Wall clock time and date at job start Tue Mar 31 2020 10:53:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.46245 * 126.96407 * 2 1 4 4 C 1.39709 * 134.18820 * 0.02562 * 3 2 1 5 5 C 1.36613 * 119.71079 * 179.97438 * 4 3 2 6 6 C 1.38845 * 120.44675 * 359.97438 * 5 4 3 7 7 C 1.37794 * 120.73846 * 0.02562 * 6 5 4 8 8 C 1.39025 * 119.85936 * 359.97438 * 7 6 5 9 9 O 1.34715 * 133.24586 * 180.02562 * 8 7 6 10 10 C 1.34948 * 110.86703 * 179.97438 * 9 8 7 11 11 C 1.46970 * 125.13537 * 180.02562 * 10 9 8 12 12 O 1.21654 * 120.00258 * 179.97438 * 11 10 9 13 13 N 1.34781 * 120.00021 * 359.97438 * 11 10 9 14 14 C 1.46499 * 120.00089 * 180.02562 * 13 11 10 15 15 C 1.52991 * 109.47187 * 179.97438 * 14 13 11 16 16 C 1.53006 * 109.46951 * 299.99661 * 15 14 13 17 17 C 1.53000 * 109.47561 * 59.99822 * 15 14 13 18 18 C 1.53004 * 109.47234 * 180.02562 * 15 14 13 19 19 C 1.50706 * 109.47036 * 179.97438 * 18 15 14 20 20 H 1.07994 * 119.99908 * 359.97438 * 19 18 15 21 21 C 1.37873 * 119.99973 * 179.97438 * 19 18 15 22 22 N 1.31522 * 120.00141 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00318 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.46602 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.46913 * 120.00336 * 23 21 19 26 26 H 1.48502 * 109.47129 * 240.00548 * 23 21 19 27 27 H 1.09003 * 109.47075 * 89.99495 * 1 2 3 28 28 H 1.08995 * 109.47686 * 210.00377 * 1 2 3 29 29 H 1.09002 * 109.46679 * 330.00134 * 1 2 3 30 30 H 1.07996 * 120.13949 * 359.95436 * 4 3 2 31 31 H 1.08002 * 119.77753 * 180.02562 * 5 4 3 32 32 H 1.07997 * 119.63173 * 179.72184 * 6 5 4 33 33 H 1.08006 * 120.07020 * 179.97438 * 7 6 5 34 34 H 0.97000 * 119.99826 * 359.97438 * 13 11 10 35 35 H 1.08998 * 109.47118 * 300.00022 * 14 13 11 36 36 H 1.09003 * 109.47393 * 59.99339 * 14 13 11 37 37 H 1.09002 * 109.46817 * 60.00290 * 16 15 14 38 38 H 1.09001 * 109.47037 * 180.02562 * 16 15 14 39 39 H 1.08998 * 109.47183 * 299.99783 * 16 15 14 40 40 H 1.08994 * 109.46970 * 59.99523 * 17 15 14 41 41 H 1.08998 * 109.47447 * 180.02562 * 17 15 14 42 42 H 1.09002 * 109.46704 * 300.00018 * 17 15 14 43 43 H 1.09002 * 109.46929 * 299.99243 * 18 15 14 44 44 H 1.08995 * 109.47131 * 59.99810 * 18 15 14 45 45 H 0.96997 * 120.00555 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3864 1.1685 0.0000 4 6 2.1715 2.5490 0.0004 5 6 3.2398 3.4005 0.0008 6 6 4.5360 2.9031 0.0013 7 6 4.7692 1.5450 0.0009 8 6 3.6981 0.6588 0.0005 9 8 3.6125 -0.6857 0.0005 10 6 2.3235 -1.0853 0.0006 11 6 1.8715 -2.4837 0.0011 12 8 0.6820 -2.7386 0.0016 13 7 2.7749 -3.4840 0.0011 14 6 2.3244 -4.8780 0.0011 15 6 3.5401 -5.8068 0.0003 16 6 4.3826 -5.5432 -1.2494 17 6 4.3839 -5.5436 1.2492 18 6 3.0696 -7.2627 -0.0003 19 6 4.2671 -8.1776 -0.0017 20 1 5.2640 -7.7623 -0.0024 21 6 4.0900 -9.5450 -0.0019 22 7 2.8760 -10.0508 -0.0015 23 14 5.5743 -10.6791 -0.0043 24 1 6.8176 -9.8670 -0.0050 25 1 5.5441 -11.5363 1.2079 26 1 5.5410 -11.5354 -1.2171 27 1 -0.3633 0.0001 -1.0277 28 1 -0.3634 -0.8899 0.5138 29 1 -0.3633 0.8900 0.5138 30 1 1.1652 2.9411 0.0002 31 1 3.0749 4.4679 0.0016 32 1 5.3709 3.5881 -0.0030 33 1 5.7820 1.1698 0.0008 34 1 3.7234 -3.2808 0.0003 35 1 1.7238 -5.0657 0.8910 36 1 1.7236 -5.0657 -0.8889 37 1 4.7178 -4.5060 -1.2493 38 1 5.2485 -6.2052 -1.2501 39 1 3.7815 -5.7308 -2.1390 40 1 3.7837 -5.7313 2.1394 41 1 5.2502 -6.2050 1.2484 42 1 4.7191 -4.5064 1.2491 43 1 2.4692 -7.4509 0.8898 44 1 2.4687 -7.4499 -0.8902 45 1 2.7513 -11.0128 -0.0020 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345939197.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:36 Heat of formation + Delta-G solvation = -46.338304 kcal Electronic energy + Delta-G solvation = -25657.433626 eV Core-core repulsion = 22025.816005 eV Total energy + Delta-G solvation = -3631.617621 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -43.59957 -40.88510 -38.87402 -38.68181 -35.49071 -34.87406 -33.99906 -31.53142 -31.02901 -29.34498 -28.77624 -28.00742 -27.54007 -25.42655 -24.27385 -23.69747 -21.89708 -21.21809 -20.14663 -19.07682 -18.38121 -18.08098 -17.60676 -17.21061 -16.94365 -16.42078 -16.28382 -15.91076 -15.23818 -15.12656 -14.88307 -14.74996 -14.54354 -14.31684 -14.13859 -13.96484 -13.81901 -13.77657 -13.26469 -13.22701 -12.91091 -12.76471 -12.70921 -12.64070 -12.37147 -12.25895 -11.98100 -11.92533 -11.57997 -11.41653 -10.99417 -10.96414 -10.86609 -10.52101 -10.27176 -9.67913 -9.22006 -8.14328 -6.21716 -0.50893 0.33958 0.76089 1.37120 1.41358 1.42702 1.54191 1.96724 2.05706 2.44389 2.71179 3.20300 3.31908 3.52153 3.73803 3.88012 3.95356 4.03800 4.12538 4.18014 4.29886 4.41144 4.50635 4.62912 4.64711 4.67465 4.69965 4.73043 4.90318 4.91576 4.98954 5.02874 5.08834 5.16715 5.24787 5.35563 5.38314 5.41552 5.47473 5.48033 5.49225 5.54819 5.57228 5.77417 5.89246 6.00082 6.29208 6.37509 6.91006 6.93092 7.45828 8.98310 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.026787 B = 0.002552 C = 0.002370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.026820 B =10970.383165 C =11813.739235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.080 4.080 3 C -0.164 4.164 4 C -0.065 4.065 5 C -0.135 4.135 6 C -0.071 4.071 7 C -0.125 4.125 8 C 0.047 3.953 9 O -0.194 6.194 10 C -0.061 4.061 11 C 0.594 3.406 12 O -0.547 6.547 13 N -0.698 5.698 14 C 0.139 3.861 15 C -0.064 4.064 16 C -0.123 4.123 17 C -0.123 4.123 18 C 0.040 3.960 19 C -0.512 4.512 20 H 0.071 0.929 21 C -0.005 4.005 22 N -0.937 5.937 23 Si 0.958 3.042 24 H -0.258 1.258 25 H -0.284 1.284 26 H -0.284 1.284 27 H 0.083 0.917 28 H 0.072 0.928 29 H 0.094 0.906 30 H 0.150 0.850 31 H 0.165 0.835 32 H 0.173 0.827 33 H 0.150 0.850 34 H 0.413 0.587 35 H 0.057 0.943 36 H 0.057 0.943 37 H 0.062 0.938 38 H 0.058 0.942 39 H 0.040 0.960 40 H 0.040 0.960 41 H 0.058 0.942 42 H 0.062 0.938 43 H -0.010 1.010 44 H -0.010 1.010 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.201 30.401 -0.001 30.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.083 4.083 3 C -0.165 4.165 4 C -0.083 4.083 5 C -0.153 4.153 6 C -0.089 4.089 7 C -0.144 4.144 8 C -0.001 4.001 9 O -0.097 6.097 10 C -0.110 4.110 11 C 0.380 3.620 12 O -0.427 6.427 13 N -0.349 5.349 14 C 0.016 3.984 15 C -0.065 4.065 16 C -0.180 4.180 17 C -0.180 4.180 18 C 0.002 3.998 19 C -0.550 4.550 20 H 0.089 0.911 21 C -0.202 4.202 22 N -0.579 5.579 23 Si 0.783 3.217 24 H -0.182 1.182 25 H -0.210 1.210 26 H -0.210 1.210 27 H 0.102 0.898 28 H 0.091 0.909 29 H 0.112 0.888 30 H 0.167 0.833 31 H 0.183 0.817 32 H 0.190 0.810 33 H 0.168 0.832 34 H 0.251 0.749 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.060 0.940 40 H 0.060 0.940 41 H 0.077 0.923 42 H 0.081 0.919 43 H 0.008 0.992 44 H 0.008 0.992 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 2.523 29.833 0.001 29.940 hybrid contribution 0.571 -1.485 -0.012 1.591 sum 3.094 28.348 -0.011 28.517 Atomic orbital electron populations 1.20473 0.86550 1.04159 1.03591 1.21767 0.97830 0.89875 0.98800 1.20037 0.91897 0.95279 1.09281 1.20718 1.01665 0.89115 0.96793 1.21272 0.91676 1.01604 1.00744 1.21530 0.98880 0.93283 0.95194 1.20418 0.96949 0.91753 1.05255 1.20304 0.96872 0.80734 1.02194 1.83961 1.26585 1.22014 1.77133 1.21547 0.81903 0.94271 1.13275 1.16849 0.85650 0.82409 0.77056 1.90820 1.16430 1.83099 1.52382 1.45947 1.10354 1.05821 1.72757 1.21403 0.97005 0.78791 1.01209 1.20714 0.93984 0.94812 0.96944 1.21710 0.99820 1.00563 0.95950 1.21706 0.99804 1.00571 0.95956 1.18974 0.95615 0.90444 0.94717 1.21601 0.93699 0.91079 1.48643 0.91064 1.25930 0.98310 1.00420 0.95518 1.70120 1.22785 1.12332 1.52622 0.85500 0.80050 0.78822 0.77290 1.18188 1.21034 1.21028 0.89827 0.90874 0.88776 0.83253 0.81709 0.80996 0.83204 0.74888 0.92437 0.92445 0.91931 0.92323 0.94049 0.94041 0.92326 0.91934 0.99174 0.99174 0.93159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.98 9.81 71.23 0.70 -1.28 16 2 C -0.08 -2.03 6.39 -18.35 -0.12 -2.15 16 3 C -0.16 -3.58 6.37 -20.23 -0.13 -3.71 16 4 C -0.07 -0.94 10.06 22.25 0.22 -0.72 16 5 C -0.14 -1.33 9.98 22.03 0.22 -1.11 16 6 C -0.07 -0.71 10.01 22.31 0.22 -0.48 16 7 C -0.13 -1.96 10.07 22.35 0.23 -1.73 16 8 C 0.05 1.07 7.41 23.07 0.17 1.24 16 9 O -0.19 -5.23 10.28 -13.00 -0.13 -5.36 16 10 C -0.06 -1.76 7.07 24.00 0.17 -1.59 16 11 C 0.59 19.44 7.79 86.53 0.67 20.11 16 12 O -0.55 -20.59 14.62 -4.20 -0.06 -20.65 16 13 N -0.70 -21.67 4.95 -466.82 -2.31 -23.99 16 14 C 0.14 5.06 4.56 86.38 0.39 5.45 16 15 C -0.06 -2.47 0.54 -52.18 -0.03 -2.50 16 16 C -0.12 -4.30 8.05 71.98 0.58 -3.72 16 17 C -0.12 -4.30 8.05 71.98 0.58 -3.72 16 18 C 0.04 2.04 4.04 29.85 0.12 2.16 16 19 C -0.51 -27.49 7.65 25.60 0.20 -27.30 16 20 H 0.07 3.60 5.68 -2.91 -0.02 3.59 16 21 C 0.00 -0.28 5.46 84.65 0.46 0.19 16 22 N -0.94 -56.92 13.29 21.45 0.28 -56.63 16 23 Si 0.96 43.78 29.54 68.60 2.03 45.80 16 24 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 25 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 26 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 27 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.07 1.90 6.37 -2.39 -0.02 1.89 16 29 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.15 1.45 8.06 -2.91 -0.02 1.43 16 31 H 0.17 0.50 8.06 -2.91 -0.02 0.48 16 32 H 0.17 0.46 8.06 -2.91 -0.02 0.44 16 33 H 0.15 1.77 8.06 -2.91 -0.02 1.75 16 34 H 0.41 11.23 5.88 -92.71 -0.54 10.69 16 35 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 36 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 37 H 0.06 1.76 6.86 -2.39 -0.02 1.75 16 38 H 0.06 2.17 6.61 -2.39 -0.02 2.15 16 39 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.06 2.17 6.62 -2.39 -0.02 2.15 16 42 H 0.06 1.76 6.86 -2.39 -0.02 1.75 16 43 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 44 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 45 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 Total: -1.00 -69.81 367.86 4.93 -64.89 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: 0.46 Total: 16.80 kcal Atomic # 6 Polarization: -25.52 SS G_CDS: 4.66 Total: -20.86 kcal Atomic # 7 Polarization: -78.59 SS G_CDS: -2.03 Total: -80.62 kcal Atomic # 8 Polarization: -25.82 SS G_CDS: -0.20 Total: -26.01 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.80 kcal Total: -69.81 4.93 -64.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345939197.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.547 kcal (2) G-P(sol) polarization free energy of solvation -69.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds