Wall clock time and date at job start Tue Mar 31 2020 11:33:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37979 * 119.88099 * 2 1 4 4 C 1.38241 * 120.35533 * 180.02562 * 3 2 1 5 5 C 1.38389 * 119.76352 * 0.19870 * 4 3 2 6 6 C 1.37701 * 119.97893 * 359.97438 * 5 4 3 7 7 C 1.38919 * 120.78900 * 359.62094 * 6 5 4 8 8 O 1.36137 * 111.22620 * 180.64074 * 7 6 5 9 9 C 1.43775 * 109.23694 * 340.96420 * 8 7 6 10 10 H 1.08996 * 110.74585 * 146.26474 * 9 8 7 11 11 C 1.50702 * 110.74163 * 269.42428 * 9 8 7 12 12 O 1.21291 * 120.00436 * 4.61385 * 11 9 8 13 13 N 1.34777 * 119.99501 * 184.61594 * 11 9 8 14 14 C 1.37099 * 120.00352 * 356.03038 * 13 11 9 15 15 H 1.07999 * 119.99645 * 235.69174 * 14 13 11 16 16 C 1.38945 * 119.99992 * 55.69281 * 14 13 11 17 17 N 1.31411 * 120.00292 * 21.91913 * 16 14 13 18 18 Si 1.86799 * 120.00156 * 201.92464 * 16 14 13 19 19 H 1.48504 * 109.47441 * 89.99323 * 18 16 14 20 20 H 1.48496 * 109.47415 * 209.99667 * 18 16 14 21 21 H 1.48504 * 109.46836 * 330.00026 * 18 16 14 22 22 C 1.46503 * 119.99842 * 176.03049 * 13 11 9 23 23 C 1.55239 * 110.46921 * 234.80820 * 22 13 11 24 24 C 1.54889 * 102.59068 * 203.39361 * 23 22 13 25 25 C 1.54264 * 104.31105 * 37.93014 * 24 23 22 26 26 C 1.53884 * 106.59930 * 336.32614 * 25 24 23 27 27 C 1.51641 * 132.17017 * 179.03190 * 6 5 4 28 28 H 1.09000 * 109.47182 * 269.97847 * 1 2 3 29 29 H 1.09002 * 109.47152 * 29.98538 * 1 2 3 30 30 H 1.09005 * 109.46681 * 149.97958 * 1 2 3 31 31 H 1.07999 * 119.81690 * 0.02562 * 3 2 1 32 32 H 1.07995 * 120.11364 * 180.22255 * 4 3 2 33 33 H 1.07999 * 120.01130 * 179.97438 * 5 4 3 34 34 H 0.96996 * 120.00545 * 184.91068 * 17 16 14 35 35 H 1.08997 * 110.43625 * 357.45690 * 22 13 11 36 36 H 1.08999 * 110.89637 * 85.10233 * 23 22 13 37 37 H 1.09001 * 110.76724 * 321.62515 * 23 22 13 38 38 H 1.09000 * 110.48253 * 279.19048 * 24 23 22 39 39 H 1.08994 * 110.48701 * 156.67532 * 24 23 22 40 40 H 1.09000 * 110.03407 * 95.60531 * 25 24 23 41 41 H 1.08997 * 110.03239 * 216.99317 * 25 24 23 42 42 H 1.08994 * 110.03094 * 119.28766 * 26 25 24 43 43 H 1.09000 * 110.02717 * 240.71699 * 26 25 24 44 44 H 1.09010 * 110.93665 * 77.73818 * 27 6 5 45 45 H 1.08996 * 110.94228 * 314.05822 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1944 1.1964 0.0000 4 6 3.5768 1.2078 -0.0005 5 6 4.2737 0.0122 -0.0052 6 6 3.5897 -1.1829 -0.0088 7 6 2.2008 -1.2073 0.0001 8 8 1.7303 -2.4848 0.0087 9 6 2.7679 -3.3748 -0.4367 10 1 2.6995 -4.3345 0.0753 11 6 2.7046 -3.5632 -1.9305 12 8 1.9064 -2.9298 -2.5884 13 7 3.5350 -4.4356 -2.5354 14 6 4.4916 -5.0912 -1.8042 15 1 5.5305 -5.0253 -2.0919 16 6 4.1245 -5.8403 -0.6930 17 7 2.8928 -6.2831 -0.5768 18 14 5.3820 -6.2179 0.6357 19 1 5.3567 -5.1438 1.6609 20 1 5.0534 -7.5183 1.2731 21 1 6.7357 -6.2917 0.0296 22 6 3.4153 -4.6834 -3.9744 23 6 3.2384 -6.2006 -4.2511 24 6 3.7337 -6.3373 -5.7123 25 6 4.9307 -5.3684 -5.8014 26 6 4.7283 -4.3168 -4.6963 27 6 4.0593 -2.6246 -0.0332 28 1 -0.3633 -0.0004 1.0277 29 1 -0.3633 0.8901 -0.5136 30 1 -0.3633 -0.8899 -0.5142 31 1 1.6495 2.1288 0.0004 32 1 4.1109 2.1464 0.0031 33 1 5.3537 0.0165 -0.0061 34 1 2.6173 -6.7444 0.2308 35 1 2.5809 -4.1183 -4.3898 36 1 2.1910 -6.4912 -4.1695 37 1 3.8580 -6.7914 -3.5764 38 1 2.9503 -6.0410 -6.4098 39 1 4.0546 -7.3596 -5.9122 40 1 5.8623 -5.9095 -5.6356 41 1 4.9484 -4.8857 -6.7785 42 1 5.5616 -4.3476 -3.9945 43 1 4.6472 -3.3231 -5.1370 44 1 4.4009 -2.9397 0.9529 45 1 4.8416 -2.7669 -0.7787 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336227785.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:33:28 Heat of formation + Delta-G solvation = -46.292566 kcal Electronic energy + Delta-G solvation = -27745.065413 eV Core-core repulsion = 24113.449776 eV Total energy + Delta-G solvation = -3631.615638 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.79801 -38.77640 -37.21323 -36.18529 -34.44207 -32.98539 -31.63357 -30.52239 -29.00030 -28.00681 -26.90972 -26.39411 -25.06949 -23.33011 -21.67317 -20.34673 -19.92070 -19.83478 -19.55536 -17.35546 -16.44944 -16.20125 -15.56117 -15.36250 -15.01558 -14.82596 -14.61925 -14.16427 -13.60051 -13.54711 -13.12500 -13.07638 -12.78249 -12.65165 -12.48618 -12.27928 -11.97411 -11.75816 -11.70807 -11.45791 -11.32066 -11.16641 -11.04796 -10.90257 -10.66400 -10.60692 -10.57879 -10.41991 -10.40563 -10.28449 -9.93795 -9.66248 -8.98167 -8.48549 -8.24849 -7.49721 -7.36124 -6.55517 -4.42992 1.69712 1.81747 3.00092 3.11717 3.13177 3.70177 3.96066 3.98375 4.22149 4.64694 4.67255 5.04586 5.16452 5.24706 5.30906 5.32586 5.43972 5.51033 5.62374 5.71243 5.87072 5.92406 5.96588 6.00621 6.05236 6.17397 6.18826 6.22037 6.25349 6.31834 6.44226 6.46953 6.49324 6.51244 6.55556 6.66046 6.69754 6.78794 6.79689 6.90923 6.95687 7.02899 7.11471 7.22537 7.30071 7.78827 7.87756 8.47379 8.74667 9.41920 9.86170 10.44418 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.013058 B = 0.005553 C = 0.004701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2143.728511 B = 5040.819867 C = 5954.219667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.111 4.111 3 C -0.094 4.094 4 C -0.158 4.158 5 C -0.078 4.078 6 C -0.170 4.170 7 C 0.127 3.873 8 O -0.286 6.286 9 C 0.073 3.927 10 H 0.158 0.842 11 C 0.503 3.497 12 O -0.591 6.591 13 N -0.442 5.442 14 C -0.337 4.337 15 H 0.086 0.914 16 C 0.047 3.953 17 N -0.847 5.847 18 Si 0.893 3.107 19 H -0.269 1.269 20 H -0.281 1.281 21 H -0.264 1.264 22 C 0.135 3.865 23 C -0.115 4.115 24 C -0.125 4.125 25 C -0.116 4.116 26 C -0.130 4.130 27 C -0.090 4.090 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.070 0.930 31 H 0.123 0.877 32 H 0.120 0.880 33 H 0.119 0.881 34 H 0.274 0.726 35 H 0.079 0.921 36 H 0.055 0.945 37 H 0.086 0.914 38 H 0.056 0.944 39 H 0.057 0.943 40 H 0.058 0.942 41 H 0.052 0.948 42 H 0.073 0.927 43 H 0.051 0.949 44 H 0.085 0.915 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.063 6.144 0.086 6.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.112 4.112 3 C -0.113 4.113 4 C -0.177 4.177 5 C -0.096 4.096 6 C -0.171 4.171 7 C 0.081 3.919 8 O -0.198 6.198 9 C 0.014 3.986 10 H 0.174 0.826 11 C 0.292 3.708 12 O -0.475 6.475 13 N -0.163 5.163 14 C -0.465 4.465 15 H 0.104 0.896 16 C -0.160 4.160 17 N -0.482 5.482 18 Si 0.718 3.282 19 H -0.194 1.194 20 H -0.206 1.206 21 H -0.188 1.188 22 C 0.031 3.969 23 C -0.153 4.153 24 C -0.163 4.163 25 C -0.154 4.154 26 C -0.168 4.168 27 C -0.127 4.127 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.089 0.911 31 H 0.141 0.859 32 H 0.138 0.862 33 H 0.137 0.863 34 H 0.084 0.916 35 H 0.097 0.903 36 H 0.074 0.926 37 H 0.104 0.896 38 H 0.075 0.925 39 H 0.076 0.924 40 H 0.077 0.923 41 H 0.071 0.929 42 H 0.092 0.908 43 H 0.070 0.930 44 H 0.104 0.896 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 2.338 6.166 -0.112 6.596 hybrid contribution 0.774 -0.530 0.678 1.158 sum 3.112 5.636 0.566 6.463 Atomic orbital electron populations 1.20628 0.91115 1.02788 1.01633 1.19074 0.96158 0.89768 1.06186 1.20635 0.94144 0.96182 1.00291 1.20843 0.94048 0.97315 1.05458 1.20205 0.99385 0.90649 0.99403 1.21025 0.94089 0.95945 1.06016 1.19498 0.91758 0.86205 0.94429 1.86893 1.40218 1.13056 1.79637 1.23826 0.84158 0.95282 0.95307 0.82606 1.20449 0.81973 0.79477 0.88946 1.90541 1.41097 1.49620 1.66199 1.43217 1.31382 1.36282 1.05405 1.19234 0.88939 1.28890 1.09394 0.89603 1.25629 0.96603 0.93432 1.00319 1.70092 1.18385 1.32761 1.27003 0.86459 0.81679 0.78531 0.81527 1.19399 1.20602 1.18827 1.21871 0.96321 0.95267 0.83486 1.22676 1.00918 0.97090 0.94599 1.22318 0.97452 0.98557 0.97947 1.22025 0.98343 0.97023 0.98033 1.22396 0.99632 0.97524 0.97273 1.21683 0.98889 0.88936 1.03235 0.91918 0.92032 0.91084 0.85921 0.86152 0.86291 0.91583 0.90260 0.92606 0.89586 0.92526 0.92422 0.92324 0.92869 0.90837 0.92983 0.89630 0.87734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.66 9.98 36.01 0.36 -1.30 16 2 C -0.11 -2.02 5.90 -104.34 -0.62 -2.64 16 3 C -0.09 -1.45 9.66 -39.68 -0.38 -1.83 16 4 C -0.16 -2.35 10.07 -39.52 -0.40 -2.74 16 5 C -0.08 -1.30 10.03 -39.72 -0.40 -1.69 16 6 C -0.17 -3.36 6.26 -104.10 -0.65 -4.01 16 7 C 0.13 2.70 6.51 -38.95 -0.25 2.45 16 8 O -0.29 -6.78 10.31 -39.19 -0.40 -7.18 16 9 C 0.07 1.71 3.02 -26.99 -0.08 1.62 16 10 H 0.16 3.80 4.73 -51.93 -0.25 3.56 16 11 C 0.50 12.89 6.54 -10.98 -0.07 12.82 16 12 O -0.59 -16.71 15.82 -13.47 -0.21 -16.93 16 13 N -0.44 -10.53 2.42 -105.78 -0.26 -10.79 16 14 C -0.34 -7.74 5.60 -14.93 -0.08 -7.83 16 15 H 0.09 1.93 6.94 -52.49 -0.36 1.56 16 16 C 0.05 1.07 3.33 -17.47 -0.06 1.02 16 17 N -0.85 -20.87 11.65 55.50 0.65 -20.22 16 18 Si 0.89 17.75 29.61 -169.99 -5.03 12.72 16 19 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 20 H -0.28 -5.71 7.11 56.52 0.40 -5.30 16 21 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 22 C 0.13 2.92 3.26 -66.08 -0.22 2.70 16 23 C -0.11 -2.29 6.43 -24.55 -0.16 -2.45 16 24 C -0.12 -1.99 6.82 -25.07 -0.17 -2.17 16 25 C -0.12 -1.80 6.80 -25.61 -0.17 -1.97 16 26 C -0.13 -2.38 6.42 -25.61 -0.16 -2.55 16 27 C -0.09 -1.83 6.01 -26.52 -0.16 -1.99 16 28 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.06 0.81 8.08 -51.93 -0.42 0.39 16 30 H 0.07 1.27 8.01 -51.93 -0.42 0.85 16 31 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 32 H 0.12 1.39 8.06 -52.49 -0.42 0.96 16 33 H 0.12 1.66 8.06 -52.49 -0.42 1.24 16 34 H 0.27 6.41 8.32 -40.82 -0.34 6.07 16 35 H 0.08 1.86 6.99 -51.93 -0.36 1.50 16 36 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 37 H 0.09 1.88 7.15 -51.93 -0.37 1.51 16 38 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.07 1.39 6.55 -51.93 -0.34 1.05 16 43 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 44 H 0.09 1.61 8.14 -51.92 -0.42 1.18 16 45 H 0.10 2.12 6.91 -51.93 -0.36 1.76 16 LS Contribution 356.76 15.07 5.38 5.38 Total: -1.00 -28.23 356.76 -10.23 -38.46 By element: Atomic # 1 Polarization: 17.78 SS G_CDS: -6.66 Total: 11.11 kcal Atomic # 6 Polarization: -8.88 SS G_CDS: -3.68 Total: -12.56 kcal Atomic # 7 Polarization: -31.40 SS G_CDS: 0.39 Total: -31.01 kcal Atomic # 8 Polarization: -23.49 SS G_CDS: -0.62 Total: -24.11 kcal Atomic # 14 Polarization: 17.75 SS G_CDS: -5.03 Total: 12.72 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -28.23 -10.23 -38.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336227785.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.831 kcal (2) G-P(sol) polarization free energy of solvation -28.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds