Wall clock time and date at job start Tue Mar 31 2020 11:31:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37841 * 120.07215 * 2 1 4 4 C 1.38788 * 120.74466 * 179.97438 * 3 2 1 5 5 C 1.36665 * 120.44319 * 0.02562 * 4 3 2 6 6 C 1.39655 * 119.70852 * 359.97438 * 5 4 3 7 7 C 1.46255 * 134.19431 * 180.02562 * 6 5 4 8 8 C 1.35808 * 106.08133 * 179.28016 * 7 6 5 9 9 C 1.46979 * 125.13122 * 180.02562 * 8 7 6 10 10 O 1.21661 * 119.99512 * 0.62039 * 9 8 7 11 11 N 1.34778 * 120.00402 * 180.61805 * 9 8 7 12 12 C 1.46502 * 119.99893 * 180.02562 * 11 9 8 13 13 C 1.52998 * 109.46764 * 180.02562 * 12 11 9 14 14 C 1.53006 * 109.46798 * 299.99338 * 13 12 11 15 15 C 1.52997 * 109.47585 * 59.99827 * 13 12 11 16 16 C 1.53002 * 109.46887 * 179.97438 * 13 12 11 17 17 C 1.50705 * 109.47296 * 179.97438 * 16 13 12 18 18 H 1.08001 * 119.99374 * 359.97438 * 17 16 13 19 19 C 1.37869 * 120.00043 * 179.97438 * 17 16 13 20 20 N 1.31519 * 119.99999 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 120.00299 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.46945 * 89.99947 * 21 19 17 23 23 H 1.48497 * 109.47325 * 210.00102 * 21 19 17 24 24 H 1.48502 * 109.46999 * 330.00297 * 21 19 17 25 25 O 1.34945 * 109.74466 * 0.61823 * 8 7 6 26 26 C 1.34722 * 110.86376 * 359.43857 * 25 8 7 27 27 H 1.09002 * 109.47152 * 89.99900 * 1 2 3 28 28 H 1.09001 * 109.46980 * 330.00000 * 1 2 3 29 29 H 1.09004 * 109.47113 * 209.99981 * 1 2 3 30 30 H 1.08002 * 119.62593 * 359.97438 * 3 2 1 31 31 H 1.08001 * 119.78122 * 179.97438 * 4 3 2 32 32 H 1.07999 * 120.14729 * 179.97438 * 5 4 3 33 33 H 1.08007 * 126.95657 * 359.94804 * 7 6 5 34 34 H 0.96992 * 119.99776 * 0.02562 * 11 9 8 35 35 H 1.09002 * 109.46820 * 299.99927 * 12 11 9 36 36 H 1.09001 * 109.47578 * 59.99760 * 12 11 9 37 37 H 1.08995 * 109.46752 * 60.00734 * 14 13 12 38 38 H 1.09003 * 109.46916 * 180.02562 * 14 13 12 39 39 H 1.09001 * 109.47108 * 300.00332 * 14 13 12 40 40 H 1.08998 * 109.47317 * 60.00162 * 15 13 12 41 41 H 1.09000 * 109.46717 * 180.02562 * 15 13 12 42 42 H 1.09004 * 109.46822 * 299.99672 * 15 13 12 43 43 H 1.08998 * 109.47241 * 299.99364 * 16 13 12 44 44 H 1.09001 * 109.47409 * 59.99429 * 16 13 12 45 45 H 0.96993 * 120.00092 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1929 0.0000 4 6 3.5855 1.2092 0.0005 5 6 4.2918 0.0391 0.0005 6 6 3.6110 -1.1802 0.0006 7 6 4.0295 -2.5816 0.0010 8 6 2.8869 -3.3155 0.0171 9 6 2.8249 -4.7840 0.0240 10 8 3.8520 -5.4361 0.0265 11 7 1.6303 -5.4081 0.0277 12 6 1.5686 -6.8718 0.0351 13 6 0.1059 -7.3205 0.0373 14 6 -0.5931 -6.7743 1.2840 15 6 -0.5932 -6.7869 -1.2146 16 6 0.0415 -8.8491 0.0444 17 6 -1.3993 -9.2912 0.0473 18 1 -2.1898 -8.5554 0.0447 19 6 -1.7080 -10.6348 0.0531 20 7 -2.9654 -11.0206 0.0551 21 14 -0.3407 -11.9075 0.0568 22 1 0.0232 -12.2390 1.4578 23 1 -0.8051 -13.1351 -0.6377 24 1 0.8470 -11.3600 -0.6468 25 8 1.8169 -2.4933 0.0128 26 6 2.2035 -1.2027 0.0062 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 0.8900 0.5138 29 1 -0.3633 -0.8900 0.5138 30 1 1.6528 2.1253 -0.0004 31 1 4.1109 2.1528 0.0001 32 1 5.3716 0.0574 0.0005 33 1 5.0423 -2.9568 0.0007 34 1 0.8115 -4.8881 0.0254 35 1 2.0664 -7.2609 -0.8532 36 1 2.0671 -7.2520 0.9268 37 1 -0.5472 -5.6853 1.2784 38 1 -1.6351 -7.0943 1.2858 39 1 -0.0950 -7.1545 2.1758 40 1 -0.0953 -7.1760 -2.1026 41 1 -1.6354 -7.1062 -1.2126 42 1 -0.5473 -5.6978 -1.2200 43 1 0.5393 -9.2379 -0.8438 44 1 0.5397 -9.2297 0.9361 45 1 -3.1826 -11.9659 0.0596 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345902441.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:38 Heat of formation + Delta-G solvation = -26.884494 kcal Electronic energy + Delta-G solvation = -25581.414151 eV Core-core repulsion = 21950.640111 eV Total energy + Delta-G solvation = -3630.774041 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 1.95 seconds Orbital eigenvalues (eV) -42.77571 -39.71336 -38.34699 -37.30233 -34.01771 -33.75413 -32.15937 -31.69048 -30.10787 -27.88409 -27.27736 -26.58700 -26.58603 -24.01361 -22.96972 -22.24746 -21.01533 -20.58543 -18.85368 -17.80824 -17.62191 -16.86837 -16.66924 -16.11990 -15.75199 -15.21728 -15.10668 -14.32454 -14.10235 -13.98807 -13.88588 -13.60630 -13.52596 -13.36770 -13.23799 -12.77007 -12.71354 -12.40943 -12.29348 -12.26531 -12.00773 -11.32544 -11.28462 -11.16058 -11.03089 -10.64351 -10.53771 -10.44630 -10.33249 -10.00933 -9.77076 -9.55049 -9.08270 -9.02311 -8.90174 -8.54979 -8.44414 -6.05554 -4.03080 0.29000 0.99984 1.58571 2.21985 3.05529 3.13021 3.30570 3.32297 3.38761 3.42306 4.17671 4.25152 4.44329 4.49140 4.64324 4.81502 4.88242 5.02721 5.17339 5.21875 5.26580 5.30463 5.31344 5.43633 5.46773 5.59236 5.66942 5.85244 5.99262 6.00627 6.04826 6.06023 6.07633 6.09582 6.22637 6.27521 6.33994 6.56751 6.59116 6.73309 6.85585 6.98970 7.02235 7.16649 7.33288 7.46039 7.76575 8.02735 8.51201 8.98347 9.56907 11.07144 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.026619 B = 0.002610 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.636767 B =10727.388158 C =11577.344194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.073 4.073 3 C -0.091 4.091 4 C -0.134 4.134 5 C -0.068 4.068 6 C -0.139 4.139 7 C -0.120 4.120 8 C -0.017 4.017 9 C 0.592 3.408 10 O -0.520 6.520 11 N -0.704 5.704 12 C 0.123 3.877 13 C -0.063 4.063 14 C -0.131 4.131 15 C -0.130 4.130 16 C -0.002 4.002 17 C -0.511 4.511 18 H 0.078 0.922 19 C 0.066 3.934 20 N -0.903 5.903 21 Si 0.875 3.125 22 H -0.278 1.278 23 H -0.289 1.289 24 H -0.265 1.265 25 O -0.181 6.181 26 C 0.069 3.931 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.136 0.864 31 H 0.131 0.869 32 H 0.130 0.870 33 H 0.170 0.830 34 H 0.407 0.593 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.031 0.969 38 H 0.074 0.926 39 H 0.048 0.952 40 H 0.048 0.952 41 H 0.074 0.926 42 H 0.031 0.969 43 H 0.019 0.981 44 H 0.015 0.985 45 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.057 25.483 -0.161 27.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.074 4.074 3 C -0.109 4.109 4 C -0.152 4.152 5 C -0.086 4.086 6 C -0.140 4.140 7 C -0.141 4.141 8 C -0.067 4.067 9 C 0.376 3.624 10 O -0.398 6.398 11 N -0.354 5.354 12 C 0.000 4.000 13 C -0.063 4.063 14 C -0.188 4.188 15 C -0.188 4.188 16 C -0.040 4.040 17 C -0.549 4.549 18 H 0.096 0.904 19 C -0.135 4.135 20 N -0.542 5.542 21 Si 0.702 3.298 22 H -0.204 1.204 23 H -0.215 1.215 24 H -0.190 1.190 25 O -0.083 6.083 26 C 0.020 3.980 27 H 0.093 0.907 28 H 0.091 0.909 29 H 0.090 0.910 30 H 0.154 0.846 31 H 0.149 0.851 32 H 0.148 0.852 33 H 0.188 0.812 34 H 0.243 0.757 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.050 0.950 38 H 0.093 0.907 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.093 0.907 42 H 0.050 0.950 43 H 0.037 0.963 44 H 0.033 0.967 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 11.359 24.710 -0.160 27.196 hybrid contribution 0.438 -0.559 0.020 0.710 sum 11.796 24.151 -0.140 26.878 Atomic orbital electron populations 1.20782 0.90010 1.03456 1.02972 1.18880 0.96475 0.88265 1.03780 1.20901 0.94220 0.96447 0.99339 1.20773 0.94029 0.98139 1.02308 1.20346 1.00081 0.89988 0.98178 1.19926 0.93034 0.93986 1.07030 1.22724 0.99318 0.90008 1.02050 1.22172 0.85391 0.91143 1.07984 1.16700 0.84769 0.83004 0.77936 1.90886 1.33995 1.63911 1.51006 1.46133 1.07656 1.09214 1.72423 1.21804 0.98936 0.76947 1.02286 1.20707 0.90750 0.98948 0.95934 1.21797 1.02642 0.97570 0.96771 1.21791 1.02631 0.97605 0.96725 1.19599 0.98576 0.89189 0.96615 1.21064 0.90698 0.92642 1.50489 0.90368 1.24999 0.95160 0.98571 0.94721 1.69899 1.17062 1.16021 1.51266 0.86856 0.83091 0.81287 0.78518 1.20370 1.21500 1.18974 1.84025 1.33918 1.14290 1.76047 1.19559 0.92795 0.83389 1.02221 0.90691 0.90915 0.91012 0.84629 0.85120 0.85209 0.81241 0.75690 0.91200 0.91199 0.94978 0.90705 0.93292 0.93283 0.90706 0.94980 0.96264 0.96717 0.92776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.86 10.02 36.01 0.36 -0.49 16 2 C -0.07 -0.68 5.89 -104.49 -0.62 -1.30 16 3 C -0.09 -0.67 9.67 -39.52 -0.38 -1.05 16 4 C -0.13 -0.95 9.98 -39.95 -0.40 -1.35 16 5 C -0.07 -0.58 10.06 -39.62 -0.40 -0.98 16 6 C -0.14 -1.55 6.38 -105.19 -0.67 -2.22 16 7 C -0.12 -1.45 10.80 -37.23 -0.40 -1.85 16 8 C -0.02 -0.23 7.07 -36.91 -0.26 -0.49 16 9 C 0.59 9.00 7.80 -12.72 -0.10 8.90 16 10 O -0.52 -9.28 16.83 5.22 0.09 -9.19 16 11 N -0.70 -10.24 4.95 -61.52 -0.30 -10.55 16 12 C 0.12 2.02 4.56 -4.04 -0.02 2.00 16 13 C -0.06 -1.14 0.54 -154.51 -0.08 -1.22 16 14 C -0.13 -2.25 8.05 37.16 0.30 -1.95 16 15 C -0.13 -2.25 8.05 37.16 0.30 -1.95 16 16 C 0.00 -0.04 3.11 -27.88 -0.09 -0.13 16 17 C -0.51 -13.54 8.20 -34.44 -0.28 -13.82 16 18 H 0.08 2.19 5.92 -52.49 -0.31 1.88 16 19 C 0.07 1.87 5.47 -17.82 -0.10 1.77 16 20 N -0.90 -27.08 13.96 55.43 0.77 -26.30 16 21 Si 0.87 21.35 27.47 -169.99 -4.67 16.68 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 24 H -0.27 -6.24 6.54 56.52 0.37 -5.87 16 25 O -0.18 -2.33 10.28 2.76 0.03 -2.30 16 26 C 0.07 0.80 7.07 -38.35 -0.27 0.53 16 27 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.07 0.40 8.09 -51.93 -0.42 -0.02 16 29 H 0.07 0.59 8.09 -51.93 -0.42 0.17 16 30 H 0.14 0.62 8.06 -52.49 -0.42 0.20 16 31 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 32 H 0.13 0.82 8.06 -52.49 -0.42 0.39 16 33 H 0.17 1.78 8.06 -52.48 -0.42 1.35 16 34 H 0.41 5.35 5.88 -40.82 -0.24 5.11 16 35 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.03 0.46 6.86 -51.93 -0.36 0.10 16 38 H 0.07 1.45 6.62 -51.93 -0.34 1.10 16 39 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.07 1.45 6.62 -51.93 -0.34 1.10 16 42 H 0.03 0.46 6.86 -51.93 -0.36 0.10 16 43 H 0.02 0.44 7.20 -51.93 -0.37 0.07 16 44 H 0.01 0.33 7.57 -51.93 -0.39 -0.06 16 45 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 367.90 15.07 5.54 5.54 Total: -1.00 -31.21 367.90 -8.18 -39.39 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -6.53 Total: 2.33 kcal Atomic # 6 Polarization: -12.49 SS G_CDS: -3.11 Total: -15.60 kcal Atomic # 7 Polarization: -37.32 SS G_CDS: 0.47 Total: -36.85 kcal Atomic # 8 Polarization: -11.61 SS G_CDS: 0.12 Total: -11.49 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.67 Total: 16.68 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.21 -8.18 -39.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345902441.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.505 kcal (2) G-P(sol) polarization free energy of solvation -31.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.95 seconds