Wall clock time and date at job start Tue Mar 31 2020 11:00:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50704 * 119.99758 * 2 1 4 4 N 1.46501 * 109.47157 * 125.37797 * 3 2 1 5 5 C 1.46503 * 120.00250 * 92.98404 * 4 3 2 6 6 C 1.50696 * 109.47323 * 89.99347 * 5 4 3 7 7 H 1.08000 * 120.00169 * 0.02562 * 6 5 4 8 8 C 1.37878 * 119.99663 * 180.02562 * 6 5 4 9 9 N 1.31516 * 120.00204 * 359.97438 * 8 6 5 10 10 Si 1.86807 * 119.99842 * 180.02562 * 8 6 5 11 11 H 1.48505 * 109.47224 * 59.99580 * 10 8 6 12 12 H 1.48500 * 109.47179 * 179.97438 * 10 8 6 13 13 H 1.48502 * 109.46914 * 299.99738 * 10 8 6 14 14 C 1.34776 * 120.00063 * 272.97447 * 4 3 2 15 15 O 1.21284 * 119.99643 * 4.54107 * 14 4 3 16 16 C 1.50697 * 120.00120 * 184.53397 * 14 4 3 17 17 H 1.08998 * 110.83434 * 329.56973 * 16 14 4 18 18 C 1.54709 * 110.93641 * 93.27618 * 16 14 4 19 19 O 1.43833 * 102.75692 * 143.41752 * 18 16 14 20 20 C 1.36135 * 109.26196 * 332.30327 * 19 18 16 21 21 C 1.39276 * 129.88839 * 198.36659 * 20 19 18 22 22 C 1.37935 * 120.24461 * 181.01178 * 21 20 19 23 23 C 1.50698 * 119.82769 * 179.97438 * 22 21 20 24 24 C 1.38291 * 120.34427 * 359.96231 * 22 21 20 25 25 C 1.50700 * 120.11099 * 179.87766 * 24 22 21 26 26 C 1.38345 * 119.77070 * 359.88117 * 24 22 21 27 27 C 1.37740 * 119.98050 * 359.96074 * 26 24 22 28 28 H 1.07997 * 119.99623 * 174.80875 * 1 2 3 29 29 H 1.08001 * 120.00156 * 354.80951 * 1 2 3 30 30 H 1.07996 * 120.00264 * 179.97438 * 2 1 3 31 31 H 1.08998 * 109.47597 * 5.37533 * 3 2 1 32 32 H 1.09000 * 109.46982 * 245.37400 * 3 2 1 33 33 H 1.08997 * 109.46938 * 210.00154 * 5 4 3 34 34 H 1.09002 * 109.46823 * 329.99748 * 5 4 3 35 35 H 0.97004 * 119.99549 * 180.02562 * 9 8 6 36 36 H 1.09004 * 110.74985 * 261.76695 * 18 16 14 37 37 H 1.09009 * 110.74921 * 25.12153 * 18 16 14 38 38 H 1.08004 * 119.88181 * 0.99382 * 21 20 19 39 39 H 1.09000 * 109.46902 * 90.00115 * 23 22 21 40 40 H 1.08999 * 109.47194 * 210.00341 * 23 22 21 41 41 H 1.08997 * 109.47131 * 330.00080 * 23 22 21 42 42 H 1.09006 * 109.46897 * 90.00249 * 25 24 22 43 43 H 1.09004 * 109.47123 * 209.99796 * 25 24 22 44 44 H 1.08995 * 109.47456 * 330.00341 * 25 24 22 45 45 H 1.08005 * 120.01107 * 179.97438 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 3.0001 1.3283 1.1262 5 6 4.3833 0.8837 0.9378 6 6 5.2370 2.0567 0.5303 7 1 4.7937 3.0357 0.4227 8 6 6.5840 1.8801 0.2947 9 7 7.1238 0.6881 0.4261 10 14 7.6424 3.3344 -0.2098 11 1 7.5968 4.3718 0.8518 12 1 9.0444 2.8836 -0.4009 13 1 7.1275 3.9039 -1.4810 14 6 2.5895 1.7588 2.3355 15 8 1.4253 2.0489 2.5127 16 6 3.5769 1.8795 3.4676 17 1 4.3721 1.1406 3.3689 18 6 4.1588 3.3110 3.5433 19 8 4.2877 3.5269 4.9595 20 6 3.3588 2.7776 5.6144 21 6 2.8684 2.8973 6.9125 22 6 1.9300 2.0040 7.3858 23 6 1.4063 2.1420 8.7921 24 6 1.4673 0.9825 6.5766 25 6 0.4441 0.0078 7.1001 26 6 1.9469 0.8586 5.2849 27 6 2.8815 1.7515 4.8091 28 1 -0.5399 -0.9315 -0.0846 29 1 -0.5400 0.9315 0.0846 30 1 1.8500 -0.9352 0.0004 31 1 1.3591 2.1314 0.0963 32 1 2.6159 1.4057 -0.9342 33 1 4.7610 0.4662 1.8711 34 1 4.4171 0.1218 0.1590 35 1 8.0716 0.5641 0.2607 36 1 5.1320 3.3586 3.0546 37 1 3.4691 4.0319 3.1041 38 1 3.2243 3.6924 7.5509 39 1 0.5268 2.7859 8.7907 40 1 1.1361 1.1588 9.1773 41 1 2.1771 2.5810 9.4255 42 1 -0.5571 0.3829 6.8876 43 1 0.5807 -0.9584 6.6142 44 1 0.5684 -0.1062 8.1769 45 1 1.5885 0.0620 4.6496 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359380563.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:13 Heat of formation + Delta-G solvation = -37.536609 kcal Electronic energy + Delta-G solvation = -26793.054638 eV Core-core repulsion = 23161.818687 eV Total energy + Delta-G solvation = -3631.235951 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.49198 -40.47988 -39.10522 -37.13453 -35.31667 -34.30493 -33.83078 -32.92656 -31.87622 -29.35800 -28.02099 -27.32544 -27.21778 -25.03241 -24.09225 -23.26383 -21.62665 -20.92088 -19.96878 -18.60431 -18.55970 -18.03484 -17.51699 -17.11057 -16.64658 -16.46544 -15.85524 -15.67938 -15.48126 -15.13404 -15.01122 -14.70632 -14.41816 -14.30628 -14.13442 -13.93421 -13.53965 -13.48844 -13.19402 -13.11715 -13.05709 -12.94027 -12.73538 -12.72270 -12.49918 -12.26877 -12.14095 -12.04229 -11.75195 -11.69386 -11.50990 -10.95306 -10.60165 -10.31304 -9.70098 -9.55224 -8.95317 -8.21759 -6.36414 0.26723 0.37556 1.26099 1.43153 1.44310 1.50599 1.56463 2.17850 2.29773 2.41908 2.72491 3.09644 3.34070 3.54134 3.66672 3.85668 3.96761 3.98097 4.02853 4.18359 4.29079 4.31011 4.36463 4.50103 4.53757 4.61106 4.73231 4.76618 4.77886 4.80263 4.83811 4.96692 4.99831 5.04972 5.16098 5.19406 5.25689 5.34592 5.43623 5.61004 5.64572 5.65017 5.73542 5.74343 5.84452 6.01899 6.18582 6.47711 6.76811 7.19998 7.36880 8.83932 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.012015 B = 0.004801 C = 0.003721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2329.808486 B = 5830.417875 C = 7522.131236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.182 4.182 3 C 0.143 3.857 4 N -0.591 5.591 5 C 0.249 3.751 6 C -0.544 4.544 7 H 0.059 0.941 8 C 0.027 3.973 9 N -0.918 5.918 10 Si 0.950 3.050 11 H -0.268 1.268 12 H -0.285 1.285 13 H -0.271 1.271 14 C 0.529 3.471 15 O -0.575 6.575 16 C -0.092 4.092 17 H 0.109 0.891 18 C 0.083 3.917 19 O -0.313 6.313 20 C 0.079 3.921 21 C -0.143 4.143 22 C -0.054 4.054 23 C -0.110 4.110 24 C -0.120 4.120 25 C -0.106 4.106 26 C -0.066 4.066 27 C -0.168 4.168 28 H 0.118 0.882 29 H 0.096 0.904 30 H 0.107 0.893 31 H 0.071 0.929 32 H 0.089 0.911 33 H 0.026 0.974 34 H 0.025 0.975 35 H 0.268 0.732 36 H 0.122 0.878 37 H 0.072 0.928 38 H 0.146 0.854 39 H 0.085 0.915 40 H 0.090 0.910 41 H 0.079 0.921 42 H 0.076 0.924 43 H 0.065 0.935 44 H 0.094 0.906 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.891 -0.272 11.333 15.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.201 4.201 3 C 0.021 3.979 4 N -0.320 5.320 5 C 0.129 3.871 6 C -0.583 4.583 7 H 0.077 0.923 8 C -0.174 4.174 9 N -0.557 5.557 10 Si 0.775 3.225 11 H -0.193 1.193 12 H -0.210 1.210 13 H -0.197 1.197 14 C 0.317 3.683 15 O -0.456 6.456 16 C -0.113 4.113 17 H 0.127 0.873 18 C 0.008 3.992 19 O -0.228 6.228 20 C 0.034 3.966 21 C -0.161 4.161 22 C -0.055 4.055 23 C -0.166 4.166 24 C -0.120 4.120 25 C -0.162 4.162 26 C -0.084 4.084 27 C -0.169 4.169 28 H 0.137 0.863 29 H 0.114 0.886 30 H 0.125 0.875 31 H 0.090 0.910 32 H 0.107 0.893 33 H 0.044 0.956 34 H 0.043 0.957 35 H 0.077 0.923 36 H 0.140 0.860 37 H 0.091 0.909 38 H 0.164 0.836 39 H 0.103 0.897 40 H 0.109 0.891 41 H 0.098 0.902 42 H 0.095 0.905 43 H 0.084 0.916 44 H 0.112 0.888 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -11.130 -0.074 11.450 15.968 hybrid contribution 1.230 0.433 -1.283 1.829 sum -9.900 0.359 10.167 14.195 Atomic orbital electron populations 1.23949 0.95175 1.02675 0.98338 1.23242 0.96777 0.98203 1.01844 1.20574 0.91752 0.96041 0.89508 1.48243 1.12971 1.62061 1.08712 1.19193 0.76041 0.94989 0.96894 1.21594 0.93570 0.95431 1.47677 0.92252 1.25593 0.98909 0.98009 0.94892 1.70002 1.13296 1.23260 1.49135 0.85728 0.77734 0.79845 0.79192 1.19296 1.21014 1.19663 1.20053 0.87962 0.76631 0.83668 1.90587 1.19143 1.52432 1.83426 1.21406 0.97768 1.00601 0.91534 0.87277 1.23626 1.03340 0.93058 0.79212 1.86783 1.51500 1.65187 1.19293 1.19876 0.90837 0.90881 0.95017 1.20371 1.00254 1.02895 0.92599 1.19856 0.94651 0.93019 0.97924 1.20930 1.01953 1.04210 0.89529 1.19975 1.00500 0.98797 0.92731 1.20822 0.96347 0.96555 1.02468 1.20247 0.94700 0.97723 0.95737 1.20465 1.02375 0.99171 0.94920 0.86350 0.88582 0.87536 0.91033 0.89286 0.95620 0.95705 0.92318 0.86023 0.90943 0.83626 0.89695 0.89147 0.90231 0.90542 0.91604 0.88797 0.86864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.51 14.32 67.78 0.97 -3.54 16 2 C -0.18 -5.86 9.83 25.65 0.25 -5.61 16 3 C 0.14 5.28 5.78 85.63 0.50 5.77 16 4 N -0.59 -24.81 2.45 -830.50 -2.03 -26.84 16 5 C 0.25 11.67 4.91 85.63 0.42 12.09 16 6 C -0.54 -26.98 9.13 25.60 0.23 -26.74 16 7 H 0.06 2.94 7.81 -2.91 -0.02 2.91 16 8 C 0.03 1.37 5.46 84.65 0.46 1.83 16 9 N -0.92 -49.49 13.29 21.45 0.28 -49.21 16 10 Si 0.95 40.57 29.54 68.60 2.03 42.60 16 11 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 12 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 13 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 14 C 0.53 22.61 6.67 87.66 0.58 23.20 16 15 O -0.57 -26.20 15.80 -3.04 -0.05 -26.25 16 16 C -0.09 -3.76 2.94 -11.40 -0.03 -3.79 16 17 H 0.11 4.70 5.93 -2.39 -0.01 4.68 16 18 C 0.08 3.25 7.55 72.56 0.55 3.80 16 19 O -0.31 -12.13 11.10 -95.09 -1.06 -13.18 16 20 C 0.08 2.87 7.04 22.68 0.16 3.03 16 21 C -0.14 -4.16 9.70 22.45 0.22 -3.95 16 22 C -0.05 -1.35 5.87 -19.92 -0.12 -1.46 16 23 C -0.11 -1.65 9.60 71.24 0.68 -0.97 16 24 C -0.12 -3.22 5.89 -19.83 -0.12 -3.34 16 25 C -0.11 -1.96 9.61 71.24 0.68 -1.28 16 26 C -0.07 -2.24 9.30 22.18 0.21 -2.03 16 27 C -0.17 -6.42 5.25 -19.52 -0.10 -6.52 16 28 H 0.12 2.63 8.06 -2.91 -0.02 2.61 16 29 H 0.10 2.66 7.84 -2.91 -0.02 2.64 16 30 H 0.11 3.42 8.06 -2.91 -0.02 3.39 16 31 H 0.07 2.64 7.23 -2.39 -0.02 2.62 16 32 H 0.09 3.22 8.05 -2.39 -0.02 3.20 16 33 H 0.03 1.28 5.91 -2.39 -0.01 1.26 16 34 H 0.02 1.23 8.07 -2.39 -0.02 1.21 16 35 H 0.27 13.82 8.31 -92.70 -0.77 13.05 16 36 H 0.12 4.84 7.89 -2.38 -0.02 4.82 16 37 H 0.07 2.81 7.91 -2.38 -0.02 2.79 16 38 H 0.15 3.51 8.06 -2.91 -0.02 3.49 16 39 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.09 1.04 5.94 -2.39 -0.01 1.02 16 41 H 0.08 1.01 8.08 -2.39 -0.02 0.99 16 42 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 43 H 0.06 1.20 8.09 -2.39 -0.02 1.18 16 44 H 0.09 1.24 5.95 -2.39 -0.01 1.23 16 45 H 0.11 3.86 8.06 -2.91 -0.02 3.84 16 Total: -1.00 -61.31 373.86 5.71 -55.60 By element: Atomic # 1 Polarization: 25.83 SS G_CDS: 0.98 Total: 26.81 kcal Atomic # 6 Polarization: -15.07 SS G_CDS: 5.55 Total: -9.52 kcal Atomic # 7 Polarization: -74.31 SS G_CDS: -1.75 Total: -76.05 kcal Atomic # 8 Polarization: -38.33 SS G_CDS: -1.10 Total: -39.43 kcal Atomic # 14 Polarization: 40.57 SS G_CDS: 2.03 Total: 42.60 kcal Total: -61.31 5.71 -55.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359380563.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.064 kcal (2) G-P(sol) polarization free energy of solvation -61.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds