * 110.48575 * 335.73880 * 26 2 1 45 45 H 1.08996 * 110.48734 * 98.24506 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0315 1.3765 0.0000 4 6 1.7022 2.2136 1.0036 5 8 0.9885 1.8258 1.9102 6 6 2.2032 3.5877 1.0040 7 6 1.8729 4.4265 2.0091 8 6 2.3759 5.8074 2.0092 9 6 3.2025 6.2536 0.9708 10 6 3.6660 7.5492 0.9717 11 6 3.3246 8.4119 2.0092 12 8 3.7886 9.6857 2.0092 13 6 3.3303 10.5038 2.9773 14 1 2.6899 10.1145 3.7549 15 6 3.6813 11.8459 2.9749 16 7 4.4607 12.3200 2.0278 17 14 3.0467 12.9797 4.3170 18 1 3.5114 12.4897 5.6395 19 1 3.5617 14.3537 4.0888 20 1 1.5620 12.9970 4.2892 21 6 2.5079 7.9710 3.0463 22 6 2.0347 6.6790 3.0506 23 6 2.0571 -0.7531 1.2341 24 6 2.8891 -1.9398 0.7026 25 6 3.3144 -1.4995 -0.7200 26 6 2.0585 -0.7549 -1.2371 27 1 -0.3634 0.5028 -0.8962 28 1 -0.3633 -1.0277 0.0125 29 1 -0.3633 0.5246 0.8836 30 1 2.6038 1.6842 -0.7202 31 1 2.8367 3.9316 0.1998 32 1 1.2390 4.0826 2.8130 33 1 3.4715 5.5835 0.1676 34 1 4.2999 7.8956 0.1689 35 1 4.7059 13.2586 2.0258 36 1 2.2459 8.6438 3.8495 37 1 1.4007 6.3378 3.8555 38 1 2.6859 -0.0943 1.8330 39 1 1.2228 -1.1192 1.8325 40 1 2.2793 -2.8422 0.6564 41 1 3.7657 -2.1025 1.3298 42 1 3.5337 -2.3663 -1.3434 43 1 4.1721 -0.8279 -0.6794 44 1 1.3146 -1.4659 -1.5968 45 1 2.3268 -0.0529 -2.0266 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299259794.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:55 Heat of formation + Delta-G solvation = -55.952028 kcal Electronic energy + Delta-G solvation = -24728.247721 eV Core-core repulsion = 21096.213218 eV Total energy + Delta-G solvation = -3632.034504 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.28800 -40.81019 -38.94251 -38.33881 -34.72501 -34.52847 -33.97002 -31.97391 -31.35596 -29.70991 -29.49940 -27.50998 -26.05565 -24.65559 -23.70926 -22.36053 -21.73734 -20.60599 -20.24087 -19.70703 -18.82453 -18.16571 -17.23694 -16.51347 -16.42089 -16.14230 -15.91999 -15.63787 -15.60546 -15.44932 -15.13480 -14.66072 -14.56572 -14.25395 -14.10252 -13.86550 -13.59500 -13.34417 -13.18456 -13.10616 -12.69688 -12.64383 -12.51279 -12.22941 -12.14464 -12.07106 -11.96397 -11.88676 -11.69233 -11.42137 -11.21908 -11.09403 -10.66609 -10.55539 -9.96835 -9.89632 -8.67495 -8.52156 -6.18399 -0.22546 0.58046 1.15883 1.35454 1.47286 1.51250 2.15338 2.34045 2.42263 2.86590 3.17770 3.42326 3.52974 3.71394 3.84695 3.94165 3.97095 4.08369 4.29794 4.34029 4.37007 4.46178 4.48565 4.52521 4.59902 4.67030 4.75246 4.84828 4.90954 4.92577 4.94690 5.03183 5.08723 5.12544 5.19459 5.23769 5.26466 5.33917 5.34745 5.40460 5.47617 5.58934 5.63550 5.76346 5.82277 5.97041 6.10382 6.71483 6.91957 7.39388 7.69082 8.69600 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.038096 B = 0.001962 C = 0.001916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.808123 B =14267.813194 C =14611.666520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.166 3.834 3 N -0.708 5.708 4 C 0.549 3.451 5 O -0.584 6.584 6 C -0.245 4.245 7 C 0.012 3.988 8 C -0.170 4.170 9 C -0.038 4.038 10 C -0.207 4.207 11 C 0.129 3.871 12 O -0.219 6.219 13 C -0.418 4.418 14 H 0.105 0.895 15 C -0.019 4.019 16 N -0.913 5.913 17 Si 1.018 2.982 18 H -0.257 1.257 19 H -0.271 1.271 20 H -0.257 1.257 21 C -0.249 4.249 22 C -0.042 4.042 23 C -0.122 4.122 24 C -0.123 4.123 25 C -0.122 4.122 26 C -0.118 4.118 27 H 0.058 0.942 28 H 0.075 0.925 29 H 0.048 0.952 30 H 0.412 0.588 31 H 0.149 0.851 32 H 0.123 0.877 33 H 0.160 0.840 34 H 0.123 0.877 35 H 0.275 0.725 36 H 0.125 0.875 37 H 0.143 0.857 38 H 0.044 0.956 39 H 0.057 0.943 40 H 0.076 0.924 41 H 0.064 0.936 42 H 0.084 0.916 43 H 0.067 0.933 44 H 0.092 0.908 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.372 -25.984 -6.257 27.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.080 3.920 3 N -0.360 5.360 4 C 0.340 3.660 5 O -0.466 6.466 6 C -0.266 4.266 7 C -0.008 4.008 8 C -0.170 4.170 9 C -0.056 4.056 10 C -0.226 4.226 11 C 0.077 3.923 12 O -0.124 6.124 13 C -0.493 4.493 14 H 0.122 0.878 15 C -0.218 4.218 16 N -0.550 5.550 17 Si 0.837 3.163 18 H -0.181 1.181 19 H -0.196 1.196 20 H -0.182 1.182 21 C -0.268 4.268 22 C -0.060 4.060 23 C -0.161 4.161 24 C -0.161 4.161 25 C -0.159 4.159 26 C -0.156 4.156 27 H 0.077 0.923 28 H 0.094 0.906 29 H 0.067 0.933 30 H 0.249 0.751 31 H 0.167 0.833 32 H 0.141 0.859 33 H 0.177 0.823 34 H 0.141 0.859 35 H 0.084 0.916 36 H 0.142 0.858 37 H 0.161 0.839 38 H 0.063 0.937 39 H 0.076 0.924 40 H 0.094 0.906 41 H 0.083 0.917 42 H 0.103 0.897 43 H 0.085 0.915 44 H 0.111 0.889 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -4.607 -25.956 -5.870 27.007 hybrid contribution 0.122 1.256 0.481 1.351 sum -4.485 -24.699 -5.390 25.675 Atomic orbital electron populations 1.22205 0.94659 1.02662 1.02069 1.21090 0.93738 0.80862 0.96318 1.46045 1.52259 1.11847 1.25856 1.18471 0.79627 0.86317 0.81581 1.90749 1.39646 1.78542 1.37705 1.22835 1.07745 0.93065 1.02938 1.22143 0.92348 0.90151 0.96151 1.18796 1.05586 0.94328 0.98338 1.21279 0.93505 0.93458 0.97352 1.20424 1.08188 0.94542 0.99429 1.20185 0.92026 0.85625 0.94481 1.83885 1.60545 1.17701 1.50311 1.21854 1.31966 0.90139 1.05377 0.87763 1.26616 0.96404 0.97829 1.00917 1.70142 1.34674 1.15907 1.34286 0.84648 0.78955 0.76185 0.76484 1.18115 1.19563 1.18167 1.21199 1.05876 0.98368 1.01372 1.21308 0.95989 0.91494 0.97169 1.22487 0.99366 0.97230 0.96976 1.22412 0.99358 0.97378 0.96964 1.22508 0.97228 1.00513 0.95662 1.22675 0.98277 0.99413 0.95234 0.92277 0.90567 0.93309 0.75081 0.83332 0.85894 0.82300 0.85904 0.91583 0.85759 0.83908 0.93683 0.92390 0.90568 0.91732 0.89723 0.91470 0.88911 0.89553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.82 8.07 71.98 0.58 -2.24 16 2 C 0.17 2.64 0.94 4.33 0.00 2.65 16 3 N -0.71 -12.18 5.07 -423.95 -2.15 -14.33 16 4 C 0.55 13.39 6.87 86.33 0.59 13.98 16 5 O -0.58 -18.41 13.42 -4.44 -0.06 -18.47 16 6 C -0.25 -5.65 9.41 23.61 0.22 -5.42 16 7 C 0.01 0.32 9.45 23.82 0.23 0.55 16 8 C -0.17 -5.34 5.87 -20.13 -0.12 -5.46 16 9 C -0.04 -1.20 9.40 22.55 0.21 -0.99 16 10 C -0.21 -8.28 9.97 22.35 0.22 -8.06 16 11 C 0.13 6.18 6.66 22.72 0.15 6.33 16 12 O -0.22 -12.75 9.74 -20.30 -0.20 -12.95 16 13 C -0.42 -23.60 9.48 67.94 0.64 -22.95 16 14 H 0.11 5.38 5.18 -2.91 -0.02 5.37 16 15 C -0.02 -1.04 5.49 84.86 0.47 -0.58 16 16 N -0.91 -54.48 13.67 21.62 0.30 -54.19 16 17 Si 1.02 41.63 29.55 68.60 2.03 43.65 16 18 H -0.26 -9.88 7.11 99.48 0.71 -9.17 16 19 H -0.27 -10.66 7.11 99.48 0.71 -9.96 16 20 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 21 C -0.25 -10.54 9.14 22.34 0.20 -10.33 16 22 C -0.04 -1.43 9.78 22.55 0.22 -1.21 16 23 C -0.12 -2.24 5.32 31.36 0.17 -2.07 16 24 C -0.12 -1.54 6.83 31.70 0.22 -1.32 16 25 C -0.12 -1.13 6.91 31.88 0.22 -0.91 16 26 C -0.12 -1.12 6.01 31.67 0.19 -0.93 16 27 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 29 H 0.05 1.21 6.14 -2.39 -0.01 1.19 16 30 H 0.41 4.70 8.22 -92.71 -0.76 3.94 16 31 H 0.15 2.61 6.06 -2.91 -0.02 2.59 16 32 H 0.12 3.41 7.52 -2.91 -0.02 3.39 16 33 H 0.16 3.62 6.16 -2.91 -0.02 3.60 16 34 H 0.12 4.76 8.06 -2.91 -0.02 4.74 16 35 H 0.28 15.03 8.31 -92.70 -0.77 14.26 16 36 H 0.12 5.31 5.62 -2.91 -0.02 5.29 16 37 H 0.14 4.03 8.06 -2.91 -0.02 4.00 16 38 H 0.04 1.05 7.29 -2.39 -0.02 1.03 16 39 H 0.06 1.18 7.67 -2.39 -0.02 1.17 16 40 H 0.08 0.80 8.14 -2.38 -0.02 0.78 16 41 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 42 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 43 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 44 H 0.09 0.70 7.86 -2.39 -0.02 0.69 16 45 H 0.09 0.61 7.73 -2.39 -0.02 0.59 16 Total: -1.00 -71.57 367.12 4.59 -66.98 By element: Atomic # 1 Polarization: 28.03 SS G_CDS: 0.25 Total: 28.28 kcal Atomic # 6 Polarization: -43.39 SS G_CDS: 4.42 Total: -38.97 kcal Atomic # 7 Polarization: -66.67 SS G_CDS: -1.85 Total: -68.52 kcal Atomic # 8 Polarization: -31.16 SS G_CDS: -0.26 Total: -31.42 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 2.03 Total: 43.65 kcal Total: -71.57 4.59 -66.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299259794.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.025 kcal (2) G-P(sol) polarization free energy of solvation -71.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds