Wall clock time and date at job start Tue Mar 31 2020 11:31:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37841 * 120.07215 * 2 1 4 4 C 1.38788 * 120.74466 * 179.97438 * 3 2 1 5 5 C 1.36665 * 120.44319 * 0.02562 * 4 3 2 6 6 C 1.39655 * 119.70852 * 359.97438 * 5 4 3 7 7 C 1.46255 * 134.19431 * 180.02562 * 6 5 4 8 8 C 1.35808 * 106.08133 * 179.28016 * 7 6 5 9 9 C 1.46979 * 125.13122 * 180.02562 * 8 7 6 10 10 O 1.21661 * 119.99512 * 0.62039 * 9 8 7 11 11 N 1.34778 * 120.00402 * 180.61805 * 9 8 7 12 12 C 1.46502 * 119.99893 * 180.02562 * 11 9 8 13 13 C 1.52998 * 109.46764 * 180.02562 * 12 11 9 14 14 C 1.53006 * 109.46798 * 299.99338 * 13 12 11 15 15 C 1.52997 * 109.47585 * 59.99827 * 13 12 11 16 16 C 1.53002 * 109.46887 * 179.97438 * 13 12 11 17 17 C 1.50705 * 109.47296 * 179.97438 * 16 13 12 18 18 H 1.08001 * 119.99374 * 359.97438 * 17 16 13 19 19 C 1.37869 * 120.00043 * 179.97438 * 17 16 13 20 20 N 1.31519 * 119.99999 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 120.00299 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.46945 * 89.99947 * 21 19 17 23 23 H 1.48497 * 109.47325 * 210.00102 * 21 19 17 24 24 H 1.48502 * 109.46999 * 330.00297 * 21 19 17 25 25 O 1.34945 * 109.74466 * 0.61823 * 8 7 6 26 26 C 1.34722 * 110.86376 * 359.43857 * 25 8 7 27 27 H 1.09002 * 109.47152 * 89.99900 * 1 2 3 28 28 H 1.09001 * 109.46980 * 330.00000 * 1 2 3 29 29 H 1.09004 * 109.47113 * 209.99981 * 1 2 3 30 30 H 1.08002 * 119.62593 * 359.97438 * 3 2 1 31 31 H 1.08001 * 119.78122 * 179.97438 * 4 3 2 32 32 H 1.07999 * 120.14729 * 179.97438 * 5 4 3 33 33 H 1.08007 * 126.95657 * 359.94804 * 7 6 5 34 34 H 0.96992 * 119.99776 * 0.02562 * 11 9 8 35 35 H 1.09002 * 109.46820 * 299.99927 * 12 11 9 36 36 H 1.09001 * 109.47578 * 59.99760 * 12 11 9 37 37 H 1.08995 * 109.46752 * 60.00734 * 14 13 12 38 38 H 1.09003 * 109.46916 * 180.02562 * 14 13 12 39 39 H 1.09001 * 109.47108 * 300.00332 * 14 13 12 40 40 H 1.08998 * 109.47317 * 60.00162 * 15 13 12 41 41 H 1.09000 * 109.46717 * 180.02562 * 15 13 12 42 42 H 1.09004 * 109.46822 * 299.99672 * 15 13 12 43 43 H 1.08998 * 109.47241 * 299.99364 * 16 13 12 44 44 H 1.09001 * 109.47409 * 59.99429 * 16 13 12 45 45 H 0.96993 * 120.00092 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1929 0.0000 4 6 3.5855 1.2092 0.0005 5 6 4.2918 0.0391 0.0005 6 6 3.6110 -1.1802 0.0006 7 6 4.0295 -2.5816 0.0010 8 6 2.8869 -3.3155 0.0171 9 6 2.8249 -4.7840 0.0240 10 8 3.8520 -5.4361 0.0265 11 7 1.6303 -5.4081 0.0277 12 6 1.5686 -6.8718 0.0351 13 6 0.1059 -7.3205 0.0373 14 6 -0.5931 -6.7743 1.2840 15 6 -0.5932 -6.7869 -1.2146 16 6 0.0415 -8.8491 0.0444 17 6 -1.3993 -9.2912 0.0473 18 1 -2.1898 -8.5554 0.0447 19 6 -1.7080 -10.6348 0.0531 20 7 -2.9654 -11.0206 0.0551 21 14 -0.3407 -11.9075 0.0568 22 1 0.0232 -12.2390 1.4578 23 1 -0.8051 -13.1351 -0.6377 24 1 0.8470 -11.3600 -0.6468 25 8 1.8169 -2.4933 0.0128 26 6 2.2035 -1.2027 0.0062 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 0.8900 0.5138 29 1 -0.3633 -0.8900 0.5138 30 1 1.6528 2.1253 -0.0004 31 1 4.1109 2.1528 0.0001 32 1 5.3716 0.0574 0.0005 33 1 5.0423 -2.9568 0.0007 34 1 0.8115 -4.8881 0.0254 35 1 2.0664 -7.2609 -0.8532 36 1 2.0671 -7.2520 0.9268 37 1 -0.5472 -5.6853 1.2784 38 1 -1.6351 -7.0943 1.2858 39 1 -0.0950 -7.1545 2.1758 40 1 -0.0953 -7.1760 -2.1026 41 1 -1.6354 -7.1062 -1.2126 42 1 -0.5473 -5.6978 -1.2200 43 1 0.5393 -9.2379 -0.8438 44 1 0.5397 -9.2297 0.9361 45 1 -3.1826 -11.9659 0.0596 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345902441.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:35 Heat of formation + Delta-G solvation = -44.688093 kcal Electronic energy + Delta-G solvation = -25582.186173 eV Core-core repulsion = 21950.640111 eV Total energy + Delta-G solvation = -3631.546063 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 5.75 seconds Orbital eigenvalues (eV) -43.60320 -40.92605 -39.07050 -38.73805 -35.36579 -34.64320 -34.06784 -32.41442 -31.01040 -29.71899 -28.03439 -27.97474 -27.75906 -25.28541 -23.84703 -23.68343 -21.78513 -21.68446 -20.12985 -18.99956 -18.85317 -18.51086 -17.58813 -17.15932 -16.65702 -16.32931 -16.25794 -15.95992 -15.35556 -15.21920 -15.06769 -14.77549 -14.33998 -14.24116 -14.23321 -14.12816 -14.07090 -13.91685 -13.26359 -12.96258 -12.90303 -12.86263 -12.66327 -12.57444 -12.32551 -12.19768 -11.94859 -11.82244 -11.65782 -11.54668 -11.18525 -11.14225 -10.93949 -10.70504 -10.29219 -9.66362 -9.18037 -8.22267 -6.22686 -0.52656 0.32342 0.74383 1.33007 1.36621 1.39301 1.49232 1.96343 2.02739 2.39331 2.67162 3.13183 3.31740 3.52063 3.82177 3.87001 3.95745 4.00839 4.02393 4.11224 4.30353 4.38940 4.49222 4.55867 4.59402 4.65623 4.71147 4.77609 4.85547 4.89866 4.95542 4.99333 5.05990 5.18196 5.24481 5.27519 5.30020 5.36802 5.38887 5.40323 5.46148 5.52000 5.55331 5.65005 5.74842 5.99040 6.32305 6.37860 6.84002 6.86638 7.39998 8.93365 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.026619 B = 0.002610 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.636767 B =10727.388158 C =11577.344194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.092 4.092 3 C -0.080 4.080 4 C -0.129 4.129 5 C -0.073 4.073 6 C -0.161 4.161 7 C -0.110 4.110 8 C -0.044 4.044 9 C 0.596 3.404 10 O -0.552 6.552 11 N -0.697 5.697 12 C 0.134 3.866 13 C -0.058 4.058 14 C -0.126 4.126 15 C -0.125 4.125 16 C -0.003 4.003 17 C -0.502 4.502 18 H 0.051 0.949 19 C 0.005 3.995 20 N -0.952 5.952 21 Si 0.935 3.065 22 H -0.272 1.272 23 H -0.290 1.290 24 H -0.249 1.249 25 O -0.192 6.192 26 C 0.045 3.955 27 H 0.078 0.922 28 H 0.094 0.906 29 H 0.057 0.943 30 H 0.169 0.831 31 H 0.166 0.834 32 H 0.151 0.849 33 H 0.179 0.821 34 H 0.414 0.586 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.061 0.939 38 H 0.047 0.953 39 H 0.048 0.952 40 H 0.048 0.952 41 H 0.047 0.953 42 H 0.061 0.939 43 H 0.018 0.982 44 H 0.017 0.983 45 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.031 28.640 -0.162 31.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.092 4.092 3 C -0.098 4.098 4 C -0.147 4.147 5 C -0.091 4.091 6 C -0.162 4.162 7 C -0.131 4.131 8 C -0.094 4.094 9 C 0.383 3.617 10 O -0.432 6.432 11 N -0.348 5.348 12 C 0.011 3.989 13 C -0.058 4.058 14 C -0.183 4.183 15 C -0.183 4.183 16 C -0.041 4.041 17 C -0.540 4.540 18 H 0.069 0.931 19 C -0.192 4.192 20 N -0.593 5.593 21 Si 0.760 3.240 22 H -0.197 1.197 23 H -0.216 1.216 24 H -0.173 1.173 25 O -0.094 6.094 26 C -0.003 4.003 27 H 0.097 0.903 28 H 0.113 0.887 29 H 0.076 0.924 30 H 0.187 0.813 31 H 0.183 0.817 32 H 0.169 0.831 33 H 0.197 0.803 34 H 0.252 0.748 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.080 0.920 38 H 0.066 0.934 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.067 0.933 42 H 0.080 0.920 43 H 0.037 0.963 44 H 0.035 0.965 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 13.333 27.896 -0.161 30.919 hybrid contribution -0.195 -1.286 0.020 1.301 sum 13.138 26.610 -0.141 29.677 Atomic orbital electron populations 1.20808 0.89046 1.03882 1.03358 1.19274 0.97505 0.88094 1.04369 1.21399 0.94698 0.96899 0.96764 1.21240 0.94132 0.98989 1.00294 1.20722 1.01398 0.89463 0.97528 1.20155 0.93178 0.94360 1.08536 1.22994 0.99363 0.90756 0.99951 1.21776 0.86221 0.90357 1.11027 1.16819 0.84191 0.83763 0.76956 1.90858 1.34869 1.64952 1.52555 1.45957 1.08060 1.08347 1.72425 1.21505 0.97146 0.78129 1.02110 1.20562 0.92300 0.96212 0.96747 1.21722 1.00706 0.99511 0.96344 1.21717 1.00700 0.99552 0.96292 1.19569 0.95651 0.92398 0.96484 1.21354 0.92302 0.92017 1.48336 0.93077 1.25846 0.97270 1.00995 0.95051 1.70043 1.19266 1.16388 1.53649 0.85880 0.80634 0.78606 0.78863 1.19703 1.21577 1.17310 1.83963 1.33756 1.14962 1.76723 1.20069 0.93659 0.83414 1.03142 0.90299 0.88677 0.92418 0.81325 0.81694 0.83107 0.80334 0.74826 0.91495 0.91419 0.91971 0.93352 0.93279 0.93311 0.93344 0.91973 0.96327 0.96481 0.92869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.48 10.02 71.24 0.71 -0.77 16 2 C -0.09 -1.51 5.89 -19.78 -0.12 -1.63 16 3 C -0.08 -0.87 9.67 22.31 0.22 -0.65 16 4 C -0.13 -1.30 9.98 22.03 0.22 -1.08 16 5 C -0.07 -1.04 10.06 22.24 0.22 -0.82 16 6 C -0.16 -3.39 6.38 -20.23 -0.13 -3.52 16 7 C -0.11 -2.58 10.80 23.79 0.26 -2.33 16 8 C -0.04 -1.18 7.07 24.00 0.17 -1.01 16 9 C 0.60 18.00 7.80 86.53 0.67 18.67 16 10 O -0.55 -19.66 16.83 -4.23 -0.07 -19.74 16 11 N -0.70 -19.74 4.95 -466.79 -2.31 -22.05 16 12 C 0.13 4.30 4.56 86.38 0.39 4.70 16 13 C -0.06 -2.07 0.54 -52.18 -0.03 -2.09 16 14 C -0.13 -4.29 8.05 71.98 0.58 -3.71 16 15 C -0.13 -4.29 8.05 71.98 0.58 -3.71 16 16 C 0.00 -0.14 3.11 29.85 0.09 -0.05 16 17 C -0.50 -27.21 8.20 25.60 0.21 -27.00 16 18 H 0.05 3.00 5.92 -2.91 -0.02 2.98 16 19 C 0.00 0.26 5.47 84.65 0.46 0.72 16 20 N -0.95 -58.80 13.96 21.44 0.30 -58.50 16 21 Si 0.94 44.24 27.47 68.60 1.88 46.13 16 22 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 23 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 24 H -0.25 -11.06 6.54 99.48 0.65 -10.41 16 25 O -0.19 -4.89 10.28 -13.05 -0.13 -5.02 16 26 C 0.04 1.01 7.07 23.07 0.16 1.17 16 27 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.09 0.76 8.09 -2.39 -0.02 0.74 16 29 H 0.06 0.90 8.09 -2.38 -0.02 0.88 16 30 H 0.17 0.68 8.06 -2.91 -0.02 0.65 16 31 H 0.17 0.54 8.06 -2.91 -0.02 0.52 16 32 H 0.15 1.42 8.06 -2.91 -0.02 1.39 16 33 H 0.18 3.65 8.06 -2.91 -0.02 3.62 16 34 H 0.41 10.42 5.88 -92.71 -0.54 9.87 16 35 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 36 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 37 H 0.06 1.72 6.86 -2.39 -0.02 1.71 16 38 H 0.05 1.91 6.62 -2.39 -0.02 1.89 16 39 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 41 H 0.05 1.91 6.62 -2.39 -0.02 1.89 16 42 H 0.06 1.73 6.86 -2.39 -0.02 1.71 16 43 H 0.02 0.83 7.20 -2.39 -0.02 0.82 16 44 H 0.02 0.75 7.57 -2.39 -0.02 0.73 16 45 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 Total: -1.00 -69.65 367.90 4.75 -64.90 By element: Atomic # 1 Polarization: 16.98 SS G_CDS: 0.40 Total: 17.39 kcal Atomic # 6 Polarization: -27.79 SS G_CDS: 4.68 Total: -23.11 kcal Atomic # 7 Polarization: -78.54 SS G_CDS: -2.01 Total: -80.55 kcal Atomic # 8 Polarization: -24.55 SS G_CDS: -0.21 Total: -24.76 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 1.88 Total: 46.13 kcal Total: -69.65 4.75 -64.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345902441.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.214 kcal (2) G-P(sol) polarization free energy of solvation -69.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.75 seconds