Wall clock time and date at job start Tue Mar 31 2020 10:53:36
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50697 * 1
3 3 C 1.46245 * 126.96407 * 2 1
4 4 C 1.39709 * 134.18820 * 0.02562 * 3 2 1
5 5 C 1.36613 * 119.71079 * 179.97438 * 4 3 2
6 6 C 1.38845 * 120.44675 * 359.97438 * 5 4 3
7 7 C 1.37794 * 120.73846 * 0.02562 * 6 5 4
8 8 C 1.39025 * 119.85936 * 359.97438 * 7 6 5
9 9 O 1.34715 * 133.24586 * 180.02562 * 8 7 6
10 10 C 1.34948 * 110.86703 * 179.97438 * 9 8 7
11 11 C 1.46970 * 125.13537 * 180.02562 * 10 9 8
12 12 O 1.21654 * 120.00258 * 179.97438 * 11 10 9
13 13 N 1.34781 * 120.00021 * 359.97438 * 11 10 9
14 14 C 1.46499 * 120.00089 * 180.02562 * 13 11 10
15 15 C 1.52991 * 109.47187 * 179.97438 * 14 13 11
16 16 C 1.53006 * 109.46951 * 299.99661 * 15 14 13
17 17 C 1.53000 * 109.47561 * 59.99822 * 15 14 13
18 18 C 1.53004 * 109.47234 * 180.02562 * 15 14 13
19 19 C 1.50706 * 109.47036 * 179.97438 * 18 15 14
20 20 H 1.07994 * 119.99908 * 359.97438 * 19 18 15
21 21 C 1.37873 * 119.99973 * 179.97438 * 19 18 15
22 22 N 1.31522 * 120.00141 * 0.02562 * 21 19 18
23 23 Si 1.86799 * 120.00318 * 179.97438 * 21 19 18
24 24 H 1.48503 * 109.46602 * 0.02562 * 23 21 19
25 25 H 1.48498 * 109.46913 * 120.00336 * 23 21 19
26 26 H 1.48502 * 109.47129 * 240.00548 * 23 21 19
27 27 H 1.09003 * 109.47075 * 89.99495 * 1 2 3
28 28 H 1.08995 * 109.47686 * 210.00377 * 1 2 3
29 29 H 1.09002 * 109.46679 * 330.00134 * 1 2 3
30 30 H 1.07996 * 120.13949 * 359.95436 * 4 3 2
31 31 H 1.08002 * 119.77753 * 180.02562 * 5 4 3
32 32 H 1.07997 * 119.63173 * 179.72184 * 6 5 4
33 33 H 1.08006 * 120.07020 * 179.97438 * 7 6 5
34 34 H 0.97000 * 119.99826 * 359.97438 * 13 11 10
35 35 H 1.08998 * 109.47118 * 300.00022 * 14 13 11
36 36 H 1.09003 * 109.47393 * 59.99339 * 14 13 11
37 37 H 1.09002 * 109.46817 * 60.00290 * 16 15 14
38 38 H 1.09001 * 109.47037 * 180.02562 * 16 15 14
39 39 H 1.08998 * 109.47183 * 299.99783 * 16 15 14
40 40 H 1.08994 * 109.46970 * 59.99523 * 17 15 14
41 41 H 1.08998 * 109.47447 * 180.02562 * 17 15 14
42 42 H 1.09002 * 109.46704 * 300.00018 * 17 15 14
43 43 H 1.09002 * 109.46929 * 299.99243 * 18 15 14
44 44 H 1.08995 * 109.47131 * 59.99810 * 18 15 14
45 45 H 0.96997 * 120.00555 * 179.97438 * 22 21 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.3864 1.1685 0.0000
4 6 2.1715 2.5490 0.0004
5 6 3.2398 3.4005 0.0008
6 6 4.5360 2.9031 0.0013
7 6 4.7692 1.5450 0.0009
8 6 3.6981 0.6588 0.0005
9 8 3.6125 -0.6857 0.0005
10 6 2.3235 -1.0853 0.0006
11 6 1.8715 -2.4837 0.0011
12 8 0.6820 -2.7386 0.0016
13 7 2.7749 -3.4840 0.0011
14 6 2.3244 -4.8780 0.0011
15 6 3.5401 -5.8068 0.0003
16 6 4.3826 -5.5432 -1.2494
17 6 4.3839 -5.5436 1.2492
18 6 3.0696 -7.2627 -0.0003
19 6 4.2671 -8.1776 -0.0017
20 1 5.2640 -7.7623 -0.0024
21 6 4.0900 -9.5450 -0.0019
22 7 2.8760 -10.0508 -0.0015
23 14 5.5743 -10.6791 -0.0043
24 1 6.8176 -9.8670 -0.0050
25 1 5.5441 -11.5363 1.2079
26 1 5.5410 -11.5354 -1.2171
27 1 -0.3633 0.0001 -1.0277
28 1 -0.3634 -0.8899 0.5138
29 1 -0.3633 0.8900 0.5138
30 1 1.1652 2.9411 0.0002
31 1 3.0749 4.4679 0.0016
32 1 5.3709 3.5881 -0.0030
33 1 5.7820 1.1698 0.0008
34 1 3.7234 -3.2808 0.0003
35 1 1.7238 -5.0657 0.8910
36 1 1.7236 -5.0657 -0.8889
37 1 4.7178 -4.5060 -1.2493
38 1 5.2485 -6.2052 -1.2501
39 1 3.7815 -5.7308 -2.1390
40 1 3.7837 -5.7313 2.1394
41 1 5.2502 -6.2050 1.2484
42 1 4.7191 -4.5064 1.2491
43 1 2.4692 -7.4509 0.8898
44 1 2.4687 -7.4499 -0.8902
45 1 2.7513 -11.0128 -0.0020
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000345939197.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:53:36
Heat of formation + Delta-G solvation = -46.338304 kcal
Electronic energy + Delta-G solvation = -25657.433626 eV
Core-core repulsion = 22025.816005 eV
Total energy + Delta-G solvation = -3631.617621 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 315.162 amu
Computer time = 1.68 seconds
Orbital eigenvalues (eV)
-43.59957 -40.88510 -38.87402 -38.68181 -35.49071 -34.87406 -33.99906 -31.53142
-31.02901 -29.34498 -28.77624 -28.00742 -27.54007 -25.42655 -24.27385 -23.69747
-21.89708 -21.21809 -20.14663 -19.07682 -18.38121 -18.08098 -17.60676 -17.21061
-16.94365 -16.42078 -16.28382 -15.91076 -15.23818 -15.12656 -14.88307 -14.74996
-14.54354 -14.31684 -14.13859 -13.96484 -13.81901 -13.77657 -13.26469 -13.22701
-12.91091 -12.76471 -12.70921 -12.64070 -12.37147 -12.25895 -11.98100 -11.92533
-11.57997 -11.41653 -10.99417 -10.96414 -10.86609 -10.52101 -10.27176 -9.67913
-9.22006 -8.14328 -6.21716 -0.50893 0.33958 0.76089 1.37120 1.41358
1.42702 1.54191 1.96724 2.05706 2.44389 2.71179 3.20300 3.31908
3.52153 3.73803 3.88012 3.95356 4.03800 4.12538 4.18014 4.29886
4.41144 4.50635 4.62912 4.64711 4.67465 4.69965 4.73043 4.90318
4.91576 4.98954 5.02874 5.08834 5.16715 5.24787 5.35563 5.38314
5.41552 5.47473 5.48033 5.49225 5.54819 5.57228 5.77417 5.89246
6.00082 6.29208 6.37509 6.91006 6.93092 7.45828 8.98310
Molecular weight = 315.16amu
Principal moments of inertia in cm(-1)
A = 0.026787 B = 0.002552 C = 0.002370
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1045.026820 B =10970.383165 C =11813.739235
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.092 4.092
2 C -0.080 4.080
3 C -0.164 4.164
4 C -0.065 4.065
5 C -0.135 4.135
6 C -0.071 4.071
7 C -0.125 4.125
8 C 0.047 3.953
9 O -0.194 6.194
10 C -0.061 4.061
11 C 0.594 3.406
12 O -0.547 6.547
13 N -0.698 5.698
14 C 0.139 3.861
15 C -0.064 4.064
16 C -0.123 4.123
17 C -0.123 4.123
18 C 0.040 3.960
19 C -0.512 4.512
20 H 0.071 0.929
21 C -0.005 4.005
22 N -0.937 5.937
23 Si 0.958 3.042
24 H -0.258 1.258
25 H -0.284 1.284
26 H -0.284 1.284
27 H 0.083 0.917
28 H 0.072 0.928
29 H 0.094 0.906
30 H 0.150 0.850
31 H 0.165 0.835
32 H 0.173 0.827
33 H 0.150 0.850
34 H 0.413 0.587
35 H 0.057 0.943
36 H 0.057 0.943
37 H 0.062 0.938
38 H 0.058 0.942
39 H 0.040 0.960
40 H 0.040 0.960
41 H 0.058 0.942
42 H 0.062 0.938
43 H -0.010 1.010
44 H -0.010 1.010
45 H 0.260 0.740
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.201 30.401 -0.001 30.569
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.148 4.148
2 C -0.083 4.083
3 C -0.165 4.165
4 C -0.083 4.083
5 C -0.153 4.153
6 C -0.089 4.089
7 C -0.144 4.144
8 C -0.001 4.001
9 O -0.097 6.097
10 C -0.110 4.110
11 C 0.380 3.620
12 O -0.427 6.427
13 N -0.349 5.349
14 C 0.016 3.984
15 C -0.065 4.065
16 C -0.180 4.180
17 C -0.180 4.180
18 C 0.002 3.998
19 C -0.550 4.550
20 H 0.089 0.911
21 C -0.202 4.202
22 N -0.579 5.579
23 Si 0.783 3.217
24 H -0.182 1.182
25 H -0.210 1.210
26 H -0.210 1.210
27 H 0.102 0.898
28 H 0.091 0.909
29 H 0.112 0.888
30 H 0.167 0.833
31 H 0.183 0.817
32 H 0.190 0.810
33 H 0.168 0.832
34 H 0.251 0.749
35 H 0.076 0.924
36 H 0.076 0.924
37 H 0.081 0.919
38 H 0.077 0.923
39 H 0.060 0.940
40 H 0.060 0.940
41 H 0.077 0.923
42 H 0.081 0.919
43 H 0.008 0.992
44 H 0.008 0.992
45 H 0.068 0.932
Dipole moment (debyes) X Y Z Total
from point charges 2.523 29.833 0.001 29.940
hybrid contribution 0.571 -1.485 -0.012 1.591
sum 3.094 28.348 -0.011 28.517
Atomic orbital electron populations
1.20473 0.86550 1.04159 1.03591 1.21767 0.97830 0.89875 0.98800
1.20037 0.91897 0.95279 1.09281 1.20718 1.01665 0.89115 0.96793
1.21272 0.91676 1.01604 1.00744 1.21530 0.98880 0.93283 0.95194
1.20418 0.96949 0.91753 1.05255 1.20304 0.96872 0.80734 1.02194
1.83961 1.26585 1.22014 1.77133 1.21547 0.81903 0.94271 1.13275
1.16849 0.85650 0.82409 0.77056 1.90820 1.16430 1.83099 1.52382
1.45947 1.10354 1.05821 1.72757 1.21403 0.97005 0.78791 1.01209
1.20714 0.93984 0.94812 0.96944 1.21710 0.99820 1.00563 0.95950
1.21706 0.99804 1.00571 0.95956 1.18974 0.95615 0.90444 0.94717
1.21601 0.93699 0.91079 1.48643 0.91064 1.25930 0.98310 1.00420
0.95518 1.70120 1.22785 1.12332 1.52622 0.85500 0.80050 0.78822
0.77290 1.18188 1.21034 1.21028 0.89827 0.90874 0.88776 0.83253
0.81709 0.80996 0.83204 0.74888 0.92437 0.92445 0.91931 0.92323
0.94049 0.94041 0.92326 0.91934 0.99174 0.99174 0.93159
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.09 -1.98 9.81 71.23 0.70 -1.28 16
2 C -0.08 -2.03 6.39 -18.35 -0.12 -2.15 16
3 C -0.16 -3.58 6.37 -20.23 -0.13 -3.71 16
4 C -0.07 -0.94 10.06 22.25 0.22 -0.72 16
5 C -0.14 -1.33 9.98 22.03 0.22 -1.11 16
6 C -0.07 -0.71 10.01 22.31 0.22 -0.48 16
7 C -0.13 -1.96 10.07 22.35 0.23 -1.73 16
8 C 0.05 1.07 7.41 23.07 0.17 1.24 16
9 O -0.19 -5.23 10.28 -13.00 -0.13 -5.36 16
10 C -0.06 -1.76 7.07 24.00 0.17 -1.59 16
11 C 0.59 19.44 7.79 86.53 0.67 20.11 16
12 O -0.55 -20.59 14.62 -4.20 -0.06 -20.65 16
13 N -0.70 -21.67 4.95 -466.82 -2.31 -23.99 16
14 C 0.14 5.06 4.56 86.38 0.39 5.45 16
15 C -0.06 -2.47 0.54 -52.18 -0.03 -2.50 16
16 C -0.12 -4.30 8.05 71.98 0.58 -3.72 16
17 C -0.12 -4.30 8.05 71.98 0.58 -3.72 16
18 C 0.04 2.04 4.04 29.85 0.12 2.16 16
19 C -0.51 -27.49 7.65 25.60 0.20 -27.30 16
20 H 0.07 3.60 5.68 -2.91 -0.02 3.59 16
21 C 0.00 -0.28 5.46 84.65 0.46 0.19 16
22 N -0.94 -56.92 13.29 21.45 0.28 -56.63 16
23 Si 0.96 43.78 29.54 68.60 2.03 45.80 16
24 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16
25 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16
26 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16
27 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16
28 H 0.07 1.90 6.37 -2.39 -0.02 1.89 16
29 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16
30 H 0.15 1.45 8.06 -2.91 -0.02 1.43 16
31 H 0.17 0.50 8.06 -2.91 -0.02 0.48 16
32 H 0.17 0.46 8.06 -2.91 -0.02 0.44 16
33 H 0.15 1.77 8.06 -2.91 -0.02 1.75 16
34 H 0.41 11.23 5.88 -92.71 -0.54 10.69 16
35 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16
36 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16
37 H 0.06 1.76 6.86 -2.39 -0.02 1.75 16
38 H 0.06 2.17 6.61 -2.39 -0.02 2.15 16
39 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16
40 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16
41 H 0.06 2.17 6.62 -2.39 -0.02 2.15 16
42 H 0.06 1.76 6.86 -2.39 -0.02 1.75 16
43 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16
44 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16
45 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16
Total: -1.00 -69.81 367.86 4.93 -64.89
By element:
Atomic # 1 Polarization: 16.34 SS G_CDS: 0.46 Total: 16.80 kcal
Atomic # 6 Polarization: -25.52 SS G_CDS: 4.66 Total: -20.86 kcal
Atomic # 7 Polarization: -78.59 SS G_CDS: -2.03 Total: -80.62 kcal
Atomic # 8 Polarization: -25.82 SS G_CDS: -0.20 Total: -26.01 kcal
Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.80 kcal
Total: -69.81 4.93 -64.89 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000345939197.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 18.547 kcal
(2) G-P(sol) polarization free energy of solvation -69.812 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.265 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.926 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.886 kcal
(6) G-S(sol) free energy of system = (1) + (5) -46.338 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.68 seconds