Wall clock time and date at job start Tue Mar 31 2020 11:00:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50704 * 119.99758 * 2 1 4 4 N 1.46501 * 109.47157 * 125.37797 * 3 2 1 5 5 C 1.46503 * 120.00250 * 92.98404 * 4 3 2 6 6 C 1.50696 * 109.47323 * 89.99347 * 5 4 3 7 7 H 1.08000 * 120.00169 * 0.02562 * 6 5 4 8 8 C 1.37878 * 119.99663 * 180.02562 * 6 5 4 9 9 N 1.31516 * 120.00204 * 359.97438 * 8 6 5 10 10 Si 1.86807 * 119.99842 * 180.02562 * 8 6 5 11 11 H 1.48505 * 109.47224 * 59.99580 * 10 8 6 12 12 H 1.48500 * 109.47179 * 179.97438 * 10 8 6 13 13 H 1.48502 * 109.46914 * 299.99738 * 10 8 6 14 14 C 1.34776 * 120.00063 * 272.97447 * 4 3 2 15 15 O 1.21284 * 119.99643 * 4.54107 * 14 4 3 16 16 C 1.50697 * 120.00120 * 184.53397 * 14 4 3 17 17 H 1.08998 * 110.83434 * 329.56973 * 16 14 4 18 18 C 1.54709 * 110.93641 * 93.27618 * 16 14 4 19 19 O 1.43833 * 102.75692 * 143.41752 * 18 16 14 20 20 C 1.36135 * 109.26196 * 332.30327 * 19 18 16 21 21 C 1.39276 * 129.88839 * 198.36659 * 20 19 18 22 22 C 1.37935 * 120.24461 * 181.01178 * 21 20 19 23 23 C 1.50698 * 119.82769 * 179.97438 * 22 21 20 24 24 C 1.38291 * 120.34427 * 359.96231 * 22 21 20 25 25 C 1.50700 * 120.11099 * 179.87766 * 24 22 21 26 26 C 1.38345 * 119.77070 * 359.88117 * 24 22 21 27 27 C 1.37740 * 119.98050 * 359.96074 * 26 24 22 28 28 H 1.07997 * 119.99623 * 174.80875 * 1 2 3 29 29 H 1.08001 * 120.00156 * 354.80951 * 1 2 3 30 30 H 1.07996 * 120.00264 * 179.97438 * 2 1 3 31 31 H 1.08998 * 109.47597 * 5.37533 * 3 2 1 32 32 H 1.09000 * 109.46982 * 245.37400 * 3 2 1 33 33 H 1.08997 * 109.46938 * 210.00154 * 5 4 3 34 34 H 1.09002 * 109.46823 * 329.99748 * 5 4 3 35 35 H 0.97004 * 119.99549 * 180.02562 * 9 8 6 36 36 H 1.09004 * 110.74985 * 261.76695 * 18 16 14 37 37 H 1.09009 * 110.74921 * 25.12153 * 18 16 14 38 38 H 1.08004 * 119.88181 * 0.99382 * 21 20 19 39 39 H 1.09000 * 109.46902 * 90.00115 * 23 22 21 40 40 H 1.08999 * 109.47194 * 210.00341 * 23 22 21 41 41 H 1.08997 * 109.47131 * 330.00080 * 23 22 21 42 42 H 1.09006 * 109.46897 * 90.00249 * 25 24 22 43 43 H 1.09004 * 109.47123 * 209.99796 * 25 24 22 44 44 H 1.08995 * 109.47456 * 330.00341 * 25 24 22 45 45 H 1.08005 * 120.01107 * 179.97438 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 3.0001 1.3283 1.1262 5 6 4.3833 0.8837 0.9378 6 6 5.2370 2.0567 0.5303 7 1 4.7937 3.0357 0.4227 8 6 6.5840 1.8801 0.2947 9 7 7.1238 0.6881 0.4261 10 14 7.6424 3.3344 -0.2098 11 1 7.5968 4.3718 0.8518 12 1 9.0444 2.8836 -0.4009 13 1 7.1275 3.9039 -1.4810 14 6 2.5895 1.7588 2.3355 15 8 1.4253 2.0489 2.5127 16 6 3.5769 1.8795 3.4676 17 1 4.3721 1.1406 3.3689 18 6 4.1588 3.3110 3.5433 19 8 4.2877 3.5269 4.9595 20 6 3.3588 2.7776 5.6144 21 6 2.8684 2.8973 6.9125 22 6 1.9300 2.0040 7.3858 23 6 1.4063 2.1420 8.7921 24 6 1.4673 0.9825 6.5766 25 6 0.4441 0.0078 7.1001 26 6 1.9469 0.8586 5.2849 27 6 2.8815 1.7515 4.8091 28 1 -0.5399 -0.9315 -0.0846 29 1 -0.5400 0.9315 0.0846 30 1 1.8500 -0.9352 0.0004 31 1 1.3591 2.1314 0.0963 32 1 2.6159 1.4057 -0.9342 33 1 4.7610 0.4662 1.8711 34 1 4.4171 0.1218 0.1590 35 1 8.0716 0.5641 0.2607 36 1 5.1320 3.3586 3.0546 37 1 3.4691 4.0319 3.1041 38 1 3.2243 3.6924 7.5509 39 1 0.5268 2.7859 8.7907 40 1 1.1361 1.1588 9.1773 41 1 2.1771 2.5810 9.4255 42 1 -0.5571 0.3829 6.8876 43 1 0.5807 -0.9584 6.6142 44 1 0.5684 -0.1062 8.1769 45 1 1.5885 0.0620 4.6496 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359380563.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:14 Heat of formation + Delta-G solvation = -24.265247 kcal Electronic energy + Delta-G solvation = -26792.479148 eV Core-core repulsion = 23161.818687 eV Total energy + Delta-G solvation = -3630.660462 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.09189 -38.91578 -37.86625 -35.50024 -33.71739 -32.86795 -32.23710 -31.80361 -30.61411 -27.54846 -26.91352 -26.09898 -25.83194 -23.18915 -22.66311 -22.03624 -20.38032 -19.60681 -18.37322 -17.04604 -16.78037 -16.53026 -16.15676 -15.57252 -15.26064 -14.76207 -14.41406 -14.25743 -14.10932 -14.03769 -13.85700 -13.51579 -12.92608 -12.79890 -12.61694 -12.59022 -12.43475 -12.16061 -11.98103 -11.82987 -11.73724 -11.41150 -11.34382 -11.16264 -11.04351 -10.89594 -10.77960 -10.48891 -10.27664 -10.16060 -9.86836 -9.36487 -8.97469 -8.64959 -8.45991 -7.84538 -7.68242 -6.27301 -4.36275 1.49914 1.62281 2.53721 3.18082 3.19091 3.25110 3.28215 3.55868 3.76555 4.05526 4.26312 4.72111 4.89101 5.04775 5.05321 5.07470 5.18518 5.28743 5.32028 5.37558 5.42553 5.50532 5.51760 5.60256 5.71047 5.79548 5.84333 5.89135 5.92736 6.02417 6.08601 6.12608 6.17075 6.28492 6.36607 6.49040 6.61857 6.69503 6.78227 6.89248 6.89798 7.07414 7.09671 7.41529 7.47519 7.66247 7.94293 8.20982 8.68367 8.89221 9.32486 10.79120 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.012015 B = 0.004801 C = 0.003721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2329.808486 B = 5830.417875 C = 7522.131236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.158 4.158 3 C 0.146 3.854 4 N -0.590 5.590 5 C 0.234 3.766 6 C -0.544 4.544 7 H 0.062 0.938 8 C 0.068 3.932 9 N -0.887 5.887 10 Si 0.894 3.106 11 H -0.273 1.273 12 H -0.285 1.285 13 H -0.275 1.275 14 C 0.528 3.472 15 O -0.557 6.557 16 C -0.094 4.094 17 H 0.125 0.875 18 C 0.077 3.923 19 O -0.304 6.304 20 C 0.109 3.891 21 C -0.142 4.142 22 C -0.059 4.059 23 C -0.112 4.112 24 C -0.122 4.122 25 C -0.107 4.107 26 C -0.047 4.047 27 C -0.143 4.143 28 H 0.091 0.909 29 H 0.096 0.904 30 H 0.106 0.894 31 H 0.073 0.927 32 H 0.090 0.910 33 H 0.038 0.962 34 H 0.038 0.962 35 H 0.267 0.733 36 H 0.129 0.871 37 H 0.074 0.926 38 H 0.124 0.876 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.064 0.936 42 H 0.066 0.934 43 H 0.062 0.938 44 H 0.067 0.933 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.373 -0.503 9.506 13.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.177 4.177 3 C 0.023 3.977 4 N -0.320 5.320 5 C 0.114 3.886 6 C -0.583 4.583 7 H 0.080 0.920 8 C -0.136 4.136 9 N -0.525 5.525 10 Si 0.721 3.279 11 H -0.199 1.199 12 H -0.211 1.211 13 H -0.201 1.201 14 C 0.315 3.685 15 O -0.437 6.437 16 C -0.115 4.115 17 H 0.143 0.857 18 C 0.002 3.998 19 O -0.218 6.218 20 C 0.063 3.937 21 C -0.161 4.161 22 C -0.059 4.059 23 C -0.169 4.169 24 C -0.123 4.123 25 C -0.163 4.163 26 C -0.065 4.065 27 C -0.144 4.144 28 H 0.110 0.890 29 H 0.114 0.886 30 H 0.124 0.876 31 H 0.092 0.908 32 H 0.108 0.892 33 H 0.056 0.944 34 H 0.057 0.943 35 H 0.077 0.923 36 H 0.147 0.853 37 H 0.093 0.907 38 H 0.142 0.858 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.083 0.917 42 H 0.084 0.916 43 H 0.081 0.919 44 H 0.085 0.915 45 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -9.594 -0.306 9.629 13.597 hybrid contribution 0.886 0.546 -0.784 1.303 sum -8.708 0.239 8.845 12.415 Atomic orbital electron populations 1.23731 0.95871 1.01410 1.01489 1.23380 0.96128 0.99281 0.98960 1.20458 0.92069 0.94803 0.90386 1.48245 1.13421 1.62332 1.07998 1.19533 0.75029 0.95830 0.98173 1.21433 0.93240 0.95246 1.48344 0.91970 1.24937 0.97812 0.95973 0.94835 1.69905 1.13060 1.21593 1.47941 0.86614 0.79346 0.82499 0.79432 1.19858 1.21066 1.20064 1.19891 0.88018 0.77152 0.83487 1.90621 1.18472 1.51483 1.83134 1.21507 0.98287 1.00753 0.90938 0.85705 1.23786 1.03966 0.93419 0.78671 1.86830 1.50647 1.64711 1.19638 1.19526 0.89889 0.90491 0.93747 1.19942 1.00440 1.02099 0.93592 1.19318 0.96085 0.94446 0.96066 1.20818 1.01129 1.02538 0.92377 1.19503 1.00672 0.98236 0.93859 1.20727 0.97199 0.97480 1.00916 1.20073 0.94292 0.97830 0.94299 1.20401 1.00900 0.97710 0.95369 0.89044 0.88616 0.87569 0.90823 0.89223 0.94382 0.94348 0.92298 0.85331 0.90740 0.85770 0.91180 0.91081 0.91669 0.91559 0.91886 0.91473 0.86228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.72 14.32 29.02 0.42 -2.30 16 2 C -0.16 -2.57 9.83 -36.02 -0.35 -2.92 16 3 C 0.15 2.63 5.78 -5.19 -0.03 2.60 16 4 N -0.59 -11.98 2.45 -176.43 -0.43 -12.41 16 5 C 0.23 5.26 4.91 -5.19 -0.03 5.23 16 6 C -0.54 -13.16 9.13 -34.44 -0.31 -13.48 16 7 H 0.06 1.51 7.81 -52.49 -0.41 1.10 16 8 C 0.07 1.71 5.46 -17.82 -0.10 1.62 16 9 N -0.89 -23.44 13.29 55.43 0.74 -22.70 16 10 Si 0.89 19.66 29.54 -169.99 -5.02 14.64 16 11 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 12 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 13 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 14 C 0.53 10.88 6.67 -10.99 -0.07 10.81 16 15 O -0.56 -12.45 15.80 5.55 0.09 -12.36 16 16 C -0.09 -1.83 2.94 -91.56 -0.27 -2.09 16 17 H 0.13 2.50 5.93 -51.93 -0.31 2.19 16 18 C 0.08 1.44 7.55 38.06 0.29 1.73 16 19 O -0.30 -5.73 11.10 -20.17 -0.22 -5.95 16 20 C 0.11 1.97 7.04 -38.95 -0.27 1.69 16 21 C -0.14 -2.17 9.70 -39.31 -0.38 -2.56 16 22 C -0.06 -0.81 5.87 -104.71 -0.61 -1.42 16 23 C -0.11 -1.08 9.60 36.00 0.35 -0.74 16 24 C -0.12 -1.76 5.89 -104.56 -0.62 -2.37 16 25 C -0.11 -1.16 9.61 36.01 0.35 -0.81 16 26 C -0.05 -0.79 9.30 -39.72 -0.37 -1.16 16 27 C -0.14 -2.65 5.25 -104.10 -0.55 -3.19 16 28 H 0.09 1.14 8.06 -52.49 -0.42 0.72 16 29 H 0.10 1.39 7.84 -52.49 -0.41 0.98 16 30 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 31 H 0.07 1.34 7.23 -51.93 -0.38 0.96 16 32 H 0.09 1.58 8.05 -51.93 -0.42 1.16 16 33 H 0.04 0.89 5.91 -51.93 -0.31 0.59 16 34 H 0.04 0.91 8.07 -51.93 -0.42 0.49 16 35 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 36 H 0.13 2.43 7.89 -51.93 -0.41 2.02 16 37 H 0.07 1.38 7.91 -51.92 -0.41 0.97 16 38 H 0.12 1.63 8.06 -52.48 -0.42 1.21 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.07 0.59 5.94 -51.93 -0.31 0.28 16 41 H 0.06 0.56 8.08 -51.93 -0.42 0.14 16 42 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.06 0.65 8.09 -51.93 -0.42 0.23 16 44 H 0.07 0.59 5.95 -51.93 -0.31 0.29 16 45 H 0.12 1.98 8.06 -52.48 -0.42 1.56 16 LS Contribution 373.86 15.07 5.63 5.63 Total: -1.00 -28.16 373.86 -8.39 -36.55 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: -6.60 Total: 5.97 kcal Atomic # 6 Polarization: -6.80 SS G_CDS: -2.57 Total: -9.37 kcal Atomic # 7 Polarization: -35.41 SS G_CDS: 0.30 Total: -35.11 kcal Atomic # 8 Polarization: -18.18 SS G_CDS: -0.14 Total: -18.31 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -5.02 Total: 14.64 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -28.16 -8.39 -36.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359380563.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.285 kcal (2) G-P(sol) polarization free energy of solvation -28.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds