Wall clock time and date at job start Tue Mar 31 2020 10:53:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.46245 * 126.96407 * 2 1 4 4 C 1.39709 * 134.18820 * 0.02562 * 3 2 1 5 5 C 1.36613 * 119.71079 * 179.97438 * 4 3 2 6 6 C 1.38845 * 120.44675 * 359.97438 * 5 4 3 7 7 C 1.37794 * 120.73846 * 0.02562 * 6 5 4 8 8 C 1.39025 * 119.85936 * 359.97438 * 7 6 5 9 9 O 1.34715 * 133.24586 * 180.02562 * 8 7 6 10 10 C 1.34948 * 110.86703 * 179.97438 * 9 8 7 11 11 C 1.46970 * 125.13537 * 180.02562 * 10 9 8 12 12 O 1.21654 * 120.00258 * 179.97438 * 11 10 9 13 13 N 1.34781 * 120.00021 * 359.97438 * 11 10 9 14 14 C 1.46499 * 120.00089 * 180.02562 * 13 11 10 15 15 C 1.52991 * 109.47187 * 179.97438 * 14 13 11 16 16 C 1.53006 * 109.46951 * 299.99661 * 15 14 13 17 17 C 1.53000 * 109.47561 * 59.99822 * 15 14 13 18 18 C 1.53004 * 109.47234 * 180.02562 * 15 14 13 19 19 C 1.50706 * 109.47036 * 179.97438 * 18 15 14 20 20 H 1.07994 * 119.99908 * 359.97438 * 19 18 15 21 21 C 1.37873 * 119.99973 * 179.97438 * 19 18 15 22 22 N 1.31522 * 120.00141 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00318 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.46602 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.46913 * 120.00336 * 23 21 19 26 26 H 1.48502 * 109.47129 * 240.00548 * 23 21 19 27 27 H 1.09003 * 109.47075 * 89.99495 * 1 2 3 28 28 H 1.08995 * 109.47686 * 210.00377 * 1 2 3 29 29 H 1.09002 * 109.46679 * 330.00134 * 1 2 3 30 30 H 1.07996 * 120.13949 * 359.95436 * 4 3 2 31 31 H 1.08002 * 119.77753 * 180.02562 * 5 4 3 32 32 H 1.07997 * 119.63173 * 179.72184 * 6 5 4 33 33 H 1.08006 * 120.07020 * 179.97438 * 7 6 5 34 34 H 0.97000 * 119.99826 * 359.97438 * 13 11 10 35 35 H 1.08998 * 109.47118 * 300.00022 * 14 13 11 36 36 H 1.09003 * 109.47393 * 59.99339 * 14 13 11 37 37 H 1.09002 * 109.46817 * 60.00290 * 16 15 14 38 38 H 1.09001 * 109.47037 * 180.02562 * 16 15 14 39 39 H 1.08998 * 109.47183 * 299.99783 * 16 15 14 40 40 H 1.08994 * 109.46970 * 59.99523 * 17 15 14 41 41 H 1.08998 * 109.47447 * 180.02562 * 17 15 14 42 42 H 1.09002 * 109.46704 * 300.00018 * 17 15 14 43 43 H 1.09002 * 109.46929 * 299.99243 * 18 15 14 44 44 H 1.08995 * 109.47131 * 59.99810 * 18 15 14 45 45 H 0.96997 * 120.00555 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3864 1.1685 0.0000 4 6 2.1715 2.5490 0.0004 5 6 3.2398 3.4005 0.0008 6 6 4.5360 2.9031 0.0013 7 6 4.7692 1.5450 0.0009 8 6 3.6981 0.6588 0.0005 9 8 3.6125 -0.6857 0.0005 10 6 2.3235 -1.0853 0.0006 11 6 1.8715 -2.4837 0.0011 12 8 0.6820 -2.7386 0.0016 13 7 2.7749 -3.4840 0.0011 14 6 2.3244 -4.8780 0.0011 15 6 3.5401 -5.8068 0.0003 16 6 4.3826 -5.5432 -1.2494 17 6 4.3839 -5.5436 1.2492 18 6 3.0696 -7.2627 -0.0003 19 6 4.2671 -8.1776 -0.0017 20 1 5.2640 -7.7623 -0.0024 21 6 4.0900 -9.5450 -0.0019 22 7 2.8760 -10.0508 -0.0015 23 14 5.5743 -10.6791 -0.0043 24 1 6.8176 -9.8670 -0.0050 25 1 5.5441 -11.5363 1.2079 26 1 5.5410 -11.5354 -1.2171 27 1 -0.3633 0.0001 -1.0277 28 1 -0.3634 -0.8899 0.5138 29 1 -0.3633 0.8900 0.5138 30 1 1.1652 2.9411 0.0002 31 1 3.0749 4.4679 0.0016 32 1 5.3709 3.5881 -0.0030 33 1 5.7820 1.1698 0.0008 34 1 3.7234 -3.2808 0.0003 35 1 1.7238 -5.0657 0.8910 36 1 1.7236 -5.0657 -0.8889 37 1 4.7178 -4.5060 -1.2493 38 1 5.2485 -6.2052 -1.2501 39 1 3.7815 -5.7308 -2.1390 40 1 3.7837 -5.7313 2.1394 41 1 5.2502 -6.2050 1.2484 42 1 4.7191 -4.5064 1.2491 43 1 2.4692 -7.4509 0.8898 44 1 2.4687 -7.4499 -0.8902 45 1 2.7513 -11.0128 -0.0020 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345939197.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:40 Heat of formation + Delta-G solvation = -29.407447 kcal Electronic energy + Delta-G solvation = -25656.699449 eV Core-core repulsion = 22025.816005 eV Total energy + Delta-G solvation = -3630.883444 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 3.75 seconds Orbital eigenvalues (eV) -42.73766 -39.60605 -38.12026 -37.20088 -34.25621 -33.59977 -32.14410 -30.86181 -30.21333 -28.07116 -27.08479 -26.52865 -26.25213 -24.13366 -23.03094 -22.64227 -20.82927 -20.27284 -18.84160 -17.75442 -17.28517 -16.64107 -16.50305 -16.23111 -15.65748 -14.98449 -14.97074 -14.51801 -14.37842 -14.01727 -13.63873 -13.58341 -13.24202 -13.14351 -12.93446 -12.77073 -12.58031 -12.51114 -12.17993 -12.08180 -12.04968 -11.25698 -11.19120 -11.03879 -10.84962 -10.66276 -10.44607 -10.26650 -10.18992 -10.11014 -9.91029 -9.22352 -9.00972 -8.94135 -8.89631 -8.38312 -8.37362 -6.01364 -4.02569 0.33693 1.02323 1.62608 2.29620 3.12963 3.22894 3.29505 3.36724 3.37763 3.40294 4.21821 4.28288 4.44383 4.55472 4.67002 4.81788 4.93656 5.06810 5.15897 5.34272 5.35841 5.44538 5.55084 5.57832 5.69627 5.71750 5.76223 5.87211 5.99262 6.08462 6.14811 6.16096 6.18527 6.21527 6.28077 6.35509 6.45317 6.61523 6.68625 6.79016 7.03146 7.05185 7.09296 7.56688 7.62434 7.73775 7.97216 8.13591 8.39130 9.02279 9.60716 11.10115 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.026787 B = 0.002552 C = 0.002370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.026820 B =10970.383165 C =11813.739235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.087 4.087 3 C -0.140 4.140 4 C -0.060 4.060 5 C -0.141 4.141 6 C -0.086 4.086 7 C -0.111 4.111 8 C 0.071 3.929 9 O -0.183 6.183 10 C -0.028 4.028 11 C 0.592 3.408 12 O -0.517 6.517 13 N -0.705 5.705 14 C 0.126 3.874 15 C -0.072 4.072 16 C -0.129 4.129 17 C -0.129 4.129 18 C 0.036 3.964 19 C -0.510 4.510 20 H 0.060 0.940 21 C 0.056 3.944 22 N -0.894 5.894 23 Si 0.889 3.111 24 H -0.273 1.273 25 H -0.285 1.285 26 H -0.285 1.285 27 H 0.076 0.924 28 H 0.093 0.907 29 H 0.067 0.933 30 H 0.129 0.871 31 H 0.130 0.870 32 H 0.136 0.864 33 H 0.135 0.865 34 H 0.405 0.595 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.029 0.971 38 H 0.068 0.932 39 H 0.048 0.952 40 H 0.048 0.952 41 H 0.068 0.932 42 H 0.029 0.971 43 H 0.019 0.981 44 H 0.019 0.981 45 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.037 26.728 0.018 26.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.090 4.090 3 C -0.141 4.141 4 C -0.078 4.078 5 C -0.159 4.159 6 C -0.104 4.104 7 C -0.129 4.129 8 C 0.022 3.978 9 O -0.084 6.084 10 C -0.077 4.077 11 C 0.376 3.624 12 O -0.396 6.396 13 N -0.356 5.356 14 C 0.004 3.996 15 C -0.073 4.073 16 C -0.186 4.186 17 C -0.186 4.186 18 C -0.002 4.002 19 C -0.548 4.548 20 H 0.078 0.922 21 C -0.145 4.145 22 N -0.534 5.534 23 Si 0.717 3.283 24 H -0.198 1.198 25 H -0.211 1.211 26 H -0.211 1.211 27 H 0.095 0.905 28 H 0.112 0.888 29 H 0.085 0.915 30 H 0.147 0.853 31 H 0.148 0.852 32 H 0.154 0.846 33 H 0.153 0.847 34 H 0.241 0.759 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.048 0.952 38 H 0.087 0.913 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.087 0.913 42 H 0.048 0.952 43 H 0.038 0.962 44 H 0.038 0.962 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 0.327 26.133 0.019 26.135 hybrid contribution 1.254 -0.576 -0.017 1.380 sum 1.581 25.557 0.002 25.606 Atomic orbital electron populations 1.20438 0.87420 1.03882 1.03133 1.21390 0.97060 0.89431 1.01085 1.19836 0.92419 0.94344 1.07519 1.20350 0.99797 0.90254 0.97365 1.20788 0.92251 1.00031 1.02874 1.21000 0.97519 0.93726 0.98168 1.20020 0.96861 0.91182 1.04830 1.19742 0.95547 0.81190 1.01303 1.84035 1.27221 1.20836 1.76338 1.21968 0.80908 0.95114 1.09738 1.16664 0.86088 0.81622 0.77996 1.90844 1.15306 1.82330 1.51082 1.46174 1.09920 1.06951 1.72508 1.21776 0.97976 0.77594 1.02291 1.20920 0.93132 0.97999 0.95230 1.21782 1.00818 0.98772 0.97234 1.21778 1.00801 0.98778 0.97239 1.19104 0.96731 0.86765 0.97576 1.21211 0.92778 0.90693 1.50165 0.92183 1.25016 0.95539 0.98432 0.95552 1.69973 1.20407 1.12054 1.50940 0.86588 0.83181 0.80996 0.77534 1.19803 1.21130 1.21126 0.90498 0.88833 0.91459 0.85303 0.85174 0.84600 0.84679 0.75899 0.91232 0.91236 0.95219 0.91280 0.93263 0.93259 0.91286 0.95222 0.96240 0.96241 0.93083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.01 9.81 36.00 0.35 -0.66 16 2 C -0.09 -1.11 6.39 -102.28 -0.65 -1.77 16 3 C -0.14 -1.63 6.37 -105.19 -0.67 -2.30 16 4 C -0.06 -0.52 10.06 -39.62 -0.40 -0.92 16 5 C -0.14 -1.01 9.98 -39.94 -0.40 -1.41 16 6 C -0.09 -0.61 10.01 -39.52 -0.40 -1.01 16 7 C -0.11 -1.00 10.07 -39.45 -0.40 -1.40 16 8 C 0.07 0.85 7.41 -38.35 -0.28 0.56 16 9 O -0.18 -2.47 10.28 2.77 0.03 -2.44 16 10 C -0.03 -0.39 7.07 -36.91 -0.26 -0.65 16 11 C 0.59 9.39 7.79 -12.72 -0.10 9.29 16 12 O -0.52 -9.30 14.62 5.23 0.08 -9.22 16 13 N -0.71 -10.82 4.95 -61.53 -0.30 -11.12 16 14 C 0.13 2.20 4.56 -4.05 -0.02 2.18 16 15 C -0.07 -1.37 0.54 -154.51 -0.08 -1.45 16 16 C -0.13 -2.28 8.05 37.16 0.30 -1.98 16 17 C -0.13 -2.28 8.05 37.16 0.30 -1.98 16 18 C 0.04 0.87 4.04 -27.88 -0.11 0.75 16 19 C -0.51 -13.45 7.65 -34.44 -0.26 -13.72 16 20 H 0.06 1.53 5.68 -52.49 -0.30 1.23 16 21 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 22 N -0.89 -26.27 13.29 55.43 0.74 -25.53 16 23 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 24 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 25 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 26 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 27 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 28 H 0.09 1.18 6.37 -51.93 -0.33 0.85 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.13 0.86 8.06 -52.49 -0.42 0.43 16 31 H 0.13 0.58 8.06 -52.49 -0.42 0.15 16 32 H 0.14 0.57 8.06 -52.49 -0.42 0.14 16 33 H 0.14 0.97 8.06 -52.48 -0.42 0.55 16 34 H 0.40 5.64 5.88 -40.82 -0.24 5.40 16 35 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 36 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 37 H 0.03 0.44 6.86 -51.93 -0.36 0.08 16 38 H 0.07 1.31 6.61 -51.93 -0.34 0.97 16 39 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.07 1.31 6.62 -51.93 -0.34 0.96 16 42 H 0.03 0.44 6.86 -51.93 -0.36 0.08 16 43 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 44 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 45 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 367.86 15.07 5.54 5.54 Total: -1.00 -30.71 367.86 -8.60 -39.31 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -6.48 Total: 2.35 kcal Atomic # 6 Polarization: -11.83 SS G_CDS: -3.18 Total: -15.01 kcal Atomic # 7 Polarization: -37.08 SS G_CDS: 0.43 Total: -36.65 kcal Atomic # 8 Polarization: -11.77 SS G_CDS: 0.10 Total: -11.66 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -30.71 -8.60 -39.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345939197.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.899 kcal (2) G-P(sol) polarization free energy of solvation -30.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.75 seconds