Wall clock time and date at job start Tue Mar 31 2020 10:44:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31555 * 1 3 3 Si 1.86802 * 119.99483 * 2 1 4 4 H 1.48494 * 109.47158 * 239.99468 * 3 2 1 5 5 H 1.48503 * 109.47340 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.46979 * 119.99607 * 3 2 1 7 7 C 1.38647 * 120.00596 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00391 * 180.02562 * 7 2 1 9 9 O 1.34830 * 119.99845 * 0.02562 * 7 2 1 10 10 C 1.35749 * 117.00085 * 185.40750 * 9 7 2 11 11 C 1.38956 * 120.03471 * 185.88897 * 10 9 7 12 12 C 1.38122 * 120.07023 * 179.97438 * 11 10 9 13 13 C 1.38202 * 120.14213 * 359.78998 * 12 11 10 14 14 C 1.38923 * 120.06503 * 0.46612 * 13 12 11 15 15 N 1.39921 * 120.03812 * 179.78401 * 14 13 12 16 16 C 1.34772 * 120.00052 * 326.13118 * 15 14 13 17 17 O 1.21289 * 120.00233 * 354.63227 * 16 15 14 18 18 C 1.50701 * 119.99961 * 174.90785 * 16 15 14 19 19 H 1.09006 * 109.47242 * 299.99353 * 18 16 15 20 20 C 1.52995 * 109.47290 * 59.99815 * 18 16 15 21 21 C 1.53005 * 109.47135 * 119.99849 * 20 18 16 22 22 C 1.52991 * 109.47227 * 299.99882 * 21 20 18 23 23 C 1.53012 * 109.47060 * 60.00150 * 22 21 20 24 24 C 1.52999 * 109.46739 * 359.97438 * 23 22 21 25 25 C 1.52998 * 109.47287 * 60.00153 * 24 23 22 26 26 C 1.52998 * 109.46868 * 60.00201 * 21 20 18 27 27 C 1.38732 * 120.03389 * 5.91406 * 10 9 7 28 28 H 0.97001 * 120.00940 * 0.02562 * 1 2 3 29 29 H 1.07995 * 119.96183 * 0.02562 * 11 10 9 30 30 H 1.08001 * 119.92782 * 180.02562 * 12 11 10 31 31 H 1.07998 * 119.96890 * 180.25407 * 13 12 11 32 32 H 0.97003 * 119.99926 * 146.12543 * 15 14 13 33 33 H 1.09001 * 109.47457 * 239.99728 * 20 18 16 34 34 H 1.08998 * 109.47293 * 359.97438 * 20 18 16 35 35 H 1.09002 * 109.46882 * 179.97438 * 21 20 18 36 36 H 1.08999 * 109.47502 * 300.00571 * 22 21 20 37 37 H 1.09001 * 109.47365 * 179.97438 * 22 21 20 38 38 H 1.09000 * 109.46989 * 240.00053 * 23 22 21 39 39 H 1.09000 * 109.46815 * 119.99885 * 23 22 21 40 40 H 1.08998 * 109.46723 * 180.02562 * 24 23 22 41 41 H 1.08997 * 109.47363 * 59.99946 * 25 24 23 42 42 H 1.09006 * 109.46882 * 179.97438 * 25 24 23 43 43 H 1.09004 * 109.47467 * 59.99846 * 26 21 20 44 44 H 1.09002 * 109.47176 * 179.97438 * 26 21 20 45 45 H 1.08005 * 120.06915 * 359.97438 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2494 1.6178 0.0000 4 1 3.1032 1.6965 -1.2124 5 1 1.2843 2.7465 -0.0006 6 1 3.1031 1.6966 1.2126 7 6 2.0089 -1.2006 0.0005 8 1 3.0890 -1.2006 0.0010 9 8 1.3349 -2.3684 0.0005 10 6 2.0696 -3.5041 0.1151 11 6 1.4547 -4.7448 -0.0006 12 6 2.2016 -5.9009 0.1153 13 6 3.5629 -5.8277 0.3422 14 6 4.1827 -4.5904 0.4640 15 7 5.5602 -4.5171 0.6982 16 6 6.1674 -5.4582 1.4479 17 8 5.5072 -6.3131 1.9996 18 6 7.6660 -5.4448 1.6056 19 1 8.1354 -5.5446 0.6269 20 6 8.0995 -4.1250 2.2469 21 6 8.8179 -4.4113 3.5672 22 6 7.8702 -5.1509 4.5134 23 6 7.4366 -6.4708 3.8722 24 6 8.0949 -6.6105 2.4981 25 6 9.6165 -6.5967 2.6577 26 6 10.0504 -5.2774 3.2998 27 6 3.4350 -3.4272 0.3482 28 1 -0.4851 0.8400 -0.0004 29 1 0.3918 -4.8052 -0.1821 30 1 1.7214 -6.8640 0.0246 31 1 4.1449 -6.7334 0.4282 32 1 6.0782 -3.7888 0.3210 33 1 8.7748 -3.5980 1.5728 34 1 7.2216 -3.5077 2.4369 35 1 9.1271 -3.4710 4.0238 36 1 6.9921 -4.5339 4.7039 37 1 8.3820 -5.3552 5.4539 38 1 6.3527 -6.4805 3.7581 39 1 7.7425 -7.3014 4.5082 40 1 7.7857 -7.5505 2.0411 41 1 9.9227 -7.4274 3.2934 42 1 10.0854 -6.6967 1.6788 43 1 10.7256 -4.7504 2.6256 44 1 10.5624 -5.4810 4.2403 45 1 3.9152 -2.4640 0.4384 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000315150835.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:44:57 Heat of formation + Delta-G solvation = -73.029572 kcal Electronic energy + Delta-G solvation = -26421.558559 eV Core-core repulsion = 22788.783517 eV Total energy + Delta-G solvation = -3632.775041 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.30096 -40.92511 -39.78822 -38.01753 -35.72055 -34.25202 -32.65415 -32.22801 -31.64412 -30.86593 -29.98889 -27.32256 -25.16218 -23.54631 -23.40093 -23.36982 -22.62923 -21.29926 -19.80721 -19.36404 -18.35702 -17.59725 -17.41834 -17.15744 -16.80563 -16.45973 -16.29054 -16.17997 -15.77959 -15.51625 -15.33596 -14.63328 -14.27523 -14.12243 -13.68866 -13.58886 -13.27602 -13.07411 -12.98467 -12.93272 -12.92689 -12.86397 -12.73510 -12.68956 -12.54692 -12.45780 -12.15203 -11.63778 -11.45476 -11.26599 -11.16887 -10.78242 -10.75798 -10.70175 -10.28876 -9.36454 -8.87554 -8.46821 -6.16009 0.39231 0.68239 1.35499 1.46011 1.52104 1.63761 2.05964 2.18078 2.82973 3.16034 3.43577 3.48148 3.62456 3.69555 3.96740 4.12437 4.23006 4.31044 4.32041 4.35362 4.40248 4.42382 4.43536 4.52254 4.57206 4.61156 4.62927 4.72893 4.77021 4.89406 5.01004 5.09755 5.12655 5.14536 5.20432 5.31167 5.36910 5.40064 5.45714 5.48503 5.51501 5.56240 5.57980 5.65820 5.67959 6.00732 6.16633 6.48368 6.97200 7.16440 7.76692 8.76082 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.015861 B = 0.003441 C = 0.002968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.899838 B = 8135.238373 C = 9430.357130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.022 4.022 3 Si 1.018 2.982 4 H -0.254 1.254 5 H -0.273 1.273 6 H -0.257 1.257 7 C -0.415 4.415 8 H 0.103 0.897 9 O -0.226 6.226 10 C 0.135 3.865 11 C -0.216 4.216 12 C -0.052 4.052 13 C -0.200 4.200 14 C 0.189 3.811 15 N -0.664 5.664 16 C 0.513 3.487 17 O -0.548 6.548 18 C -0.091 4.091 19 H 0.126 0.874 20 C -0.110 4.110 21 C -0.085 4.085 22 C -0.116 4.116 23 C -0.128 4.128 24 C -0.063 4.063 25 C -0.108 4.108 26 C -0.109 4.109 27 C -0.262 4.262 28 H 0.273 0.727 29 H 0.118 0.882 30 H 0.153 0.847 31 H 0.130 0.870 32 H 0.421 0.579 33 H 0.102 0.898 34 H 0.052 0.948 35 H 0.082 0.918 36 H 0.037 0.963 37 H 0.070 0.930 38 H 0.056 0.944 39 H 0.061 0.939 40 H 0.064 0.936 41 H 0.068 0.932 42 H 0.077 0.923 43 H 0.079 0.921 44 H 0.067 0.933 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.731 -9.484 4.003 25.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.220 4.220 3 Si 0.837 3.163 4 H -0.178 1.178 5 H -0.198 1.198 6 H -0.182 1.182 7 C -0.491 4.491 8 H 0.120 0.880 9 O -0.133 6.133 10 C 0.083 3.917 11 C -0.236 4.236 12 C -0.070 4.070 13 C -0.221 4.221 14 C 0.094 3.906 15 N -0.310 5.310 16 C 0.303 3.697 17 O -0.425 6.425 18 C -0.112 4.112 19 H 0.144 0.856 20 C -0.148 4.148 21 C -0.103 4.103 22 C -0.154 4.154 23 C -0.165 4.165 24 C -0.082 4.082 25 C -0.146 4.146 26 C -0.147 4.147 27 C -0.284 4.284 28 H 0.082 0.918 29 H 0.137 0.863 30 H 0.171 0.829 31 H 0.148 0.852 32 H 0.259 0.741 33 H 0.120 0.880 34 H 0.071 0.929 35 H 0.100 0.900 36 H 0.056 0.944 37 H 0.088 0.912 38 H 0.074 0.926 39 H 0.080 0.920 40 H 0.083 0.917 41 H 0.087 0.913 42 H 0.096 0.904 43 H 0.097 0.903 44 H 0.086 0.914 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 22.926 -9.933 4.379 25.366 hybrid contribution -0.427 1.116 -0.064 1.196 sum 22.500 -8.817 4.316 24.548 Atomic orbital electron populations 1.70178 1.08105 1.28934 1.48612 1.26605 0.96827 1.02786 0.95742 0.84660 0.77442 0.74184 0.80020 1.17803 1.19806 1.18163 1.21774 0.92526 0.81355 1.53420 0.87969 1.83984 1.35589 1.12517 1.81165 1.19608 0.90820 0.87984 0.93245 1.20474 1.00639 0.90108 1.12370 1.20915 0.93096 0.97533 0.95490 1.20834 0.95433 0.96283 1.09569 1.17480 0.83768 0.93039 0.96302 1.43597 1.05994 1.29660 1.51733 1.21586 0.91908 0.79892 0.76325 1.90642 1.67575 1.38168 1.46068 1.21423 0.88196 0.98779 1.02833 0.85647 1.21669 1.00855 0.94399 0.97867 1.21043 0.95468 0.99095 0.94699 1.21573 0.98584 0.96275 0.98970 1.21734 1.01022 0.97576 0.96194 1.20776 0.96423 0.96333 0.94706 1.21543 0.92881 0.98284 1.01871 1.21547 0.96274 0.95419 1.01410 1.20851 0.93711 0.98257 1.15535 0.91804 0.86344 0.82937 0.85237 0.74126 0.87993 0.92939 0.90006 0.94380 0.91172 0.92569 0.91999 0.91725 0.91305 0.90401 0.90272 0.91384 0.85378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.29 13.67 21.61 0.30 -56.00 16 2 C -0.02 -1.23 5.49 84.83 0.47 -0.77 16 3 Si 1.02 41.90 29.55 68.60 2.03 43.93 16 4 H -0.25 -9.67 7.11 99.48 0.71 -8.96 16 5 H -0.27 -10.91 7.11 99.48 0.71 -10.21 16 6 H -0.26 -9.91 7.11 99.48 0.71 -9.21 16 7 C -0.41 -23.85 9.44 67.92 0.64 -23.21 16 8 H 0.10 5.31 5.30 -2.91 -0.02 5.29 16 9 O -0.23 -13.61 9.76 -22.73 -0.22 -13.83 16 10 C 0.13 6.81 6.64 22.56 0.15 6.96 16 11 C -0.22 -9.54 9.99 22.41 0.22 -9.32 16 12 C -0.05 -1.91 10.03 22.23 0.22 -1.69 16 13 C -0.20 -7.44 8.65 22.43 0.19 -7.24 16 14 C 0.19 7.07 6.26 38.14 0.24 7.31 16 15 N -0.66 -18.80 5.10 -303.55 -1.55 -20.35 16 16 C 0.51 13.90 6.34 87.66 0.56 14.45 16 17 O -0.55 -18.85 11.37 -3.06 -0.03 -18.89 16 18 C -0.09 -1.62 2.57 -11.56 -0.03 -1.65 16 19 H 0.13 1.58 8.14 -2.38 -0.02 1.56 16 20 C -0.11 -1.68 5.15 30.59 0.16 -1.52 16 21 C -0.08 -1.23 3.19 -10.80 -0.03 -1.27 16 22 C -0.12 -2.25 5.71 30.60 0.17 -2.07 16 23 C -0.13 -2.81 5.39 30.60 0.16 -2.65 16 24 C -0.06 -1.15 2.36 -10.81 -0.03 -1.18 16 25 C -0.11 -1.31 5.71 30.59 0.17 -1.13 16 26 C -0.11 -1.18 5.71 30.59 0.17 -1.01 16 27 C -0.26 -11.52 9.05 22.51 0.20 -11.31 16 28 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 29 H 0.12 5.09 8.06 -2.91 -0.02 5.06 16 30 H 0.15 4.44 8.06 -2.91 -0.02 4.42 16 31 H 0.13 4.58 6.45 -2.91 -0.02 4.56 16 32 H 0.42 9.20 8.64 -92.71 -0.80 8.40 16 33 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.05 1.01 7.44 -2.39 -0.02 0.99 16 35 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.06 1.66 5.50 -2.39 -0.01 1.65 16 39 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.06 1.32 8.10 -2.39 -0.02 1.30 16 41 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 42 H 0.08 0.73 8.14 -2.38 -0.02 0.71 16 43 H 0.08 0.64 8.14 -2.38 -0.02 0.62 16 44 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 45 H 0.13 5.53 5.71 -2.91 -0.02 5.52 16 Total: -1.00 -73.84 351.46 4.38 -69.46 By element: Atomic # 1 Polarization: 32.77 SS G_CDS: 0.21 Total: 32.97 kcal Atomic # 6 Polarization: -40.95 SS G_CDS: 3.65 Total: -37.30 kcal Atomic # 7 Polarization: -75.09 SS G_CDS: -1.25 Total: -76.34 kcal Atomic # 8 Polarization: -32.46 SS G_CDS: -0.26 Total: -32.72 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 2.03 Total: 43.93 kcal Total: -73.84 4.38 -69.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315150835.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.569 kcal (2) G-P(sol) polarization free energy of solvation -73.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds