Wall clock time and date at job start Tue Mar 31 2020 10:44:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31555 * 1 3 3 Si 1.86802 * 119.99483 * 2 1 4 4 H 1.48494 * 109.47158 * 239.99468 * 3 2 1 5 5 H 1.48503 * 109.47340 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.46979 * 119.99607 * 3 2 1 7 7 C 1.38647 * 120.00596 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00391 * 180.02562 * 7 2 1 9 9 O 1.34830 * 119.99845 * 0.02562 * 7 2 1 10 10 C 1.35749 * 117.00085 * 185.40750 * 9 7 2 11 11 C 1.38956 * 120.03471 * 185.88897 * 10 9 7 12 12 C 1.38122 * 120.07023 * 179.97438 * 11 10 9 13 13 C 1.38202 * 120.14213 * 359.78998 * 12 11 10 14 14 C 1.38923 * 120.06503 * 0.46612 * 13 12 11 15 15 N 1.39921 * 120.03812 * 179.78401 * 14 13 12 16 16 C 1.34772 * 120.00052 * 326.13118 * 15 14 13 17 17 O 1.21289 * 120.00233 * 354.63227 * 16 15 14 18 18 C 1.50701 * 119.99961 * 174.90785 * 16 15 14 19 19 H 1.09006 * 109.47242 * 299.99353 * 18 16 15 20 20 C 1.52995 * 109.47290 * 59.99815 * 18 16 15 21 21 C 1.53005 * 109.47135 * 119.99849 * 20 18 16 22 22 C 1.52991 * 109.47227 * 299.99882 * 21 20 18 23 23 C 1.53012 * 109.47060 * 60.00150 * 22 21 20 24 24 C 1.52999 * 109.46739 * 359.97438 * 23 22 21 25 25 C 1.52998 * 109.47287 * 60.00153 * 24 23 22 26 26 C 1.52998 * 109.46868 * 60.00201 * 21 20 18 27 27 C 1.38732 * 120.03389 * 5.91406 * 10 9 7 28 28 H 0.97001 * 120.00940 * 0.02562 * 1 2 3 29 29 H 1.07995 * 119.96183 * 0.02562 * 11 10 9 30 30 H 1.08001 * 119.92782 * 180.02562 * 12 11 10 31 31 H 1.07998 * 119.96890 * 180.25407 * 13 12 11 32 32 H 0.97003 * 119.99926 * 146.12543 * 15 14 13 33 33 H 1.09001 * 109.47457 * 239.99728 * 20 18 16 34 34 H 1.08998 * 109.47293 * 359.97438 * 20 18 16 35 35 H 1.09002 * 109.46882 * 179.97438 * 21 20 18 36 36 H 1.08999 * 109.47502 * 300.00571 * 22 21 20 37 37 H 1.09001 * 109.47365 * 179.97438 * 22 21 20 38 38 H 1.09000 * 109.46989 * 240.00053 * 23 22 21 39 39 H 1.09000 * 109.46815 * 119.99885 * 23 22 21 40 40 H 1.08998 * 109.46723 * 180.02562 * 24 23 22 41 41 H 1.08997 * 109.47363 * 59.99946 * 25 24 23 42 42 H 1.09006 * 109.46882 * 179.97438 * 25 24 23 43 43 H 1.09004 * 109.47467 * 59.99846 * 26 21 20 44 44 H 1.09002 * 109.47176 * 179.97438 * 26 21 20 45 45 H 1.08005 * 120.06915 * 359.97438 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2494 1.6178 0.0000 4 1 3.1032 1.6965 -1.2124 5 1 1.2843 2.7465 -0.0006 6 1 3.1031 1.6966 1.2126 7 6 2.0089 -1.2006 0.0005 8 1 3.0890 -1.2006 0.0010 9 8 1.3349 -2.3684 0.0005 10 6 2.0696 -3.5041 0.1151 11 6 1.4547 -4.7448 -0.0006 12 6 2.2016 -5.9009 0.1153 13 6 3.5629 -5.8277 0.3422 14 6 4.1827 -4.5904 0.4640 15 7 5.5602 -4.5171 0.6982 16 6 6.1674 -5.4582 1.4479 17 8 5.5072 -6.3131 1.9996 18 6 7.6660 -5.4448 1.6056 19 1 8.1354 -5.5446 0.6269 20 6 8.0995 -4.1250 2.2469 21 6 8.8179 -4.4113 3.5672 22 6 7.8702 -5.1509 4.5134 23 6 7.4366 -6.4708 3.8722 24 6 8.0949 -6.6105 2.4981 25 6 9.6165 -6.5967 2.6577 26 6 10.0504 -5.2774 3.2998 27 6 3.4350 -3.4272 0.3482 28 1 -0.4851 0.8400 -0.0004 29 1 0.3918 -4.8052 -0.1821 30 1 1.7214 -6.8640 0.0246 31 1 4.1449 -6.7334 0.4282 32 1 6.0782 -3.7888 0.3210 33 1 8.7748 -3.5980 1.5728 34 1 7.2216 -3.5077 2.4369 35 1 9.1271 -3.4710 4.0238 36 1 6.9921 -4.5339 4.7039 37 1 8.3820 -5.3552 5.4539 38 1 6.3527 -6.4805 3.7581 39 1 7.7425 -7.3014 4.5082 40 1 7.7857 -7.5505 2.0411 41 1 9.9227 -7.4274 3.2934 42 1 10.0854 -6.6967 1.6788 43 1 10.7256 -4.7504 2.6256 44 1 10.5624 -5.4810 4.2403 45 1 3.9152 -2.4640 0.4384 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000315150835.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:44:58 Heat of formation + Delta-G solvation = -54.681639 kcal Electronic energy + Delta-G solvation = -26420.762933 eV Core-core repulsion = 22788.783517 eV Total energy + Delta-G solvation = -3631.979415 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.31511 -39.46921 -38.34490 -36.36775 -34.30780 -32.27847 -31.71453 -31.45033 -30.90925 -29.23561 -28.40094 -25.34086 -24.12518 -22.68671 -22.40782 -21.81931 -21.50828 -19.94012 -18.05542 -17.87763 -16.98404 -16.69521 -16.68347 -15.91226 -15.39805 -15.20463 -15.00578 -14.67444 -14.17704 -13.92051 -13.57156 -13.32842 -12.95357 -12.88889 -12.49276 -12.36037 -12.23010 -12.17461 -12.16316 -12.13442 -11.95095 -11.68798 -11.48857 -11.14566 -10.95733 -10.86540 -10.80190 -10.48497 -10.28359 -10.04424 -10.01677 -9.79744 -9.54580 -9.13883 -8.80714 -7.72505 -7.15356 -6.45498 -4.05443 1.97606 2.37646 2.87143 3.10855 3.12345 3.15022 3.27465 3.95026 4.25405 4.39288 4.44491 4.59693 4.86041 4.99032 5.02986 5.07683 5.08558 5.10006 5.15325 5.22476 5.27631 5.31064 5.37615 5.48415 5.56524 5.70596 5.78184 5.86203 5.88075 5.98749 6.01619 6.07623 6.08620 6.16260 6.21319 6.25358 6.29152 6.30642 6.50096 6.65062 6.98077 7.00308 7.11970 7.31117 7.41838 7.71892 7.82061 7.98481 8.36034 8.99673 9.70331 10.72523 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.015861 B = 0.003441 C = 0.002968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.899838 B = 8135.238373 C = 9430.357130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.040 3.960 3 Si 0.939 3.061 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.393 4.393 8 H 0.089 0.911 9 O -0.176 6.176 10 C 0.168 3.832 11 C -0.201 4.201 12 C -0.063 4.063 13 C -0.206 4.206 14 C 0.181 3.819 15 N -0.671 5.671 16 C 0.516 3.484 17 O -0.514 6.514 18 C -0.101 4.101 19 H 0.097 0.903 20 C -0.110 4.110 21 C -0.085 4.085 22 C -0.116 4.116 23 C -0.127 4.127 24 C -0.063 4.063 25 C -0.114 4.114 26 C -0.113 4.113 27 C -0.257 4.257 28 H 0.271 0.729 29 H 0.118 0.882 30 H 0.115 0.885 31 H 0.118 0.882 32 H 0.405 0.595 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.060 0.940 37 H 0.059 0.941 38 H 0.093 0.907 39 H 0.056 0.944 40 H 0.076 0.924 41 H 0.064 0.936 42 H 0.061 0.939 43 H 0.061 0.939 44 H 0.061 0.939 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.614 -9.111 4.153 22.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.164 4.164 3 Si 0.764 3.236 4 H -0.195 1.195 5 H -0.202 1.202 6 H -0.196 1.196 7 C -0.469 4.469 8 H 0.107 0.893 9 O -0.079 6.079 10 C 0.114 3.886 11 C -0.221 4.221 12 C -0.082 4.082 13 C -0.227 4.227 14 C 0.088 3.912 15 N -0.315 5.315 16 C 0.303 3.697 17 O -0.389 6.389 18 C -0.122 4.122 19 H 0.115 0.885 20 C -0.148 4.148 21 C -0.103 4.103 22 C -0.153 4.153 23 C -0.164 4.164 24 C -0.082 4.082 25 C -0.151 4.151 26 C -0.151 4.151 27 C -0.279 4.279 28 H 0.080 0.920 29 H 0.136 0.864 30 H 0.133 0.867 31 H 0.136 0.864 32 H 0.240 0.760 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.111 0.889 39 H 0.075 0.925 40 H 0.094 0.906 41 H 0.083 0.917 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.080 0.920 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 18.750 -9.520 4.531 21.511 hybrid contribution 0.791 1.318 -0.182 1.548 sum 19.540 -8.201 4.349 21.634 Atomic orbital electron populations 1.70021 1.05936 1.27773 1.45994 1.25268 0.95823 0.98770 0.96574 0.85811 0.78748 0.79940 0.79091 1.19523 1.20242 1.19568 1.21216 0.91616 0.80918 1.53147 0.89341 1.84019 1.33920 1.11364 1.78641 1.19085 0.89523 0.88099 0.91885 1.20247 1.00124 0.90016 1.11694 1.20526 0.93180 0.96909 0.97586 1.20518 0.95147 0.95839 1.11161 1.17421 0.81782 0.93943 0.98010 1.43564 1.07681 1.28655 1.51587 1.20714 0.90154 0.81110 0.77696 1.90643 1.66398 1.36895 1.45004 1.21346 0.91760 0.97941 1.01147 0.88529 1.21618 1.00887 0.95296 0.97023 1.21014 0.95361 0.98551 0.95416 1.21572 0.98831 0.97053 0.97875 1.21795 1.03225 0.96631 0.94788 1.20761 0.94591 0.96954 0.95875 1.21562 0.95163 0.97692 1.00701 1.21551 0.96892 0.96004 1.00617 1.20817 0.94418 0.97277 1.15370 0.91951 0.86416 0.86666 0.86433 0.75977 0.90911 0.91132 0.90984 0.92120 0.92252 0.88900 0.92494 0.90585 0.91749 0.92051 0.92051 0.92034 0.85334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.21 13.67 55.48 0.76 -24.45 16 2 C 0.04 1.09 5.49 -17.52 -0.10 1.00 16 3 Si 0.94 20.22 29.55 -169.99 -5.02 15.20 16 4 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 5 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 6 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 7 C -0.39 -10.86 9.44 30.88 0.29 -10.57 16 8 H 0.09 2.24 5.30 -52.48 -0.28 1.96 16 9 O -0.18 -5.01 9.76 0.05 0.00 -5.01 16 10 C 0.17 4.09 6.64 -39.13 -0.26 3.83 16 11 C -0.20 -4.35 9.99 -39.36 -0.39 -4.74 16 12 C -0.06 -1.20 10.03 -39.64 -0.40 -1.60 16 13 C -0.21 -3.95 8.65 -39.34 -0.34 -4.29 16 14 C 0.18 3.46 6.26 -83.72 -0.52 2.94 16 15 N -0.67 -10.01 5.10 -9.88 -0.05 -10.06 16 16 C 0.52 7.38 6.34 -10.99 -0.07 7.31 16 17 O -0.51 -9.00 11.37 5.55 0.06 -8.94 16 18 C -0.10 -1.03 2.57 -91.80 -0.24 -1.27 16 19 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 20 C -0.11 -1.01 5.15 -26.73 -0.14 -1.15 16 21 C -0.08 -0.75 3.19 -90.62 -0.29 -1.04 16 22 C -0.12 -1.19 5.71 -26.73 -0.15 -1.34 16 23 C -0.13 -1.45 5.39 -26.73 -0.14 -1.59 16 24 C -0.06 -0.64 2.36 -90.65 -0.21 -0.86 16 25 C -0.11 -0.90 5.71 -26.73 -0.15 -1.05 16 26 C -0.11 -0.85 5.71 -26.73 -0.15 -1.00 16 27 C -0.26 -5.57 9.05 -39.21 -0.35 -5.93 16 28 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 29 H 0.12 2.43 8.06 -52.49 -0.42 2.01 16 30 H 0.12 1.83 8.06 -52.49 -0.42 1.40 16 31 H 0.12 2.19 6.45 -52.49 -0.34 1.85 16 32 H 0.41 4.86 8.64 -40.82 -0.35 4.51 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.75 7.44 -51.93 -0.39 0.36 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.09 1.35 5.50 -51.93 -0.29 1.06 16 39 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.08 0.84 8.10 -51.93 -0.42 0.42 16 41 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 45 H 0.13 2.73 5.71 -52.48 -0.30 2.43 16 LS Contribution 351.46 15.07 5.30 5.30 Total: -1.00 -31.80 351.46 -9.15 -40.95 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: -6.57 Total: 8.37 kcal Atomic # 6 Polarization: -17.73 SS G_CDS: -3.62 Total: -21.35 kcal Atomic # 7 Polarization: -35.22 SS G_CDS: 0.71 Total: -34.51 kcal Atomic # 8 Polarization: -14.01 SS G_CDS: 0.06 Total: -13.95 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.80 -9.15 -40.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315150835.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.734 kcal (2) G-P(sol) polarization free energy of solvation -31.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds