Wall clock time and date at job start Tue Mar 31 2020 11:33:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37979 * 119.88099 * 2 1 4 4 C 1.38241 * 120.35533 * 180.02562 * 3 2 1 5 5 C 1.38389 * 119.76352 * 0.19870 * 4 3 2 6 6 C 1.37701 * 119.97893 * 359.97438 * 5 4 3 7 7 C 1.38919 * 120.78900 * 359.62094 * 6 5 4 8 8 O 1.36137 * 111.22620 * 180.64074 * 7 6 5 9 9 C 1.43775 * 109.23694 * 340.96420 * 8 7 6 10 10 H 1.08996 * 110.74585 * 146.26474 * 9 8 7 11 11 C 1.50702 * 110.74163 * 269.42428 * 9 8 7 12 12 O 1.21291 * 120.00436 * 4.61385 * 11 9 8 13 13 N 1.34777 * 119.99501 * 184.61594 * 11 9 8 14 14 C 1.37099 * 120.00352 * 356.03038 * 13 11 9 15 15 H 1.07999 * 119.99645 * 235.69174 * 14 13 11 16 16 C 1.38945 * 119.99992 * 55.69281 * 14 13 11 17 17 N 1.31411 * 120.00292 * 21.91913 * 16 14 13 18 18 Si 1.86799 * 120.00156 * 201.92464 * 16 14 13 19 19 H 1.48504 * 109.47441 * 89.99323 * 18 16 14 20 20 H 1.48496 * 109.47415 * 209.99667 * 18 16 14 21 21 H 1.48504 * 109.46836 * 330.00026 * 18 16 14 22 22 C 1.46503 * 119.99842 * 176.03049 * 13 11 9 23 23 C 1.55239 * 110.46921 * 234.80820 * 22 13 11 24 24 C 1.54889 * 102.59068 * 203.39361 * 23 22 13 25 25 C 1.54264 * 104.31105 * 37.93014 * 24 23 22 26 26 C 1.53884 * 106.59930 * 336.32614 * 25 24 23 27 27 C 1.51641 * 132.17017 * 179.03190 * 6 5 4 28 28 H 1.09000 * 109.47182 * 269.97847 * 1 2 3 29 29 H 1.09002 * 109.47152 * 29.98538 * 1 2 3 30 30 H 1.09005 * 109.46681 * 149.97958 * 1 2 3 31 31 H 1.07999 * 119.81690 * 0.02562 * 3 2 1 32 32 H 1.07995 * 120.11364 * 180.22255 * 4 3 2 33 33 H 1.07999 * 120.01130 * 179.97438 * 5 4 3 34 34 H 0.96996 * 120.00545 * 184.91068 * 17 16 14 35 35 H 1.08997 * 110.43625 * 357.45690 * 22 13 11 36 36 H 1.08999 * 110.89637 * 85.10233 * 23 22 13 37 37 H 1.09001 * 110.76724 * 321.62515 * 23 22 13 38 38 H 1.09000 * 110.48253 * 279.19048 * 24 23 22 39 39 H 1.08994 * 110.48701 * 156.67532 * 24 23 22 40 40 H 1.09000 * 110.03407 * 95.60531 * 25 24 23 41 41 H 1.08997 * 110.03239 * 216.99317 * 25 24 23 42 42 H 1.08994 * 110.03094 * 119.28766 * 26 25 24 43 43 H 1.09000 * 110.02717 * 240.71699 * 26 25 24 44 44 H 1.09010 * 110.93665 * 77.73818 * 27 6 5 45 45 H 1.08996 * 110.94228 * 314.05822 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1944 1.1964 0.0000 4 6 3.5768 1.2078 -0.0005 5 6 4.2737 0.0122 -0.0052 6 6 3.5897 -1.1829 -0.0088 7 6 2.2008 -1.2073 0.0001 8 8 1.7303 -2.4848 0.0087 9 6 2.7679 -3.3748 -0.4367 10 1 2.6995 -4.3345 0.0753 11 6 2.7046 -3.5632 -1.9305 12 8 1.9064 -2.9298 -2.5884 13 7 3.5350 -4.4356 -2.5354 14 6 4.4916 -5.0912 -1.8042 15 1 5.5305 -5.0253 -2.0919 16 6 4.1245 -5.8403 -0.6930 17 7 2.8928 -6.2831 -0.5768 18 14 5.3820 -6.2179 0.6357 19 1 5.3567 -5.1438 1.6609 20 1 5.0534 -7.5183 1.2731 21 1 6.7357 -6.2917 0.0296 22 6 3.4153 -4.6834 -3.9744 23 6 3.2384 -6.2006 -4.2511 24 6 3.7337 -6.3373 -5.7123 25 6 4.9307 -5.3684 -5.8014 26 6 4.7283 -4.3168 -4.6963 27 6 4.0593 -2.6246 -0.0332 28 1 -0.3633 -0.0004 1.0277 29 1 -0.3633 0.8901 -0.5136 30 1 -0.3633 -0.8899 -0.5142 31 1 1.6495 2.1288 0.0004 32 1 4.1109 2.1464 0.0031 33 1 5.3537 0.0165 -0.0061 34 1 2.6173 -6.7444 0.2308 35 1 2.5809 -4.1183 -4.3898 36 1 2.1910 -6.4912 -4.1695 37 1 3.8580 -6.7914 -3.5764 38 1 2.9503 -6.0410 -6.4098 39 1 4.0546 -7.3596 -5.9122 40 1 5.8623 -5.9095 -5.6356 41 1 4.9484 -4.8857 -6.7785 42 1 5.5616 -4.3476 -3.9945 43 1 4.6472 -3.3231 -5.1370 44 1 4.4009 -2.9397 0.9529 45 1 4.8416 -2.7669 -0.7787 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336227785.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:33:27 Heat of formation + Delta-G solvation = -59.495314 kcal Electronic energy + Delta-G solvation = -27745.637928 eV Core-core repulsion = 24113.449776 eV Total energy + Delta-G solvation = -3632.188152 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.38262 -40.48873 -38.69233 -37.85027 -36.26847 -34.38173 -33.45380 -31.95588 -30.53771 -29.50773 -28.49306 -27.67800 -26.90665 -24.96124 -23.04835 -21.75263 -21.64170 -21.42631 -21.12353 -19.08304 -18.01503 -17.86158 -17.29981 -16.96804 -16.50959 -16.33730 -16.15247 -15.77890 -15.26281 -15.05990 -14.54940 -14.48237 -14.33381 -14.18248 -13.96426 -13.80213 -13.46376 -13.41266 -13.25852 -13.11402 -12.89169 -12.75761 -12.38571 -12.33236 -12.28034 -12.21644 -12.04540 -12.01713 -11.88210 -11.65605 -11.42958 -11.20024 -10.83360 -10.29058 -9.58206 -9.29560 -8.93954 -8.37187 -6.30552 0.37851 0.46300 1.40350 1.46994 1.55716 1.89746 2.24930 2.39116 2.83273 2.87482 2.92253 3.58396 3.70106 3.83870 3.87893 3.97766 4.06626 4.11209 4.23791 4.37585 4.42404 4.51446 4.59722 4.65302 4.67420 4.73567 4.75531 4.75796 4.78329 4.84138 4.89257 4.90341 5.01381 5.02885 5.13472 5.21126 5.30320 5.37759 5.46475 5.48362 5.49560 5.51986 5.57941 5.61591 5.79876 6.04391 6.30720 6.59770 6.91755 7.50774 7.98328 8.64311 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.013058 B = 0.005553 C = 0.004701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2143.728511 B = 5040.819867 C = 5954.219667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.129 4.129 3 C -0.090 4.090 4 C -0.143 4.143 5 C -0.083 4.083 6 C -0.190 4.190 7 C 0.077 3.923 8 O -0.316 6.316 9 C 0.072 3.928 10 H 0.142 0.858 11 C 0.485 3.515 12 O -0.634 6.634 13 N -0.441 5.441 14 C -0.342 4.342 15 H 0.095 0.905 16 C 0.019 3.981 17 N -0.882 5.882 18 Si 0.949 3.051 19 H -0.259 1.259 20 H -0.287 1.287 21 H -0.251 1.251 22 C 0.119 3.881 23 C -0.109 4.109 24 C -0.114 4.114 25 C -0.107 4.107 26 C -0.122 4.122 27 C -0.079 4.079 28 H 0.078 0.922 29 H 0.091 0.909 30 H 0.035 0.965 31 H 0.164 0.836 32 H 0.166 0.834 33 H 0.147 0.853 34 H 0.274 0.726 35 H 0.051 0.949 36 H 0.032 0.968 37 H 0.066 0.934 38 H 0.067 0.933 39 H 0.080 0.920 40 H 0.074 0.926 41 H 0.079 0.921 42 H 0.067 0.933 43 H 0.054 0.946 44 H 0.097 0.903 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.557 8.095 -0.073 9.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.129 4.129 3 C -0.108 4.108 4 C -0.161 4.161 5 C -0.101 4.101 6 C -0.191 4.191 7 C 0.032 3.968 8 O -0.229 6.229 9 C 0.013 3.987 10 H 0.158 0.842 11 C 0.275 3.725 12 O -0.522 6.522 13 N -0.160 5.160 14 C -0.470 4.470 15 H 0.113 0.887 16 C -0.185 4.185 17 N -0.518 5.518 18 Si 0.772 3.228 19 H -0.184 1.184 20 H -0.212 1.212 21 H -0.174 1.174 22 C 0.016 3.984 23 C -0.148 4.148 24 C -0.152 4.152 25 C -0.145 4.145 26 C -0.160 4.160 27 C -0.116 4.116 28 H 0.097 0.903 29 H 0.110 0.890 30 H 0.054 0.946 31 H 0.181 0.819 32 H 0.183 0.817 33 H 0.165 0.835 34 H 0.084 0.916 35 H 0.069 0.931 36 H 0.051 0.949 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.098 0.902 40 H 0.093 0.907 41 H 0.098 0.902 42 H 0.086 0.914 43 H 0.073 0.927 44 H 0.115 0.885 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 4.867 8.110 -0.285 9.463 hybrid contribution -0.066 -1.058 0.711 1.276 sum 4.800 7.053 0.426 8.542 Atomic orbital electron populations 1.20639 0.90143 1.02474 1.02599 1.19593 0.97407 0.89885 1.06037 1.21152 0.94859 0.96404 0.98342 1.21412 0.94028 0.98343 1.02285 1.20643 1.00962 0.90029 0.98477 1.21178 0.93776 0.96488 1.07684 1.19999 0.93136 0.85929 0.97745 1.86810 1.40961 1.14749 1.80420 1.23663 0.86097 0.95349 0.93548 0.84162 1.20994 0.81998 0.79492 0.90026 1.90478 1.42961 1.51431 1.67294 1.43427 1.30845 1.35323 1.06371 1.19448 0.88993 1.28733 1.09785 0.88739 1.26283 0.97841 0.92797 1.01597 1.70181 1.20486 1.33633 1.27542 0.85590 0.79964 0.78097 0.79171 1.18369 1.21247 1.17410 1.22108 0.97445 0.96102 0.82793 1.22559 0.99326 0.95382 0.97496 1.22286 0.98001 1.00266 0.94678 1.22008 0.98543 0.95978 0.97995 1.22323 0.97013 0.98878 0.97827 1.21548 0.97033 0.89643 1.03393 0.90296 0.89038 0.94573 0.81877 0.81670 0.83532 0.91616 0.93096 0.94868 0.91481 0.91443 0.90154 0.90740 0.90214 0.91439 0.92724 0.88518 0.88150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.22 9.98 71.24 0.71 -2.51 16 2 C -0.13 -4.63 5.90 -19.68 -0.12 -4.74 16 3 C -0.09 -2.47 9.66 22.21 0.21 -2.25 16 4 C -0.14 -3.65 10.07 22.31 0.22 -3.42 16 5 C -0.08 -2.56 10.03 22.18 0.22 -2.33 16 6 C -0.19 -7.55 6.26 -19.53 -0.12 -7.67 16 7 C 0.08 3.37 6.51 22.68 0.15 3.52 16 8 O -0.32 -16.05 10.31 -76.92 -0.79 -16.85 16 9 C 0.07 3.59 3.02 30.43 0.09 3.68 16 10 H 0.14 7.31 4.73 -2.39 -0.01 7.30 16 11 C 0.49 26.46 6.54 87.66 0.57 27.04 16 12 O -0.63 -38.52 15.82 15.12 0.24 -38.28 16 13 N -0.44 -21.98 2.42 -606.95 -1.47 -23.45 16 14 C -0.34 -16.11 5.60 84.04 0.47 -15.64 16 15 H 0.10 4.24 6.94 -2.91 -0.02 4.22 16 16 C 0.02 0.88 3.33 84.93 0.28 1.17 16 17 N -0.88 -45.45 11.65 21.66 0.25 -45.20 16 18 Si 0.95 36.34 29.61 68.60 2.03 38.37 16 19 H -0.26 -9.48 7.11 99.48 0.71 -8.77 16 20 H -0.29 -11.23 7.11 99.48 0.71 -10.52 16 21 H -0.25 -9.03 7.11 99.48 0.71 -8.32 16 22 C 0.12 5.38 3.26 46.19 0.15 5.53 16 23 C -0.11 -4.50 6.43 32.01 0.21 -4.30 16 24 C -0.11 -3.48 6.82 31.67 0.22 -3.27 16 25 C -0.11 -3.05 6.80 31.32 0.21 -2.84 16 26 C -0.12 -4.43 6.42 31.32 0.20 -4.23 16 27 C -0.08 -3.29 6.01 30.73 0.18 -3.10 16 28 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 29 H 0.09 2.26 8.08 -2.39 -0.02 2.24 16 30 H 0.04 1.36 8.01 -2.38 -0.02 1.34 16 31 H 0.16 3.10 8.06 -2.91 -0.02 3.08 16 32 H 0.17 2.77 8.06 -2.91 -0.02 2.74 16 33 H 0.15 3.59 8.06 -2.91 -0.02 3.56 16 34 H 0.27 13.44 8.32 -92.71 -0.77 12.67 16 35 H 0.05 2.55 6.99 -2.39 -0.02 2.54 16 36 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.07 3.01 7.15 -2.39 -0.02 2.99 16 38 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 39 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 40 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 41 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 42 H 0.07 2.52 6.55 -2.39 -0.02 2.50 16 43 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 44 H 0.10 3.67 8.14 -2.38 -0.02 3.65 16 45 H 0.10 4.15 6.91 -2.39 -0.02 4.13 16 Total: -1.00 -67.28 356.76 5.12 -62.16 By element: Atomic # 1 Polarization: 37.65 SS G_CDS: 0.99 Total: 38.64 kcal Atomic # 6 Polarization: -19.26 SS G_CDS: 3.87 Total: -15.39 kcal Atomic # 7 Polarization: -67.44 SS G_CDS: -1.22 Total: -68.66 kcal Atomic # 8 Polarization: -54.58 SS G_CDS: -0.55 Total: -55.13 kcal Atomic # 14 Polarization: 36.34 SS G_CDS: 2.03 Total: 38.37 kcal Total: -67.28 5.12 -62.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336227785.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.669 kcal (2) G-P(sol) polarization free energy of solvation -67.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds