Wall clock time and date at job start Tue Mar 31 2020 11:16:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50701 * 120.00076 * 2 1 4 4 N 1.46497 * 109.47003 * 125.00050 * 3 2 1 5 5 C 1.46506 * 119.99849 * 273.89680 * 4 3 2 6 6 C 1.50702 * 109.47172 * 270.00379 * 5 4 3 7 7 H 1.07998 * 120.00211 * 359.97438 * 6 5 4 8 8 C 1.37880 * 119.99583 * 180.02562 * 6 5 4 9 9 N 1.31511 * 120.00427 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 119.99777 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.47144 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47437 * 119.99608 * 10 8 6 13 13 H 1.48503 * 109.46932 * 239.99895 * 10 8 6 14 14 C 1.34776 * 120.00502 * 93.90086 * 4 3 2 15 15 O 1.21276 * 120.00299 * 185.35372 * 14 4 3 16 16 C 1.50707 * 119.99767 * 5.35872 * 14 4 3 17 17 H 1.09004 * 109.67600 * 314.01471 * 16 14 4 18 18 C 1.53405 * 109.71190 * 74.55073 * 16 14 4 19 19 C 1.53082 * 108.28630 * 184.48259 * 18 16 14 20 20 C 1.50773 * 109.67167 * 311.79260 * 19 18 16 21 21 C 1.38510 * 118.76154 * 197.69709 * 20 19 18 22 22 C 1.38102 * 120.31803 * 180.15677 * 21 20 19 23 23 C 1.50706 * 120.00782 * 180.02562 * 22 21 20 24 24 C 1.38285 * 119.98536 * 0.02562 * 22 21 20 25 25 C 1.37976 * 119.95816 * 359.91541 * 24 22 21 26 26 C 1.38368 * 121.40921 * 17.73016 * 20 19 18 27 27 O 1.35846 * 121.81128 * 359.70029 * 26 20 19 28 28 H 1.08001 * 119.99646 * 0.02562 * 1 2 3 29 29 H 1.07994 * 120.00137 * 179.97438 * 1 2 3 30 30 H 1.08001 * 119.99646 * 179.97438 * 2 1 3 31 31 H 1.08989 * 109.47189 * 4.99563 * 3 2 1 32 32 H 1.08998 * 109.47036 * 244.99807 * 3 2 1 33 33 H 1.08998 * 109.47231 * 30.00400 * 5 4 3 34 34 H 1.09000 * 109.46970 * 150.00036 * 5 4 3 35 35 H 0.96995 * 120.00131 * 180.02562 * 9 8 6 36 36 H 1.08995 * 109.70386 * 304.17880 * 18 16 14 37 37 H 1.09000 * 109.70215 * 64.78791 * 18 16 14 38 38 H 1.09000 * 109.43678 * 71.84927 * 19 18 16 39 39 H 1.08992 * 109.43934 * 191.77515 * 19 18 16 40 40 H 1.08001 * 119.83636 * 0.14473 * 21 20 19 41 41 H 1.09004 * 109.46457 * 90.00240 * 23 22 21 42 42 H 1.08992 * 109.46844 * 210.00228 * 23 22 21 43 43 H 1.09000 * 109.47200 * 330.00712 * 23 22 21 44 44 H 1.08002 * 120.02343 * 179.97438 * 24 22 21 45 45 H 1.07994 * 119.89064 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3318 1.1314 5 6 2.5345 1.7850 2.4467 6 6 2.7420 3.2729 2.5661 7 1 3.1732 3.8256 1.7445 8 6 2.3822 3.9284 3.7245 9 7 1.8576 3.2553 4.7251 10 14 2.6388 5.7728 3.8722 11 1 3.2401 6.2910 2.6172 12 1 1.3315 6.4372 4.1064 13 1 3.5492 6.0563 5.0107 14 6 4.2721 0.9396 0.9623 15 8 5.0161 0.8690 1.9174 16 6 4.7769 0.5889 -0.4137 17 1 4.0551 -0.0549 -0.9163 18 6 4.9834 1.8704 -1.2312 19 6 5.3868 1.4730 -2.6535 20 6 6.4882 0.4448 -2.6001 21 6 7.2487 0.2231 -3.7363 22 6 8.2635 -0.7135 -3.7242 23 6 9.0869 -0.9487 -4.9643 24 6 8.5239 -1.4355 -2.5740 25 6 7.7706 -1.2182 -1.4386 26 6 6.7485 -0.2739 -1.4467 27 8 6.0316 -0.0853 -0.3083 28 1 -0.5399 0.9354 -0.0004 29 1 -0.5400 -0.9352 -0.0004 30 1 1.8499 -0.9354 0.0004 31 1 1.3587 2.1316 0.0895 32 1 2.6213 1.4026 -0.9314 33 1 1.4750 1.5557 2.5606 34 1 3.1022 1.2754 3.2252 35 1 1.6042 3.7165 5.5399 36 1 4.0560 2.4423 -1.2587 37 1 5.7730 2.4711 -0.7797 38 1 4.5242 1.0539 -3.1714 39 1 5.7395 2.3538 -3.1900 40 1 7.0468 0.7853 -4.6361 41 1 9.9494 -0.2820 -4.9595 42 1 9.4278 -1.9837 -4.9832 43 1 8.4792 -0.7501 -5.8471 44 1 9.3172 -2.1684 -2.5639 45 1 7.9752 -1.7823 -0.5408 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359402534.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:09 Heat of formation + Delta-G solvation = -31.875107 kcal Electronic energy + Delta-G solvation = -26336.466671 eV Core-core repulsion = 22705.476221 eV Total energy + Delta-G solvation = -3630.990450 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -40.91937 -39.13553 -37.51218 -35.75810 -34.35904 -33.24395 -32.35613 -32.06076 -30.64745 -28.21995 -27.12407 -25.82579 -25.29409 -23.51029 -22.75691 -22.29526 -20.16447 -19.58300 -18.74719 -17.92221 -16.73609 -16.53938 -16.46673 -15.41321 -15.16717 -14.90135 -14.72593 -14.43634 -14.33071 -14.08376 -13.85629 -13.82818 -13.30174 -13.26445 -12.95307 -12.71607 -12.45284 -12.37840 -12.16380 -11.85910 -11.53622 -11.35270 -11.32460 -11.15205 -11.11640 -10.92002 -10.86084 -10.64422 -10.39341 -10.22036 -9.67490 -9.23234 -8.93054 -8.85883 -8.46929 -8.01464 -7.77834 -6.07657 -4.12968 1.24228 1.34882 2.38105 2.99265 3.21768 3.27579 3.35868 3.39655 3.63220 4.10237 4.40860 4.49848 4.60878 4.67110 4.81448 4.85522 4.94327 5.07831 5.09274 5.20209 5.25436 5.26919 5.35000 5.38134 5.40716 5.45103 5.50610 5.58565 5.68874 5.73399 5.88385 5.94090 5.97958 6.09198 6.12899 6.21404 6.38079 6.50762 6.72886 6.75509 6.85661 7.00925 7.40324 7.43646 7.53824 7.88545 8.18174 8.27511 8.82862 8.97859 9.52226 11.00536 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.016874 B = 0.003401 C = 0.003163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1658.911447 B = 8230.944284 C = 8848.905221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.172 4.172 3 C 0.128 3.872 4 N -0.588 5.588 5 C 0.248 3.752 6 C -0.529 4.529 7 H 0.059 0.941 8 C 0.062 3.938 9 N -0.892 5.892 10 Si 0.898 3.102 11 H -0.273 1.273 12 H -0.283 1.283 13 H -0.282 1.282 14 C 0.516 3.484 15 O -0.516 6.516 16 C 0.075 3.925 17 H 0.089 0.911 18 C -0.151 4.151 19 C -0.075 4.075 20 C -0.159 4.159 21 C -0.084 4.084 22 C -0.127 4.127 23 C -0.107 4.107 24 C -0.088 4.088 25 C -0.145 4.145 26 C 0.135 3.865 27 O -0.288 6.288 28 H 0.100 0.900 29 H 0.095 0.905 30 H 0.104 0.896 31 H 0.090 0.910 32 H 0.076 0.924 33 H 0.036 0.964 34 H 0.046 0.954 35 H 0.263 0.737 36 H 0.096 0.904 37 H 0.086 0.914 38 H 0.079 0.921 39 H 0.085 0.915 40 H 0.122 0.878 41 H 0.066 0.934 42 H 0.063 0.937 43 H 0.062 0.938 44 H 0.126 0.874 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.854 -7.761 -20.339 22.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.191 4.191 3 C 0.005 3.995 4 N -0.320 5.320 5 C 0.129 3.871 6 C -0.568 4.568 7 H 0.077 0.923 8 C -0.140 4.140 9 N -0.531 5.531 10 Si 0.726 3.274 11 H -0.198 1.198 12 H -0.209 1.209 13 H -0.208 1.208 14 C 0.300 3.700 15 O -0.391 6.391 16 C 0.015 3.985 17 H 0.107 0.893 18 C -0.189 4.189 19 C -0.112 4.112 20 C -0.160 4.160 21 C -0.102 4.102 22 C -0.128 4.128 23 C -0.163 4.163 24 C -0.106 4.106 25 C -0.163 4.163 26 C 0.090 3.910 27 O -0.200 6.200 28 H 0.118 0.882 29 H 0.113 0.887 30 H 0.122 0.878 31 H 0.109 0.891 32 H 0.094 0.906 33 H 0.054 0.946 34 H 0.064 0.936 35 H 0.073 0.927 36 H 0.114 0.886 37 H 0.105 0.895 38 H 0.098 0.902 39 H 0.104 0.896 40 H 0.140 0.860 41 H 0.084 0.916 42 H 0.082 0.918 43 H 0.081 0.919 44 H 0.144 0.856 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 6.226 -7.812 -19.401 21.822 hybrid contribution -0.110 1.084 0.077 1.092 sum 6.116 -6.728 -19.324 21.356 Atomic orbital electron populations 1.23826 0.95768 1.01860 1.00096 1.23398 0.96485 0.98901 1.00307 1.20756 0.93343 0.95763 0.89669 1.48120 1.07728 1.63482 1.12683 1.19337 0.95391 0.94763 0.77568 1.21457 1.41743 0.92714 1.00887 0.92324 1.24932 0.95005 0.98656 0.95433 1.69941 1.42194 1.35884 1.05097 0.86448 0.77777 0.85003 0.78222 1.19777 1.20938 1.20842 1.19637 0.82921 0.78768 0.88658 1.90708 1.55280 1.51671 1.41440 1.22410 0.84781 0.94530 0.96802 0.89296 1.22246 1.04578 0.96950 0.95107 1.20501 0.96425 0.97347 0.96893 1.19842 1.01472 1.00596 0.94121 1.20723 0.94803 0.97594 0.97090 1.19737 0.98360 0.98571 0.96100 1.20689 0.99027 1.01914 0.94700 1.20772 0.98803 0.99243 0.91806 1.20610 0.97143 0.98864 0.99698 1.18814 0.92806 0.93995 0.85423 1.86095 1.31516 1.73414 1.28994 0.88186 0.88681 0.87761 0.89147 0.90565 0.94599 0.93640 0.92701 0.88595 0.89536 0.90220 0.89641 0.85988 0.91572 0.91804 0.91875 0.85606 0.85081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.25 14.32 29.01 0.42 -1.83 16 2 C -0.17 -2.41 9.84 -36.03 -0.35 -2.76 16 3 C 0.13 2.00 5.32 -5.20 -0.03 1.98 16 4 N -0.59 -12.25 2.44 -176.44 -0.43 -12.68 16 5 C 0.25 6.42 5.22 -5.19 -0.03 6.39 16 6 C -0.53 -14.72 9.39 -34.44 -0.32 -15.04 16 7 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 8 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 9 N -0.89 -26.36 13.29 55.43 0.74 -25.62 16 10 Si 0.90 21.62 29.54 -169.99 -5.02 16.60 16 11 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 13 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 14 C 0.52 11.07 6.99 -10.98 -0.08 10.99 16 15 O -0.52 -13.67 16.12 -13.87 -0.22 -13.90 16 16 C 0.07 1.23 2.33 -27.67 -0.06 1.17 16 17 H 0.09 1.25 7.26 -51.93 -0.38 0.88 16 18 C -0.15 -2.10 5.10 -26.48 -0.13 -2.23 16 19 C -0.07 -0.82 5.86 -27.81 -0.16 -0.98 16 20 C -0.16 -2.02 5.75 -104.44 -0.60 -2.62 16 21 C -0.08 -0.90 9.32 -39.53 -0.37 -1.27 16 22 C -0.13 -1.31 5.88 -104.65 -0.62 -1.92 16 23 C -0.11 -0.77 10.01 36.01 0.36 -0.41 16 24 C -0.09 -0.96 9.70 -39.66 -0.38 -1.34 16 25 C -0.14 -1.92 9.94 -39.34 -0.39 -2.31 16 26 C 0.14 2.04 6.47 -39.19 -0.25 1.78 16 27 O -0.29 -5.18 9.50 -38.68 -0.37 -5.55 16 28 H 0.10 1.23 7.84 -52.49 -0.41 0.82 16 29 H 0.09 1.04 8.06 -52.49 -0.42 0.62 16 30 H 0.10 1.42 8.06 -52.49 -0.42 1.00 16 31 H 0.09 1.44 7.75 -51.94 -0.40 1.03 16 32 H 0.08 0.96 4.62 -51.93 -0.24 0.72 16 33 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 34 H 0.05 1.35 7.36 -51.93 -0.38 0.97 16 35 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 36 H 0.10 1.22 6.37 -51.93 -0.33 0.89 16 37 H 0.09 1.36 8.14 -51.93 -0.42 0.93 16 38 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.12 1.03 8.06 -52.49 -0.42 0.60 16 41 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.06 0.40 8.09 -51.93 -0.42 -0.02 16 43 H 0.06 0.40 8.09 -51.93 -0.42 -0.02 16 44 H 0.13 1.05 8.06 -52.49 -0.42 0.62 16 45 H 0.13 1.65 8.06 -52.49 -0.42 1.23 16 LS Contribution 373.50 15.07 5.63 5.63 Total: -1.00 -33.81 373.50 -9.54 -43.34 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -6.75 Total: 0.93 kcal Atomic # 6 Polarization: -5.66 SS G_CDS: -3.11 Total: -8.76 kcal Atomic # 7 Polarization: -38.60 SS G_CDS: 0.31 Total: -38.30 kcal Atomic # 8 Polarization: -18.85 SS G_CDS: -0.59 Total: -19.44 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.81 -9.54 -43.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359402534.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.470 kcal (2) G-P(sol) polarization free energy of solvation -33.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds