Wall clock time and date at job start Tue Mar 31 2020 10:34:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31570 * 1 3 3 Si 1.86804 * 119.99663 * 2 1 4 4 H 1.48500 * 109.47127 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47200 * 299.99851 * 3 2 1 6 6 H 1.48496 * 109.47457 * 60.00046 * 3 2 1 7 7 C 1.38629 * 120.00164 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99979 * 179.97438 * 7 2 1 9 9 O 1.34809 * 120.00076 * 0.27162 * 7 2 1 10 10 C 1.35779 * 117.00168 * 185.13137 * 9 7 2 11 11 C 1.38911 * 120.00051 * 185.64025 * 10 9 7 12 12 C 1.37998 * 119.99977 * 179.76862 * 11 10 9 13 13 C 1.38917 * 120.00163 * 0.51341 * 12 11 10 14 14 N 1.39994 * 120.00444 * 179.76506 * 13 12 11 15 15 C 1.34775 * 119.99957 * 326.28479 * 14 13 12 16 16 O 1.21287 * 119.99998 * 354.79774 * 15 14 13 17 17 C 1.50699 * 119.99887 * 174.79299 * 15 14 13 18 18 H 1.08999 * 109.47306 * 300.00627 * 17 15 14 19 19 C 1.52998 * 109.46973 * 60.00327 * 17 15 14 20 20 C 1.52999 * 109.47230 * 119.99897 * 19 17 15 21 21 C 1.52999 * 109.46988 * 59.99772 * 20 19 17 22 22 C 1.52998 * 109.47321 * 300.00172 * 21 20 19 23 23 C 1.52993 * 109.46903 * 0.02562 * 22 21 20 24 24 C 1.52998 * 109.47416 * 299.99681 * 23 22 21 25 25 C 1.53003 * 109.47036 * 299.99815 * 20 19 17 26 26 C 1.38926 * 119.99399 * 359.74161 * 13 12 11 27 27 C 1.37992 * 120.00069 * 0.02562 * 26 13 12 28 28 H 0.96997 * 120.00200 * 0.02562 * 1 2 3 29 29 H 1.07996 * 119.99538 * 0.03209 * 11 10 9 30 30 H 1.08004 * 119.99855 * 180.23647 * 12 11 10 31 31 H 0.97006 * 119.99770 * 146.28390 * 14 13 12 32 32 H 1.08997 * 109.47335 * 239.99664 * 19 17 15 33 33 H 1.08999 * 109.47537 * 359.97438 * 19 17 15 34 34 H 1.08997 * 109.47350 * 180.02562 * 20 19 17 35 35 H 1.09005 * 109.47177 * 60.00798 * 21 20 19 36 36 H 1.09005 * 109.47089 * 180.02562 * 21 20 19 37 37 H 1.09006 * 109.46918 * 239.99849 * 22 21 20 38 38 H 1.08995 * 109.46984 * 120.00352 * 22 21 20 39 39 H 1.09003 * 109.47206 * 180.02562 * 23 22 21 40 40 H 1.08996 * 109.47154 * 300.00535 * 24 23 22 41 41 H 1.09000 * 109.47707 * 180.02562 * 24 23 22 42 42 H 1.09005 * 109.47118 * 179.97438 * 25 20 19 43 43 H 1.08993 * 109.47124 * 300.00000 * 25 20 19 44 44 H 1.08005 * 119.99665 * 180.02562 * 26 13 12 45 45 H 1.07998 * 120.00192 * 180.02562 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 3.7096 1.3466 -0.0006 5 1 1.8909 2.3965 -1.2125 6 1 1.8909 2.3965 1.2124 7 6 2.0089 -1.2005 -0.0005 8 1 3.0890 -1.2005 -0.0010 9 8 1.3349 -2.3680 -0.0066 10 6 2.0698 -3.5046 0.1014 11 6 1.4534 -4.7440 -0.0156 12 6 2.2011 -5.8991 0.0894 13 6 3.5684 -5.8227 0.3228 14 7 4.3261 -6.9946 0.4343 15 6 3.7823 -8.0990 0.9828 16 8 2.6705 -8.0521 1.4652 17 6 4.5557 -9.3924 0.9967 18 1 4.7827 -9.6910 -0.0267 19 6 5.8601 -9.1983 1.7725 20 6 5.8919 -10.1568 2.9646 21 6 5.8075 -11.5992 2.4615 22 6 4.5032 -11.7934 1.6858 23 6 3.7183 -10.4801 1.6711 24 6 3.3997 -10.0603 3.1074 25 6 4.7038 -9.8669 3.8840 26 6 4.1839 -4.5833 0.4451 27 6 3.4369 -3.4282 0.3353 28 1 -0.4850 0.8400 -0.0004 29 1 0.3898 -4.8034 -0.1931 30 1 1.7225 -6.8627 -0.0054 31 1 5.2425 -7.0116 0.1166 32 1 6.7065 -9.4048 1.1176 33 1 5.9204 -8.1705 2.1305 34 1 6.8210 -10.0182 3.5175 35 1 6.6540 -11.8058 1.8066 36 1 5.8298 -12.2821 3.3108 37 1 3.9063 -12.5685 2.1666 38 1 4.7301 -12.0921 0.6624 39 1 2.7888 -10.6185 1.1188 40 1 2.8028 -10.8350 3.5885 41 1 2.8402 -9.1249 3.0970 42 1 4.7263 -10.5501 4.7331 43 1 4.7640 -8.8393 4.2423 44 1 5.2470 -4.5238 0.6262 45 1 3.9155 -2.4646 0.4300 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000315308896.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:34:51 Heat of formation + Delta-G solvation = -53.950920 kcal Electronic energy + Delta-G solvation = -26068.828149 eV Core-core repulsion = 22436.880420 eV Total energy + Delta-G solvation = -3631.947729 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 2.70 seconds Orbital eigenvalues (eV) -41.30335 -39.43515 -38.36661 -36.41237 -34.05788 -32.24556 -31.66090 -31.37459 -30.92315 -30.21029 -27.77850 -25.38506 -23.92977 -22.70818 -22.34568 -22.21176 -21.25730 -20.03445 -18.07998 -17.64657 -17.13697 -16.71779 -16.68154 -16.30020 -15.66847 -15.19969 -14.69239 -14.55813 -14.15546 -13.59481 -13.55102 -13.31123 -12.94422 -12.73862 -12.53371 -12.38816 -12.27925 -12.22835 -12.19071 -12.15388 -12.02315 -11.69581 -11.53664 -11.48919 -11.07351 -10.91908 -10.65427 -10.43941 -10.29568 -10.06423 -10.03321 -9.70060 -9.39054 -9.09603 -8.69641 -8.20036 -6.90849 -6.44158 -4.02108 2.09969 2.20503 2.89679 3.13291 3.13698 3.19357 3.32754 3.97049 4.23851 4.37664 4.42418 4.58237 4.85924 4.98124 5.00614 5.05811 5.06720 5.11425 5.13202 5.20862 5.29059 5.31746 5.34834 5.46400 5.52800 5.56604 5.73595 5.78489 5.84052 5.85758 5.98144 6.05703 6.13466 6.15903 6.19595 6.23335 6.28963 6.30106 6.51446 6.80141 6.86829 7.00434 7.17362 7.22761 7.41611 7.74031 7.80222 8.00345 8.42833 9.01316 9.72186 10.74002 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.034374 B = 0.002507 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.365639 B =11168.056718 C =11437.643645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.038 3.962 3 Si 0.941 3.059 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.390 4.390 8 H 0.092 0.908 9 O -0.177 6.177 10 C 0.146 3.854 11 C -0.177 4.177 12 C -0.067 4.067 13 C 0.038 3.962 14 N -0.662 5.662 15 C 0.511 3.489 16 O -0.520 6.520 17 C -0.100 4.100 18 H 0.095 0.905 19 C -0.108 4.108 20 C -0.085 4.085 21 C -0.113 4.113 22 C -0.114 4.114 23 C -0.063 4.063 24 C -0.127 4.127 25 C -0.115 4.115 26 C -0.092 4.092 27 C -0.219 4.219 28 H 0.269 0.731 29 H 0.120 0.880 30 H 0.124 0.876 31 H 0.400 0.600 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.060 0.940 36 H 0.061 0.939 37 H 0.064 0.936 38 H 0.060 0.940 39 H 0.076 0.924 40 H 0.056 0.944 41 H 0.093 0.907 42 H 0.058 0.942 43 H 0.059 0.941 44 H 0.109 0.891 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.785 -20.721 2.873 25.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.166 4.166 3 Si 0.766 3.234 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.467 4.467 8 H 0.109 0.891 9 O -0.081 6.081 10 C 0.092 3.908 11 C -0.197 4.197 12 C -0.087 4.087 13 C -0.054 4.054 14 N -0.307 5.307 15 C 0.298 3.702 16 O -0.396 6.396 17 C -0.122 4.122 18 H 0.113 0.887 19 C -0.146 4.146 20 C -0.103 4.103 21 C -0.151 4.151 22 C -0.152 4.152 23 C -0.082 4.082 24 C -0.165 4.165 25 C -0.153 4.153 26 C -0.112 4.112 27 C -0.238 4.238 28 H 0.079 0.921 29 H 0.138 0.862 30 H 0.142 0.858 31 H 0.235 0.765 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.083 0.917 38 H 0.079 0.921 39 H 0.094 0.906 40 H 0.075 0.925 41 H 0.112 0.888 42 H 0.077 0.923 43 H 0.078 0.922 44 H 0.127 0.873 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 12.549 -20.502 3.189 24.248 hybrid contribution 1.062 0.871 -0.141 1.381 sum 13.611 -19.630 3.048 24.081 Atomic orbital electron populations 1.70054 1.05948 1.27547 1.46145 1.25290 0.95844 0.98838 0.96629 0.85650 0.79097 0.80435 0.78246 1.19128 1.20160 1.20158 1.21347 0.91760 0.80884 1.52692 0.89082 1.84003 1.34171 1.11375 1.78515 1.19414 0.90313 0.88039 0.93006 1.20123 0.99978 0.89597 1.10037 1.20586 0.92194 0.97814 0.98151 1.17255 0.91716 0.84734 1.11691 1.43308 1.16138 1.10449 1.60783 1.20667 0.87152 0.85058 0.77331 1.90643 1.20139 1.84801 1.44036 1.21323 0.96237 0.93227 1.01386 0.88678 1.21599 0.95693 1.00240 0.97095 1.21014 0.98600 0.94812 0.95903 1.21550 0.97617 0.96134 0.99754 1.21566 0.96406 0.96985 1.00206 1.20753 0.97698 0.92789 0.96951 1.21794 0.97189 1.03593 0.93896 1.21567 0.94711 1.01329 0.97648 1.20476 0.98686 0.90933 1.01108 1.20978 0.94172 0.98368 1.10326 0.92067 0.86166 0.85846 0.76547 0.91076 0.91284 0.91104 0.92088 0.92059 0.91740 0.92072 0.90561 0.92527 0.88820 0.92290 0.92209 0.87252 0.85151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.43 13.67 55.48 0.76 -24.67 16 2 C 0.04 1.05 5.49 -17.52 -0.10 0.96 16 3 Si 0.94 20.50 29.55 -169.99 -5.02 15.47 16 4 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 5 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 6 H -0.28 -5.91 7.11 56.52 0.40 -5.50 16 7 C -0.39 -10.91 9.44 30.88 0.29 -10.62 16 8 H 0.09 2.34 5.29 -52.48 -0.28 2.06 16 9 O -0.18 -5.10 9.75 0.02 0.00 -5.10 16 10 C 0.15 3.58 6.65 -39.08 -0.26 3.32 16 11 C -0.18 -3.94 9.98 -39.42 -0.39 -4.33 16 12 C -0.07 -1.33 8.65 -39.42 -0.34 -1.67 16 13 C 0.04 0.68 6.28 -83.62 -0.52 0.16 16 14 N -0.66 -8.94 5.11 -9.82 -0.05 -8.99 16 15 C 0.51 6.96 6.34 -10.99 -0.07 6.89 16 16 O -0.52 -9.04 11.36 5.55 0.06 -8.97 16 17 C -0.10 -0.97 2.57 -91.80 -0.24 -1.20 16 18 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 19 C -0.11 -0.88 5.14 -26.73 -0.14 -1.01 16 20 C -0.08 -0.67 3.19 -90.62 -0.29 -0.96 16 21 C -0.11 -0.79 5.71 -26.73 -0.15 -0.94 16 22 C -0.11 -0.87 5.71 -26.74 -0.15 -1.02 16 23 C -0.06 -0.63 2.36 -90.65 -0.21 -0.84 16 24 C -0.13 -1.41 5.38 -26.73 -0.14 -1.56 16 25 C -0.11 -1.10 5.71 -26.73 -0.15 -1.26 16 26 C -0.09 -1.66 9.96 -39.42 -0.39 -2.05 16 27 C -0.22 -4.72 9.13 -39.42 -0.36 -5.08 16 28 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 29 H 0.12 2.59 8.06 -52.49 -0.42 2.17 16 30 H 0.12 2.36 6.44 -52.48 -0.34 2.02 16 31 H 0.40 4.02 8.64 -40.82 -0.35 3.66 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.62 7.44 -51.93 -0.39 0.24 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.08 0.84 8.10 -51.93 -0.42 0.42 16 40 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.09 1.34 5.51 -51.93 -0.29 1.06 16 42 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.11 1.61 8.06 -52.48 -0.42 1.18 16 45 H 0.13 2.79 5.71 -52.49 -0.30 2.49 16 LS Contribution 351.44 15.07 5.30 5.30 Total: -1.00 -32.06 351.44 -9.15 -41.21 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: -6.57 Total: 6.98 kcal Atomic # 6 Polarization: -17.60 SS G_CDS: -3.63 Total: -21.23 kcal Atomic # 7 Polarization: -34.37 SS G_CDS: 0.71 Total: -33.66 kcal Atomic # 8 Polarization: -14.13 SS G_CDS: 0.06 Total: -14.07 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.06 -9.15 -41.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315308896.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.742 kcal (2) G-P(sol) polarization free energy of solvation -32.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.70 seconds